Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 71 - 166 | 1.4e-15 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 426 |
| AciI | CCGC | 2 cut(s) | 194, 528 |
| AclWI | GGATC | 2 cut(s) | 111, 124 |
| AcsI | RAATTY | 1 cut(s) | 596 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AfaI | GTAC | 4 cut(s) | 50, 143, 330, 342 |
| AgsI | TTSAA | 1 cut(s) | 295 |
| AjnI | CCWGG | 2 cut(s) | 331, 422 |
| AluBI | AGCT | 5 cut(s) | 239, 389, 494, 503, 606 |
| AluI | AGCT | 5 cut(s) | 239, 389, 494, 503, 606 |
| Alw21I | GWGCWC | 1 cut(s) | 267 |
| AlwI | GGATC | 2 cut(s) | 111, 124 |
| AoxI | GGCC | 1 cut(s) | 56 |
| ApeKI | GCWGC | 3 cut(s) | 389, 503, 562 |
| ApoI | RAATTY | 1 cut(s) | 596 |
| AseI | ATTAAT | 1 cut(s) | 522 |
| AsuC2I | CCSGG | 2 cut(s) | 60, 121 |
| AsuHPI | GGTGA | 2 cut(s) | 296, 428 |
| BamHI | GGATCC | 1 cut(s) | 116 |
| BanI | GGYRCC | 1 cut(s) | 426 |
| BbsI | GAAGAC | 1 cut(s) | 93 |
| Bbv12I | GWGCWC | 1 cut(s) | 267 |
| BbvI | GCAGC | 3 cut(s) | 376, 490, 549 |
| BccI | CCATC | 1 cut(s) | 388 |
| BciT130I | CCWGG | 2 cut(s) | 333, 424 |
| BcnI | CCSGG | 2 cut(s) | 60, 121 |
| BfmI | CTRYAG | 1 cut(s) | 52 |
| BisI | GCNGC | 3 cut(s) | 390, 504, 563 |
| BlsI | GCNGC | 3 cut(s) | 391, 505, 564 |
| BmcAI | AGTACT | 1 cut(s) | 50 |
| Bme1390I | CCNGG | 4 cut(s) | 60, 121, 333, 424 |
| BmiI | GGNNCC | 2 cut(s) | 118, 428 |
| BmrFI | CCNGG | 4 cut(s) | 60, 121, 333, 424 |
| BmsI | GCATC | 4 cut(s) | 38, 467, 565, 573 |
| BpiI | GAAGAC | 1 cut(s) | 93 |
| BpuEI | CTTGAG | 1 cut(s) | 474 |
| BpuMI | CCSGG | 2 cut(s) | 60, 121 |
| BsaJI | CCNNGG | 1 cut(s) | 59 |
| Bse1I | ACTGG | 2 cut(s) | 46, 286 |
| Bse3DI | GCAATG | 1 cut(s) | 73 |
| BseBI | CCWGG | 2 cut(s) | 333, 424 |
| BseDI | CCNNGG | 1 cut(s) | 59 |
| BseMI | GCAATG | 1 cut(s) | 73 |
| BseNI | ACTGG | 2 cut(s) | 46, 286 |
| BseXI | GCAGC | 3 cut(s) | 376, 490, 549 |
| BsgI | GTGCAG | 1 cut(s) | 489 |
| BshFI | GGCC | 1 cut(s) | 58 |
| BshNI | GGYRCC | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 267 |
| BsiSI | CCGG | 2 cut(s) | 59, 121 |
| BsnI | GGCC | 1 cut(s) | 58 |
| Bsp1286I | GDGCHC | 1 cut(s) | 267 |
| Bsp143I | GATC | 1 cut(s) | 116 |
| BspACI | CCGC | 2 cut(s) | 194, 528 |
| BspANI | GGCC | 1 cut(s) | 58 |
| BspLI | GGNNCC | 2 cut(s) | 118, 428 |
| BspPI | GGATC | 2 cut(s) | 111, 124 |
| BspT107I | GGYRCC | 1 cut(s) | 426 |
| BsrDI | GCAATG | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 46, 286 |
| BssECI | CCNNGG | 1 cut(s) | 59 |
| BssMI | GATC | 1 cut(s) | 116 |
| Bst2UI | CCWGG | 2 cut(s) | 333, 424 |
| BstC8I | GCNNGC | 3 cut(s) | 241, 364, 431 |
| BstEII | GGTNACC | 1 cut(s) | 284 |
| BstKTI | GATC | 1 cut(s) | 119 |
| BstMBI | GATC | 1 cut(s) | 116 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 435, 500 |
| BstNI | CCWGG | 2 cut(s) | 333, 424 |
| BstNSI | RCATGY | 1 cut(s) | 314 |
| BstPI | GGTNACC | 1 cut(s) | 284 |
| BstSCI | CCNGG | 4 cut(s) | 58, 119, 331, 422 |
| BstSFI | CTRYAG | 1 cut(s) | 52 |
| BstV1I | GCAGC | 3 cut(s) | 376, 490, 549 |
| BstV2I | GAAGAC | 1 cut(s) | 93 |
| BstX2I | RGATCY | 1 cut(s) | 116 |
| BstYI | RGATCY | 1 cut(s) | 116 |
| BsuRI | GGCC | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 3 cut(s) | 241, 364, 431 |
| CsiI | ACCWGGT | 1 cut(s) | 422 |
| Csp6I | GTAC | 4 cut(s) | 49, 142, 329, 341 |
| CviAII | CATG | 3 cut(s) | 138, 311, 400 |
| CviQI | GTAC | 4 cut(s) | 49, 142, 329, 341 |
| DpnI | GATC | 1 cut(s) | 118 |
| DpnII | GATC | 1 cut(s) | 116 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| EciI | GGCGGA | 1 cut(s) | 209 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| Eco91I | GGTNACC | 1 cut(s) | 284 |
| EcoO65I | GGTNACC | 1 cut(s) | 284 |
| EcoRII | CCWGG | 2 cut(s) | 331, 422 |
| EcoT22I | ATGCAT | 2 cut(s) | 353, 401 |
| FaeI | CATG | 3 cut(s) | 141, 314, 403 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 466, 498 |
| FatI | CATG | 3 cut(s) | 137, 310, 399 |
| FauNDI | CATATG | 2 cut(s) | 347, 353 |
| Fnu4HI | GCNGC | 3 cut(s) | 390, 504, 563 |
| Fsp4HI | GCNGC | 3 cut(s) | 390, 504, 563 |
| GluI | GCNGC | 3 cut(s) | 390, 504, 563 |
| HaeIII | GGCC | 1 cut(s) | 58 |
| HapII | CCGG | 2 cut(s) | 59, 121 |
| Hin1II | CATG | 3 cut(s) | 141, 314, 403 |
| HindIII | AAGCTT | 1 cut(s) | 604 |
| HpaII | CCGG | 2 cut(s) | 59, 121 |
| HphI | GGTGA | 2 cut(s) | 296, 428 |
| Hpy188III | TCNNGA | 1 cut(s) | 384 |
| HpyAV | CCTTC | 2 cut(s) | 76, 167 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 435, 500 |
| Hsp92II | CATG | 3 cut(s) | 141, 314, 403 |
| Kzo9I | GATC | 1 cut(s) | 116 |
| Lsp1109I | GCAGC | 3 cut(s) | 376, 490, 549 |
| LweI | GCATC | 4 cut(s) | 38, 467, 565, 573 |
| MabI | ACCWGGT | 1 cut(s) | 422 |
| MaeIII | GTNAC | 1 cut(s) | 284 |
| MalI | GATC | 1 cut(s) | 118 |
| MboI | GATC | 1 cut(s) | 116 |
| MboII | GAAGA | 2 cut(s) | 98, 267 |
| MflI | RGATCY | 1 cut(s) | 116 |
| MhlI | GDGCHC | 1 cut(s) | 267 |
| MluCI | AATT | 3 cut(s) | 271, 519, 596 |
| MmeI | TCCRAC | 2 cut(s) | 57, 168 |
| MnlI | CCTC | 9 cut(s) | 141, 161, 184, 197, 253, 313, 351, 445, 519 |
| Mph1103I | ATGCAT | 2 cut(s) | 353, 401 |
| MseI | TTAA | 4 cut(s) | 219, 522, 552, 602 |
| MslI | CAYNNNNRTG | 1 cut(s) | 414 |
| MspA1I | CMGCKG | 1 cut(s) | 530 |
| MspI | CCGG | 2 cut(s) | 59, 121 |
| MspR9I | CCNGG | 4 cut(s) | 60, 121, 333, 424 |
| MvaI | CCWGG | 2 cut(s) | 333, 424 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 435, 500 |
| NciI | CCSGG | 2 cut(s) | 60, 121 |
| NdeI | CATATG | 2 cut(s) | 347, 353 |
| NdeII | GATC | 1 cut(s) | 116 |
| NlaIII | CATG | 3 cut(s) | 141, 314, 403 |
| NlaIV | GGNNCC | 2 cut(s) | 118, 428 |
| NmuCI | GTSAC | 1 cut(s) | 284 |
| NsiI | ATGCAT | 2 cut(s) | 353, 401 |
| NspI | RCATGY | 1 cut(s) | 314 |
| PfoI | TCCNGGA | 1 cut(s) | 119 |
| PkrI | GCNGC | 3 cut(s) | 391, 505, 564 |
| PshBI | ATTAAT | 1 cut(s) | 522 |
| Psp6I | CCWGG | 2 cut(s) | 331, 422 |
| PspEI | GGTNACC | 1 cut(s) | 284 |
| PspGI | CCWGG | 2 cut(s) | 331, 422 |
| PspN4I | GGNNCC | 2 cut(s) | 118, 428 |
| PsuI | RGATCY | 1 cut(s) | 116 |
| RsaI | GTAC | 4 cut(s) | 50, 143, 330, 342 |
| RsaNI | GTAC | 4 cut(s) | 49, 142, 329, 341 |
| RseI | CAYNNNNRTG | 1 cut(s) | 414 |
| SaqAI | TTAA | 4 cut(s) | 219, 522, 552, 602 |
| SatI | GCNGC | 3 cut(s) | 390, 504, 563 |
| Sau3AI | GATC | 1 cut(s) | 116 |
| ScaI | AGTACT | 1 cut(s) | 50 |
| ScrFI | CCNGG | 4 cut(s) | 60, 121, 333, 424 |
| SduI | GDGCHC | 1 cut(s) | 267 |
| SexAI | ACCWGGT | 1 cut(s) | 422 |
| SfaNI | GCATC | 4 cut(s) | 38, 467, 565, 573 |
| SfcI | CTRYAG | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 414 |
| SmlI | CTYRAG | 1 cut(s) | 489 |
| SmoI | CTYRAG | 1 cut(s) | 489 |
| Sse9I | AATT | 3 cut(s) | 271, 519, 596 |
| SsiI | CCGC | 2 cut(s) | 194, 528 |
| SspI | AATATT | 1 cut(s) | 99 |
| StyD4I | CCNGG | 4 cut(s) | 58, 119, 331, 422 |
| TaqI | TCGA | 2 cut(s) | 164, 534 |
| TasI | AATT | 3 cut(s) | 271, 519, 596 |
| TatI | WGTACW | 1 cut(s) | 48 |
| Tru1I | TTAA | 4 cut(s) | 219, 522, 552, 602 |
| Tru9I | TTAA | 4 cut(s) | 219, 522, 552, 602 |
| TseFI | GTSAC | 1 cut(s) | 284 |
| TseI | GCWGC | 3 cut(s) | 389, 503, 562 |
| Tsp45I | GTSAC | 1 cut(s) | 284 |
| TspDTI | ATGAA | 1 cut(s) | 416 |
| VspI | ATTAAT | 1 cut(s) | 522 |
| XapI | RAATTY | 1 cut(s) | 596 |
| XceI | RCATGY | 1 cut(s) | 314 |
| ZrmI | AGTACT | 1 cut(s) | 50 |
| Zsp2I | ATGCAT | 2 cut(s) | 353, 401 |