ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 2 - 104 | 1.5e-12 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 120 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AgsI | TTSAA | 1 cut(s) | 311 |
| AjnI | CCWGG | 1 cut(s) | 124 |
| AluBI | AGCT | 3 cut(s) | 73, 166, 261 |
| AluI | AGCT | 3 cut(s) | 73, 166, 261 |
| Alw21I | GWGCWC | 1 cut(s) | 183 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| Alw44I | GTGCAC | 1 cut(s) | 179 |
| AoxI | GGCC | 1 cut(s) | 14 |
| ApaLI | GTGCAC | 1 cut(s) | 179 |
| AsuNHI | GCTAGC | 1 cut(s) | 166 |
| BaeGI | GKGCMC | 1 cut(s) | 183 |
| BauI | CACGAG | 1 cut(s) | 301 |
| Bbv12I | GWGCWC | 1 cut(s) | 183 |
| BccI | CCATC | 2 cut(s) | 188, 271 |
| BciT130I | CCWGG | 1 cut(s) | 126 |
| BclI | TGATCA | 1 cut(s) | 135 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 2 cut(s) | 152, 167 |
| BfuAI | ACCTGC | 1 cut(s) | 120 |
| Bme1390I | CCNGG | 1 cut(s) | 126 |
| BmrFI | CCNGG | 1 cut(s) | 126 |
| BmtI | GCTAGC | 1 cut(s) | 170 |
| BpuEI | CTTGAG | 1 cut(s) | 31 |
| BsaJI | CCNNGG | 2 cut(s) | 54, 124 |
| BsaWI | WCCGGW | 1 cut(s) | 88 |
| Bse3DI | GCAATG | 1 cut(s) | 205 |
| BseBI | CCWGG | 1 cut(s) | 126 |
| BseDI | CCNNGG | 2 cut(s) | 54, 124 |
| BseGI | GGATG | 1 cut(s) | 97 |
| BseMI | GCAATG | 1 cut(s) | 205 |
| BseMII | CTCAG | 1 cut(s) | 352 |
| BseSI | GKGCMC | 1 cut(s) | 183 |
| BshFI | GGCC | 1 cut(s) | 16 |
| BsiHKAI | GWGCWC | 1 cut(s) | 183 |
| BsiSI | CCGG | 1 cut(s) | 89 |
| BslFI | GGGAC | 1 cut(s) | 107 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsmFI | GGGAC | 1 cut(s) | 107 |
| BsnI | GGCC | 1 cut(s) | 16 |
| Bsp1286I | GDGCHC | 1 cut(s) | 183 |
| Bsp143I | GATC | 2 cut(s) | 96, 135 |
| BspANI | GGCC | 1 cut(s) | 16 |
| BspCNI | CTCAG | 1 cut(s) | 351 |
| BspMI | ACCTGC | 1 cut(s) | 120 |
| BspOI | GCTAGC | 1 cut(s) | 170 |
| BsrDI | GCAATG | 1 cut(s) | 205 |
| BssECI | CCNNGG | 2 cut(s) | 54, 124 |
| BssMI | GATC | 2 cut(s) | 96, 135 |
| BssSI | CACGAG | 1 cut(s) | 301 |
| BssT1I | CCWWGG | 1 cut(s) | 54 |
| Bst2BI | CACGAG | 1 cut(s) | 301 |
| Bst2UI | CCWGG | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 1 cut(s) | 168 |
| BstDEI | CTNAG | 1 cut(s) | 338 |
| BstF5I | GGATG | 1 cut(s) | 97 |
| BstKTI | GATC | 2 cut(s) | 99, 138 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 2 cut(s) | 96, 135 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 204 |
| BstNI | CCWGG | 1 cut(s) | 126 |
| BstSCI | CCNGG | 1 cut(s) | 124 |
| BstSLI | GKGCMC | 1 cut(s) | 183 |
| BsuRI | GGCC | 1 cut(s) | 16 |
| BtsCI | GGATG | 1 cut(s) | 97 |
| BtsI | GCAGTG | 1 cut(s) | 333 |
| BtsIMutI | CAGTG | 2 cut(s) | 138, 333 |
| BveI | ACCTGC | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 1 cut(s) | 168 |
| CviJI | RGCY | 8 cut(s) | 16, 23, 73, 158, 166, 207, 239, 261 |
| CviKI_1 | RGCY | 8 cut(s) | 16, 23, 73, 158, 166, 207, 239, 261 |
| DdeI | CTNAG | 1 cut(s) | 338 |
| DpnI | GATC | 2 cut(s) | 98, 137 |
| DpnII | GATC | 2 cut(s) | 96, 135 |
| Eco130I | CCWWGG | 1 cut(s) | 54 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| EcoRII | CCWGG | 1 cut(s) | 124 |
| EcoT14I | CCWWGG | 1 cut(s) | 54 |
| ErhI | CCWWGG | 1 cut(s) | 54 |
| FaiI | YATR | 4 cut(s) | 212, 243, 316, 318 |
| FaqI | GGGAC | 1 cut(s) | 107 |
| FbaI | TGATCA | 1 cut(s) | 135 |
| FokI | GGATG | 1 cut(s) | 104 |
| FspBI | CTAG | 2 cut(s) | 152, 167 |
| HaeIII | GGCC | 1 cut(s) | 16 |
| HapII | CCGG | 1 cut(s) | 89 |
| HpaII | CCGG | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 1 cut(s) | 181 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 345 |
| Hpy8I | GTNNAC | 1 cut(s) | 181 |
| HpyAV | CCTTC | 1 cut(s) | 197 |
| HpyCH4V | TGCA | 2 cut(s) | 181, 326 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 204 |
| HpyF3I | CTNAG | 1 cut(s) | 338 |
| Ksp22I | TGATCA | 1 cut(s) | 135 |
| Kzo9I | GATC | 2 cut(s) | 96, 135 |
| LmnI | GCTCC | 1 cut(s) | 258 |
| LpnPI | CCDG | 4 cut(s) | 102, 111, 115, 138 |
| MaeI | CTAG | 2 cut(s) | 152, 167 |
| MalI | GATC | 2 cut(s) | 98, 137 |
| MboI | GATC | 2 cut(s) | 96, 135 |
| MhlI | GDGCHC | 1 cut(s) | 183 |
| MluCI | AATT | 1 cut(s) | 221 |
| MnlI | CCTC | 1 cut(s) | 6 |
| MseI | TTAA | 1 cut(s) | 266 |
| MspI | CCGG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 1 cut(s) | 126 |
| MvaI | CCWGG | 1 cut(s) | 126 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 204 |
| NdeII | GATC | 2 cut(s) | 96, 135 |
| NheI | GCTAGC | 1 cut(s) | 166 |
| Psp6I | CCWGG | 1 cut(s) | 124 |
| PspGI | CCWGG | 1 cut(s) | 124 |
| SaqAI | TTAA | 1 cut(s) | 266 |
| Sau3AI | GATC | 2 cut(s) | 96, 135 |
| ScrFI | CCNGG | 1 cut(s) | 126 |
| SduI | GDGCHC | 1 cut(s) | 183 |
| SetI | ASST | 5 cut(s) | 60, 75, 134, 168, 263 |
| SmlI | CTYRAG | 1 cut(s) | 10 |
| SmoI | CTYRAG | 1 cut(s) | 10 |
| Sse9I | AATT | 1 cut(s) | 221 |
| SspMI | CTAG | 2 cut(s) | 152, 167 |
| StyD4I | CCNGG | 1 cut(s) | 124 |
| StyI | CCWWGG | 1 cut(s) | 54 |
| TasI | AATT | 1 cut(s) | 221 |
| Tru1I | TTAA | 1 cut(s) | 266 |
| Tru9I | TTAA | 1 cut(s) | 266 |
| TscAI | CASTG | 2 cut(s) | 145, 333 |
| TspDTI | ATGAA | 1 cut(s) | 216 |
| TspRI | CASTG | 2 cut(s) | 145, 333 |
| VneI | GTGCAC | 1 cut(s) | 179 |
| XspI | CTAG | 2 cut(s) | 152, 167 |