ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 27 - 107 | 1.1e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 164 |
| AcyI | GRCGYC | 2 cut(s) | 31, 165 |
| AfaI | GTAC | 2 cut(s) | 13, 151 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 62 |
| AgsI | TTSAA | 2 cut(s) | 290, 299 |
| AhlI | ACTAGT | 1 cut(s) | 292 |
| AluBI | AGCT | 4 cut(s) | 161, 218, 260, 311 |
| AluI | AGCT | 4 cut(s) | 161, 218, 260, 311 |
| Alw26I | GTCTC | 1 cut(s) | 198 |
| AspLEI | GCGC | 1 cut(s) | 167 |
| AsuHPI | GGTGA | 2 cut(s) | 142, 253 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 141, 174 |
| BanI | GGYRCC | 1 cut(s) | 164 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| BccI | CCATC | 1 cut(s) | 80 |
| BclI | TGATCA | 2 cut(s) | 97, 181 |
| BcoDI | GTCTC | 1 cut(s) | 198 |
| BcuI | ACTAGT | 1 cut(s) | 292 |
| BfaI | CTAG | 4 cut(s) | 35, 219, 257, 293 |
| BfoI | RGCGCY | 1 cut(s) | 168 |
| BmiI | GGNNCC | 2 cut(s) | 50, 166 |
| BmrI | ACTGGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 130 |
| BmuI | ACTGGG | 1 cut(s) | 131 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 40, 72 |
| BpmI | CTGGAG | 1 cut(s) | 42 |
| Bsa29I | ATCGAT | 1 cut(s) | 325 |
| BsaBI | GATNNNNATC | 1 cut(s) | 252 |
| BsaHI | GRCGYC | 2 cut(s) | 31, 165 |
| BsaI | GGTCTC | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 1 cut(s) | 44 |
| BsaWI | WCCGGW | 1 cut(s) | 262 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 62 |
| Bse1I | ACTGG | 3 cut(s) | 59, 126, 151 |
| Bse3DI | GCAATG | 1 cut(s) | 182 |
| Bse8I | GATNNNNATC | 1 cut(s) | 252 |
| BseCI | ATCGAT | 1 cut(s) | 325 |
| BseDI | CCNNGG | 1 cut(s) | 44 |
| BseJI | GATNNNNATC | 1 cut(s) | 252 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 62 |
| BseMI | GCAATG | 1 cut(s) | 182 |
| BseNI | ACTGG | 3 cut(s) | 59, 126, 151 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BshNI | GGYRCC | 1 cut(s) | 164 |
| BshVI | ATCGAT | 1 cut(s) | 325 |
| BsiSI | CCGG | 1 cut(s) | 263 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 62 |
| BsmAI | GTCTC | 1 cut(s) | 198 |
| Bso31I | GGTCTC | 1 cut(s) | 198 |
| Bsp1286I | GDGCHC | 1 cut(s) | 53 |
| Bsp143I | GATC | 3 cut(s) | 97, 181, 322 |
| BspDI | ATCGAT | 1 cut(s) | 325 |
| BspLI | GGNNCC | 2 cut(s) | 50, 166 |
| BspT107I | GGYRCC | 1 cut(s) | 164 |
| BspTNI | GGTCTC | 1 cut(s) | 198 |
| BsrDI | GCAATG | 1 cut(s) | 182 |
| BsrI | ACTGG | 3 cut(s) | 59, 126, 151 |
| BssECI | CCNNGG | 1 cut(s) | 44 |
| BssMI | GATC | 3 cut(s) | 97, 181, 322 |
| BssNI | GRCGYC | 2 cut(s) | 31, 165 |
| BssT1I | CCWWGG | 1 cut(s) | 44 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 154 |
| BstACI | GRCGYC | 2 cut(s) | 31, 165 |
| BstC8I | GCNNGC | 3 cut(s) | 68, 163, 232 |
| BstDEI | CTNAG | 1 cut(s) | 15 |
| BstH2I | RGCGCY | 1 cut(s) | 168 |
| BstHHI | GCGC | 1 cut(s) | 167 |
| BstKTI | GATC | 3 cut(s) | 100, 184, 325 |
| BstMAI | GTCTC | 1 cut(s) | 198 |
| BstMBI | GATC | 3 cut(s) | 97, 181, 322 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 308 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 66 |
| Bsu15I | ATCGAT | 1 cut(s) | 325 |
| BsuTUI | ATCGAT | 1 cut(s) | 325 |
| BtsI | GCAGTG | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 1 cut(s) | 241 |
| Cac8I | GCNNGC | 3 cut(s) | 68, 163, 232 |
| CfoI | GCGC | 1 cut(s) | 167 |
| ClaI | ATCGAT | 1 cut(s) | 325 |
| CseI | GACGC | 1 cut(s) | 20 |
| Csp6I | GTAC | 2 cut(s) | 12, 150 |
| CviAII | CATG | 1 cut(s) | 185 |
| CviQI | GTAC | 2 cut(s) | 12, 150 |
| DdeI | CTNAG | 1 cut(s) | 15 |
| DinI | GGCGCC | 1 cut(s) | 166 |
| DpnI | GATC | 3 cut(s) | 99, 183, 324 |
| DpnII | GATC | 3 cut(s) | 97, 181, 322 |
| Eco130I | CCWWGG | 1 cut(s) | 44 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco31I | GGTCTC | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 1 cut(s) | 44 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| EgeI | GGCGCC | 1 cut(s) | 166 |
| EheI | GGCGCC | 1 cut(s) | 166 |
| ErhI | CCWWGG | 1 cut(s) | 44 |
| FaeI | CATG | 1 cut(s) | 188 |
| FaiI | YATR | 2 cut(s) | 111, 186 |
| FatI | CATG | 1 cut(s) | 184 |
| FbaI | TGATCA | 2 cut(s) | 97, 181 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| FspBI | CTAG | 4 cut(s) | 35, 219, 257, 293 |
| GlaI | GCGC | 1 cut(s) | 166 |
| GsuI | CTGGAG | 1 cut(s) | 42 |
| HaeII | RGCGCY | 1 cut(s) | 168 |
| HapII | CCGG | 1 cut(s) | 263 |
| HgaI | GACGC | 1 cut(s) | 20 |
| HhaI | GCGC | 1 cut(s) | 167 |
| Hin1I | GRCGYC | 2 cut(s) | 31, 165 |
| Hin1II | CATG | 1 cut(s) | 188 |
| Hin6I | GCGC | 1 cut(s) | 165 |
| HinP1I | GCGC | 1 cut(s) | 165 |
| HinfI | GANTC | 2 cut(s) | 133, 275 |
| HpaII | CCGG | 1 cut(s) | 263 |
| HphI | GGTGA | 2 cut(s) | 142, 253 |
| Hpy188I | TCNGA | 2 cut(s) | 280, 335 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| HpyAV | CCTTC | 1 cut(s) | 296 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 154 |
| HpyCH4V | TGCA | 1 cut(s) | 234 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 308 |
| HpyF3I | CTNAG | 1 cut(s) | 15 |
| Hsp92I | GRCGYC | 2 cut(s) | 31, 165 |
| Hsp92II | CATG | 1 cut(s) | 188 |
| HspAI | GCGC | 1 cut(s) | 165 |
| KasI | GGCGCC | 1 cut(s) | 164 |
| Ksp22I | TGATCA | 2 cut(s) | 97, 181 |
| Kzo9I | GATC | 3 cut(s) | 97, 181, 322 |
| LmnI | GCTCC | 2 cut(s) | 48, 265 |
| LpnPI | CCDG | 8 cut(s) | 52, 72, 86, 107, 132, 147, 181, 276 |
| LweI | GCATC | 1 cut(s) | 130 |
| MaeI | CTAG | 4 cut(s) | 35, 219, 257, 293 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MalI | GATC | 3 cut(s) | 99, 183, 324 |
| MboI | GATC | 3 cut(s) | 97, 181, 322 |
| MhlI | GDGCHC | 1 cut(s) | 53 |
| MluCI | AATT | 1 cut(s) | 267 |
| Mly113I | GGCGCC | 1 cut(s) | 165 |
| MlyI | GAGTC | 1 cut(s) | 284 |
| MnlI | CCTC | 3 cut(s) | 63, 66, 202 |
| MspI | CCGG | 1 cut(s) | 263 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 308 |
| NarI | GGCGCC | 1 cut(s) | 165 |
| NdeII | GATC | 3 cut(s) | 97, 181, 322 |
| NlaIII | CATG | 1 cut(s) | 188 |
| NlaIV | GGNNCC | 2 cut(s) | 50, 166 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| PfeI | GAWTC | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 283 |
| PluTI | GGCGCC | 1 cut(s) | 168 |
| PpsI | GAGTC | 1 cut(s) | 283 |
| PspN4I | GGNNCC | 2 cut(s) | 50, 166 |
| RsaI | GTAC | 2 cut(s) | 13, 151 |
| RsaNI | GTAC | 2 cut(s) | 12, 150 |
| Sau3AI | GATC | 3 cut(s) | 97, 181, 322 |
| SchI | GAGTC | 1 cut(s) | 284 |
| SduI | GDGCHC | 1 cut(s) | 53 |
| SetI | ASST | 5 cut(s) | 163, 220, 227, 262, 313 |
| SfaNI | GCATC | 1 cut(s) | 130 |
| SfoI | GGCGCC | 1 cut(s) | 166 |
| SpeI | ACTAGT | 1 cut(s) | 292 |
| Sse9I | AATT | 1 cut(s) | 267 |
| SspDI | GGCGCC | 1 cut(s) | 164 |
| SspI | AATATT | 1 cut(s) | 82 |
| SspMI | CTAG | 4 cut(s) | 35, 219, 257, 293 |
| StyI | CCWWGG | 1 cut(s) | 44 |
| TaaI | ACNGT | 2 cut(s) | 115, 154 |
| TaqI | TCGA | 3 cut(s) | 136, 307, 325 |
| TasI | AATT | 1 cut(s) | 267 |
| TfiI | GAWTC | 1 cut(s) | 133 |
| TscAI | CASTG | 1 cut(s) | 241 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| TspGWI | ACGGA | 1 cut(s) | 260 |
| TspRI | CASTG | 1 cut(s) | 241 |
| XspI | CTAG | 4 cut(s) | 35, 219, 257, 293 |