ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 525, 1963 |
| AatII | GACGTC | 1 cut(s) | 1347 |
| Acc36I | ACCTGC | 4 cut(s) | 525, 1772, 1963, 1993 |
| AccII | CGCG | 1 cut(s) | 1453 |
| AciI | CCGC | 3 cut(s) | 5, 850, 1451 |
| AclI | AACGTT | 1 cut(s) | 913 |
| AclWI | GGATC | 2 cut(s) | 1904, 1992 |
| AcoI | YGGCCR | 1 cut(s) | 310 |
| AcsI | RAATTY | 2 cut(s) | 605, 956 |
| AcuI | CTGAAG | 1 cut(s) | 684 |
| AcyI | GRCGYC | 1 cut(s) | 1344 |
| AfaI | GTAC | 8 cut(s) | 308, 707, 1243, 1251, 1440, 1456, 1643, 1851 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 41, 319, 448, 1143 |
| AjiI | CACGTC | 1 cut(s) | 1092 |
| AleI | CACNNNNGTG | 1 cut(s) | 302 |
| Alw21I | GWGCWC | 1 cut(s) | 208 |
| Alw26I | GTCTC | 4 cut(s) | 1213, 1686, 1722, 1943 |
| AlwI | GGATC | 2 cut(s) | 1904, 1992 |
| Ama87I | CYCGRG | 1 cut(s) | 1305 |
| AoxI | GGCC | 6 cut(s) | 70, 90, 310, 439, 1727, 1770 |
| ApaI | GGGCCC | 1 cut(s) | 94 |
| ApeKI | GCWGC | 3 cut(s) | 46, 847, 1310 |
| ApoI | RAATTY | 2 cut(s) | 605, 956 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1112, 1144, 1730, 1762 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1085 |
| AspA2I | CCTAGG | 1 cut(s) | 317 |
| AspS9I | GGNCC | 5 cut(s) | 90, 91, 380, 1620, 1771 |
| AsuC2I | CCSGG | 2 cut(s) | 497, 1726 |
| AsuHPI | GGTGA | 6 cut(s) | 506, 953, 1330, 1526, 1561, 1883 |
| AsuII | TTCGAA | 1 cut(s) | 977 |
| AsuNHI | GCTAGC | 1 cut(s) | 931 |
| AvaI | CYCGRG | 1 cut(s) | 1305 |
| AvaII | GGWCC | 2 cut(s) | 380, 1620 |
| AvrII | CCTAGG | 1 cut(s) | 317 |
| AxyI | CCTNAGG | 1 cut(s) | 1257 |
| BaeGI | GKGCMC | 1 cut(s) | 94 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1233, 1266 |
| BanII | GRGCYC | 1 cut(s) | 94 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1447, 1479 |
| BbsI | GAAGAC | 1 cut(s) | 1881 |
| Bbv12I | GWGCWC | 1 cut(s) | 208 |
| BbvI | GCAGC | 3 cut(s) | 33, 859, 1297 |
| BccI | CCATC | 8 cut(s) | 457, 461, 847, 1016, 1163, 1531, 1606, 1862 |
| BceAI | ACGGC | 1 cut(s) | 325 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 28, 62 |
| BclI | TGATCA | 2 cut(s) | 535, 1686 |
| BcnI | CCSGG | 2 cut(s) | 497, 1726 |
| BcoDI | GTCTC | 4 cut(s) | 1213, 1686, 1722, 1943 |
| BfaI | CTAG | 8 cut(s) | 65, 260, 318, 525, 932, 1523, 1814, 2013 |
| BfuAI | ACCTGC | 4 cut(s) | 525, 1772, 1963, 1993 |
| BisI | GCNGC | 3 cut(s) | 47, 848, 1311 |
| BlnI | CCTAGG | 1 cut(s) | 317 |
| BlsI | GCNGC | 3 cut(s) | 48, 849, 1312 |
| Bme1390I | CCNGG | 2 cut(s) | 497, 1726 |
| Bme18I | GGWCC | 2 cut(s) | 380, 1620 |
| BmeT110I | CYCGRG | 1 cut(s) | 1305 |
| BmgBI | CACGTC | 1 cut(s) | 1092 |
| BmgT120I | GGNCC | 5 cut(s) | 90, 91, 380, 1620, 1771 |
| BmiI | GGNNCC | 3 cut(s) | 91, 92, 1195 |
| BmrFI | CCNGG | 2 cut(s) | 497, 1726 |
| BmsI | GCATC | 1 cut(s) | 1907 |
| BmtI | GCTAGC | 1 cut(s) | 935 |
| BoxI | GACNNNNGTC | 1 cut(s) | 378 |
| BpiI | GAAGAC | 1 cut(s) | 1881 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 739, 771 |
| BpmI | CTGGAG | 2 cut(s) | 321, 1658 |
| Bpu14I | TTCGAA | 1 cut(s) | 977 |
| BpuEI | CTTGAG | 4 cut(s) | 8, 181, 338, 1230 |
| BpuMI | CCSGG | 2 cut(s) | 497, 1726 |
| BsaHI | GRCGYC | 1 cut(s) | 1344 |
| BsaI | GGTCTC | 1 cut(s) | 1686 |
| BsaJI | CCNNGG | 4 cut(s) | 219, 317, 383, 1314 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 215, 245 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 41, 319, 448, 1143 |
| Bse1I | ACTGG | 1 cut(s) | 304 |
| Bse21I | CCTNAGG | 1 cut(s) | 1257 |
| Bse3DI | GCAATG | 2 cut(s) | 1217, 1863 |
| BseDI | CCNNGG | 4 cut(s) | 219, 317, 383, 1314 |
| BseGI | GGATG | 6 cut(s) | 472, 858, 1174, 1447, 1459, 1975 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 41, 319, 448, 1143 |
| BseMI | GCAATG | 2 cut(s) | 1217, 1863 |
| BseMII | CTCAG | 4 cut(s) | 105, 1058, 1115, 1215 |
| BseNI | ACTGG | 1 cut(s) | 304 |
| BseRI | GAGGAG | 5 cut(s) | 148, 173, 411, 632, 1070 |
| BseSI | GKGCMC | 1 cut(s) | 94 |
| BseXI | GCAGC | 3 cut(s) | 33, 859, 1297 |
| Bsh1236I | CGCG | 1 cut(s) | 1453 |
| BshFI | GGCC | 6 cut(s) | 72, 92, 312, 441, 1729, 1772 |
| BsiHKAI | GWGCWC | 1 cut(s) | 208 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1305 |
| BsiSI | CCGG | 2 cut(s) | 497, 1726 |
| BslFI | GGGAC | 2 cut(s) | 184, 1170 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 41, 319, 448, 1143 |
| BsmAI | GTCTC | 4 cut(s) | 1213, 1686, 1722, 1943 |
| BsmBI | CGTCTC | 1 cut(s) | 1722 |
| BsmFI | GGGAC | 2 cut(s) | 184, 1170 |
| BsnI | GGCC | 6 cut(s) | 72, 92, 312, 441, 1729, 1772 |
| Bso31I | GGTCTC | 1 cut(s) | 1686 |
| BsoBI | CYCGRG | 1 cut(s) | 1305 |
| Bsp119I | TTCGAA | 1 cut(s) | 977 |
| Bsp120I | GGGCCC | 1 cut(s) | 90 |
| Bsp1286I | GDGCHC | 2 cut(s) | 94, 208 |
| Bsp1407I | TGTACA | 1 cut(s) | 705 |
| Bsp143I | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| BspACI | CCGC | 3 cut(s) | 5, 850, 1451 |
| BspANI | GGCC | 6 cut(s) | 72, 92, 312, 441, 1729, 1772 |
| BspCNI | CTCAG | 4 cut(s) | 106, 1059, 1116, 1214 |
| BspFNI | CGCG | 1 cut(s) | 1453 |
| BspLI | GGNNCC | 3 cut(s) | 91, 92, 1195 |
| BspMI | ACCTGC | 4 cut(s) | 525, 1772, 1963, 1993 |
| BspOI | GCTAGC | 1 cut(s) | 935 |
| BspPI | GGATC | 2 cut(s) | 1904, 1992 |
| BspT104I | TTCGAA | 1 cut(s) | 977 |
| BspTNI | GGTCTC | 1 cut(s) | 1686 |
| BsrDI | GCAATG | 2 cut(s) | 1217, 1863 |
| BsrGI | TGTACA | 1 cut(s) | 705 |
| BsrI | ACTGG | 1 cut(s) | 304 |
| BssECI | CCNNGG | 4 cut(s) | 219, 317, 383, 1314 |
| BssMI | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| BssNI | GRCGYC | 1 cut(s) | 1344 |
| BssT1I | CCWWGG | 4 cut(s) | 219, 317, 383, 1314 |
| Bst4CI | ACNGT | 3 cut(s) | 1352, 1590, 1838 |
| Bst6I | CTCTTC | 2 cut(s) | 835, 1630 |
| BstACI | GRCGYC | 1 cut(s) | 1344 |
| BstAUI | TGTACA | 1 cut(s) | 705 |
| BstBI | TTCGAA | 1 cut(s) | 977 |
| BstC8I | GCNNGC | 3 cut(s) | 804, 933, 1272 |
| BstDEI | CTNAG | 7 cut(s) | 114, 671, 1067, 1124, 1201, 1257, 1775 |
| BstF5I | GGATG | 6 cut(s) | 472, 858, 1174, 1447, 1459, 1975 |
| BstFNI | CGCG | 1 cut(s) | 1453 |
| BstKTI | GATC | 6 cut(s) | 538, 946, 1554, 1689, 1899, 1987 |
| BstMAI | GTCTC | 4 cut(s) | 1213, 1686, 1722, 1943 |
| BstMBI | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 89, 1276, 1712, 1721, 1748, 1778, 1917 |
| BstNSI | RCATGY | 2 cut(s) | 1274, 1710 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 378 |
| BstSCI | CCNGG | 2 cut(s) | 495, 1724 |
| BstSLI | GKGCMC | 1 cut(s) | 94 |
| BstUI | CGCG | 1 cut(s) | 1453 |
| BstV1I | GCAGC | 3 cut(s) | 33, 859, 1297 |
| BstV2I | GAAGAC | 1 cut(s) | 1881 |
| BstX2I | RGATCY | 1 cut(s) | 1984 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 86, 1612 |
| BstYI | RGATCY | 1 cut(s) | 1984 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1257 |
| BsuRI | GGCC | 6 cut(s) | 72, 92, 312, 441, 1729, 1772 |
| BtrI | CACGTC | 1 cut(s) | 1092 |
| BtsCI | GGATG | 6 cut(s) | 472, 858, 1174, 1447, 1459, 1975 |
| BtsI | GCAGTG | 1 cut(s) | 577 |
| BtsIMutI | CAGTG | 3 cut(s) | 297, 577, 708 |
| BveI | ACCTGC | 4 cut(s) | 525, 1772, 1963, 1993 |
| Cac8I | GCNNGC | 3 cut(s) | 804, 933, 1272 |
| Cfr13I | GGNCC | 5 cut(s) | 90, 91, 380, 1620, 1771 |
| CseI | GACGC | 2 cut(s) | 38, 1704 |
| Csp6I | GTAC | 8 cut(s) | 307, 706, 1242, 1250, 1439, 1455, 1642, 1850 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1790, 1825 |
| CviAII | CATG | 3 cut(s) | 1271, 1609, 1707 |
| CviQI | GTAC | 8 cut(s) | 307, 706, 1242, 1250, 1439, 1455, 1642, 1850 |
| DdeI | CTNAG | 7 cut(s) | 114, 671, 1067, 1124, 1201, 1257, 1775 |
| DpnI | GATC | 6 cut(s) | 537, 945, 1553, 1688, 1898, 1986 |
| DpnII | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| DraI | TTTAAA | 1 cut(s) | 486 |
| EaeI | YGGCCR | 1 cut(s) | 310 |
| Eam1104I | CTCTTC | 2 cut(s) | 835, 1630 |
| EarI | CTCTTC | 2 cut(s) | 835, 1630 |
| Eco130I | CCWWGG | 4 cut(s) | 219, 317, 383, 1314 |
| Eco24I | GRGCYC | 1 cut(s) | 94 |
| Eco31I | GGTCTC | 1 cut(s) | 1686 |
| Eco47I | GGWCC | 2 cut(s) | 380, 1620 |
| Eco57I | CTGAAG | 1 cut(s) | 684 |
| Eco81I | CCTNAGG | 1 cut(s) | 1257 |
| Eco88I | CYCGRG | 1 cut(s) | 1305 |
| EcoO109I | RGGNCCY | 3 cut(s) | 90, 380, 1771 |
| EcoT14I | CCWWGG | 4 cut(s) | 219, 317, 383, 1314 |
| EcoT22I | ATGCAT | 1 cut(s) | 1272 |
| EcoT38I | GRGCYC | 1 cut(s) | 94 |
| ErhI | CCWWGG | 4 cut(s) | 219, 317, 383, 1314 |
| Esp3I | CGTCTC | 1 cut(s) | 1722 |
| FaeI | CATG | 3 cut(s) | 1274, 1612, 1710 |
| FaqI | GGGAC | 2 cut(s) | 184, 1170 |
| FatI | CATG | 3 cut(s) | 1270, 1608, 1706 |
| FauNDI | CATATG | 1 cut(s) | 1758 |
| FbaI | TGATCA | 2 cut(s) | 535, 1686 |
| Fnu4HI | GCNGC | 3 cut(s) | 47, 848, 1311 |
| FokI | GGATG | 6 cut(s) | 479, 865, 1181, 1434, 1446, 1982 |
| FriOI | GRGCYC | 1 cut(s) | 94 |
| Fsp4HI | GCNGC | 3 cut(s) | 47, 848, 1311 |
| FspBI | CTAG | 8 cut(s) | 65, 260, 318, 525, 932, 1523, 1814, 2013 |
| GluI | GCNGC | 3 cut(s) | 47, 848, 1311 |
| GsuI | CTGGAG | 2 cut(s) | 321, 1658 |
| HaeIII | GGCC | 6 cut(s) | 72, 92, 312, 441, 1729, 1772 |
| HapII | CCGG | 2 cut(s) | 497, 1726 |
| HgaI | GACGC | 2 cut(s) | 38, 1704 |
| Hin1I | GRCGYC | 1 cut(s) | 1344 |
| Hin1II | CATG | 3 cut(s) | 1274, 1612, 1710 |
| HincII | GTYRAC | 1 cut(s) | 1348 |
| HindII | GTYRAC | 1 cut(s) | 1348 |
| HindIII | AAGCTT | 3 cut(s) | 480, 800, 1185 |
| HpaII | CCGG | 2 cut(s) | 497, 1726 |
| HphI | GGTGA | 6 cut(s) | 506, 953, 1330, 1526, 1561, 1883 |
| Hpy166II | GTNNAC | 4 cut(s) | 307, 706, 1089, 1348 |
| Hpy188I | TCNGA | 9 cut(s) | 115, 266, 535, 969, 1068, 1182, 1198, 1204, 1691 |
| Hpy188III | TCNNGA | 8 cut(s) | 25, 355, 371, 632, 1218, 1396, 1534, 1967 |
| Hpy8I | GTNNAC | 4 cut(s) | 307, 706, 1089, 1348 |
| Hpy99I | CGWCG | 1 cut(s) | 1369 |
| HpyAV | CCTTC | 5 cut(s) | 62, 424, 558, 1473, 1887 |
| HpyCH4III | ACNGT | 3 cut(s) | 1352, 1590, 1838 |
| HpyCH4IV | ACGT | 7 cut(s) | 341, 580, 913, 1091, 1159, 1344, 1745 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 89, 1276, 1712, 1721, 1748, 1778, 1917 |
| HpyF3I | CTNAG | 7 cut(s) | 114, 671, 1067, 1124, 1201, 1257, 1775 |
| HpySE526I | ACGT | 7 cut(s) | 341, 580, 913, 1091, 1159, 1344, 1745 |
| Hsp92I | GRCGYC | 1 cut(s) | 1344 |
| Hsp92II | CATG | 3 cut(s) | 1274, 1612, 1710 |
| Ksp22I | TGATCA | 2 cut(s) | 535, 1686 |
| Kzo9I | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| LmnI | GCTCC | 3 cut(s) | 346, 567, 1341 |
| Lsp1109I | GCAGC | 3 cut(s) | 33, 859, 1297 |
| LweI | GCATC | 1 cut(s) | 1907 |
| MaeI | CTAG | 8 cut(s) | 65, 260, 318, 525, 932, 1523, 1814, 2013 |
| MaeII | ACGT | 7 cut(s) | 341, 580, 913, 1091, 1159, 1344, 1745 |
| MaeIII | GTNAC | 3 cut(s) | 508, 1132, 1832 |
| MalI | GATC | 6 cut(s) | 537, 945, 1553, 1688, 1898, 1986 |
| MboI | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| MboII | GAAGA | 8 cut(s) | 187, 281, 690, 822, 1031, 1388, 1617, 1886 |
| MflI | RGATCY | 1 cut(s) | 1984 |
| MhlI | GDGCHC | 2 cut(s) | 94, 208 |
| MluCI | AATT | 7 cut(s) | 55, 109, 444, 546, 605, 956, 1399 |
| MlyI | GAGTC | 7 cut(s) | 190, 253, 376, 539, 748, 818, 1193 |
| MmeI | TCCRAC | 5 cut(s) | 725, 1146, 1221, 1438, 1870 |
| Mph1103I | ATGCAT | 1 cut(s) | 1272 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1085 |
| MseI | TTAA | 6 cut(s) | 54, 186, 338, 405, 485, 1014 |
| MslI | CAYNNNNRTG | 3 cut(s) | 252, 302, 1701 |
| MspA1I | CMGCKG | 1 cut(s) | 850 |
| MspI | CCGG | 2 cut(s) | 497, 1726 |
| MspR9I | CCNGG | 2 cut(s) | 497, 1726 |
| MvnI | CGCG | 1 cut(s) | 1453 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 89, 1276, 1712, 1721, 1748, 1778, 1917 |
| NciI | CCSGG | 2 cut(s) | 497, 1726 |
| NdeI | CATATG | 1 cut(s) | 1758 |
| NdeII | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| NheI | GCTAGC | 1 cut(s) | 931 |
| NlaIII | CATG | 3 cut(s) | 1274, 1612, 1710 |
| NlaIV | GGNNCC | 3 cut(s) | 91, 92, 1195 |
| NmuCI | GTSAC | 2 cut(s) | 508, 1832 |
| NsiI | ATGCAT | 1 cut(s) | 1272 |
| NspI | RCATGY | 2 cut(s) | 1274, 1710 |
| NspV | TTCGAA | 1 cut(s) | 977 |
| OliI | CACNNNNGTG | 1 cut(s) | 302 |
| PaeI | GCATGC | 1 cut(s) | 1274 |
| PaqCI | CACCTGC | 2 cut(s) | 525, 1963 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1085 |
| PfeI | GAWTC | 5 cut(s) | 31, 124, 294, 412, 1177 |
| PkrI | GCNGC | 3 cut(s) | 48, 849, 1312 |
| PleI | GAGTC | 7 cut(s) | 189, 252, 375, 538, 748, 817, 1193 |
| PpsI | GAGTC | 7 cut(s) | 189, 252, 375, 538, 748, 817, 1193 |
| PpuMI | RGGWCCY | 1 cut(s) | 380 |
| PshAI | GACNNNNGTC | 1 cut(s) | 378 |
| Psp1406I | AACGTT | 1 cut(s) | 913 |
| Psp5II | RGGWCCY | 1 cut(s) | 380 |
| PspN4I | GGNNCC | 3 cut(s) | 91, 92, 1195 |
| PspOMI | GGGCCC | 1 cut(s) | 90 |
| PspPI | GGNCC | 5 cut(s) | 90, 91, 380, 1620, 1771 |
| PspPPI | RGGWCCY | 1 cut(s) | 380 |
| PsuI | RGATCY | 1 cut(s) | 1984 |
| RsaI | GTAC | 8 cut(s) | 308, 707, 1243, 1251, 1440, 1456, 1643, 1851 |
| RsaNI | GTAC | 8 cut(s) | 307, 706, 1242, 1250, 1439, 1455, 1642, 1850 |
| RseI | CAYNNNNRTG | 3 cut(s) | 252, 302, 1701 |
| SaqAI | TTAA | 6 cut(s) | 54, 186, 338, 405, 485, 1014 |
| SatI | GCNGC | 3 cut(s) | 47, 848, 1311 |
| Sau3AI | GATC | 6 cut(s) | 535, 943, 1551, 1686, 1896, 1984 |
| Sau96I | GGNCC | 5 cut(s) | 90, 91, 380, 1620, 1771 |
| SchI | GAGTC | 7 cut(s) | 190, 253, 376, 539, 748, 818, 1193 |
| ScrFI | CCNGG | 2 cut(s) | 497, 1726 |
| SduI | GDGCHC | 2 cut(s) | 94, 208 |
| SfaNI | GCATC | 1 cut(s) | 1907 |
| SfuI | TTCGAA | 1 cut(s) | 977 |
| SinI | GGWCC | 2 cut(s) | 380, 1620 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 252, 302, 1701 |
| SmlI | CTYRAG | 4 cut(s) | 23, 196, 353, 1245 |
| SmoI | CTYRAG | 4 cut(s) | 23, 196, 353, 1245 |
| SphI | GCATGC | 1 cut(s) | 1274 |
| Sse9I | AATT | 7 cut(s) | 55, 109, 444, 546, 605, 956, 1399 |
| SsiI | CCGC | 3 cut(s) | 5, 850, 1451 |
| SspI | AATATT | 2 cut(s) | 13, 1600 |
| SspMI | CTAG | 8 cut(s) | 65, 260, 318, 525, 932, 1523, 1814, 2013 |
| StyD4I | CCNGG | 2 cut(s) | 495, 1724 |
| StyI | CCWWGG | 4 cut(s) | 219, 317, 383, 1314 |
| TaaI | ACNGT | 3 cut(s) | 1352, 1590, 1838 |
| TaiI | ACGT | 7 cut(s) | 344, 583, 916, 1094, 1162, 1347, 1748 |
| TaqI | TCGA | 3 cut(s) | 977, 1217, 1364 |
| TasI | AATT | 7 cut(s) | 55, 109, 444, 546, 605, 956, 1399 |
| TatI | WGTACW | 2 cut(s) | 705, 1641 |
| TfiI | GAWTC | 5 cut(s) | 31, 124, 294, 412, 1177 |
| Tru1I | TTAA | 6 cut(s) | 54, 186, 338, 405, 485, 1014 |
| Tru9I | TTAA | 6 cut(s) | 54, 186, 338, 405, 485, 1014 |
| TscAI | CASTG | 3 cut(s) | 304, 577, 708 |
| TseFI | GTSAC | 2 cut(s) | 508, 1832 |
| TseI | GCWGC | 3 cut(s) | 46, 847, 1310 |
| Tsp45I | GTSAC | 2 cut(s) | 508, 1832 |
| TspDTI | ATGAA | 4 cut(s) | 44, 953, 1032, 1856 |
| TspRI | CASTG | 3 cut(s) | 304, 577, 708 |
| VpaK11BI | GGWCC | 2 cut(s) | 380, 1620 |
| XapI | RAATTY | 2 cut(s) | 605, 956 |
| XceI | RCATGY | 2 cut(s) | 1274, 1710 |
| XmaJI | CCTAGG | 1 cut(s) | 317 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1085 |
| XspI | CTAG | 8 cut(s) | 65, 260, 318, 525, 932, 1523, 1814, 2013 |
| ZraI | GACGTC | 1 cut(s) | 1345 |
| Zsp2I | ATGCAT | 1 cut(s) | 1272 |