Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 61 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 528 |
| AciI | CCGC | 3 cut(s) | 362, 434, 488 |
| AcyI | GRCGYC | 1 cut(s) | 493 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 152, 418, 507, 528 |
| AgsI | TTSAA | 3 cut(s) | 431, 449, 457 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 579, 611 |
| AluBI | AGCT | 3 cut(s) | 56, 104, 127 |
| AluI | AGCT | 3 cut(s) | 56, 104, 127 |
| Alw26I | GTCTC | 2 cut(s) | 30, 321 |
| AoxI | GGCC | 3 cut(s) | 6, 537, 568 |
| ApeKI | GCWGC | 2 cut(s) | 124, 298 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 200, 232 |
| AsuC2I | CCSGG | 1 cut(s) | 66 |
| AsuHPI | GGTGA | 1 cut(s) | 448 |
| BanI | GGYRCC | 1 cut(s) | 61 |
| BauI | CACGAG | 1 cut(s) | 324 |
| BbvI | GCAGC | 2 cut(s) | 136, 285 |
| BccI | CCATC | 2 cut(s) | 542, 554 |
| BceAI | ACGGC | 1 cut(s) | 480 |
| BcnI | CCSGG | 1 cut(s) | 66 |
| BcoDI | GTCTC | 2 cut(s) | 30, 321 |
| BfaI | CTAG | 5 cut(s) | 12, 30, 263, 474, 613 |
| BfmI | CTRYAG | 1 cut(s) | 299 |
| BisI | GCNGC | 2 cut(s) | 125, 299 |
| BlsI | GCNGC | 2 cut(s) | 126, 300 |
| Bme1390I | CCNGG | 1 cut(s) | 66 |
| BmiI | GGNNCC | 2 cut(s) | 63, 144 |
| BmrFI | CCNGG | 1 cut(s) | 66 |
| Bpu10I | CCTNAGC | 1 cut(s) | 57 |
| BpuEI | CTTGAG | 1 cut(s) | 518 |
| BpuMI | CCSGG | 1 cut(s) | 66 |
| BsaHI | GRCGYC | 1 cut(s) | 493 |
| BsaJI | CCNNGG | 2 cut(s) | 65, 147 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 579, 609 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 152, 418, 507, 528 |
| Bse1I | ACTGG | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 65, 147 |
| BseGI | GGATG | 1 cut(s) | 553 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 152, 418, 507, 528 |
| BseNI | ACTGG | 1 cut(s) | 525 |
| BseXI | GCAGC | 2 cut(s) | 136, 285 |
| BshFI | GGCC | 3 cut(s) | 8, 539, 570 |
| BshNI | GGYRCC | 1 cut(s) | 61 |
| BsiSI | CCGG | 1 cut(s) | 65 |
| BslFI | GGGAC | 3 cut(s) | 239, 483, 504 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 152, 418, 507, 528 |
| BsmAI | GTCTC | 2 cut(s) | 30, 321 |
| BsmBI | CGTCTC | 1 cut(s) | 30 |
| BsmFI | GGGAC | 3 cut(s) | 239, 483, 504 |
| BsnI | GGCC | 3 cut(s) | 8, 539, 570 |
| Bsp143I | GATC | 1 cut(s) | 503 |
| BspACI | CCGC | 3 cut(s) | 362, 434, 488 |
| BspANI | GGCC | 3 cut(s) | 8, 539, 570 |
| BspLI | GGNNCC | 2 cut(s) | 63, 144 |
| BspMAI | CTGCAG | 1 cut(s) | 303 |
| BspT107I | GGYRCC | 1 cut(s) | 61 |
| BsrI | ACTGG | 1 cut(s) | 525 |
| BssECI | CCNNGG | 2 cut(s) | 65, 147 |
| BssMI | GATC | 1 cut(s) | 503 |
| BssNI | GRCGYC | 1 cut(s) | 493 |
| BssSI | CACGAG | 1 cut(s) | 324 |
| BssT1I | CCWWGG | 1 cut(s) | 147 |
| Bst2BI | CACGAG | 1 cut(s) | 324 |
| Bst4CI | ACNGT | 3 cut(s) | 205, 444, 481 |
| BstACI | GRCGYC | 1 cut(s) | 493 |
| BstC8I | GCNNGC | 1 cut(s) | 568 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 416 |
| BstF5I | GGATG | 1 cut(s) | 553 |
| BstKTI | GATC | 1 cut(s) | 506 |
| BstMAI | GTCTC | 2 cut(s) | 30, 321 |
| BstMBI | GATC | 1 cut(s) | 503 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 263 |
| BstSCI | CCNGG | 1 cut(s) | 64 |
| BstSFI | CTRYAG | 1 cut(s) | 299 |
| BstV1I | GCAGC | 2 cut(s) | 136, 285 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 578 |
| BsuRI | GGCC | 3 cut(s) | 8, 539, 570 |
| BtsCI | GGATG | 1 cut(s) | 553 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 440 |
| Cac8I | GCNNGC | 1 cut(s) | 568 |
| CseI | GACGC | 2 cut(s) | 12, 501 |
| CviAII | CATG | 4 cut(s) | 87, 254, 507, 544 |
| CviJI | RGCY | 9 cut(s) | 8, 56, 104, 127, 298, 532, 539, 570, 612 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 56, 104, 127, 298, 532, 539, 570, 612 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DpnI | GATC | 1 cut(s) | 505 |
| DpnII | GATC | 1 cut(s) | 503 |
| Eco130I | CCWWGG | 1 cut(s) | 147 |
| Eco147I | AGGCCT | 1 cut(s) | 8 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 416 |
| EcoT14I | CCWWGG | 1 cut(s) | 147 |
| ErhI | CCWWGG | 1 cut(s) | 147 |
| Esp3I | CGTCTC | 1 cut(s) | 30 |
| FaeI | CATG | 4 cut(s) | 90, 257, 510, 547 |
| FaqI | GGGAC | 3 cut(s) | 239, 483, 504 |
| FatI | CATG | 4 cut(s) | 86, 253, 506, 543 |
| FauI | CCCGC | 1 cut(s) | 481 |
| Fnu4HI | GCNGC | 2 cut(s) | 125, 299 |
| FokI | GGATG | 1 cut(s) | 560 |
| Fsp4HI | GCNGC | 2 cut(s) | 125, 299 |
| FspBI | CTAG | 5 cut(s) | 12, 30, 263, 474, 613 |
| GluI | GCNGC | 2 cut(s) | 125, 299 |
| HaeIII | GGCC | 3 cut(s) | 8, 539, 570 |
| HapII | CCGG | 1 cut(s) | 65 |
| HgaI | GACGC | 2 cut(s) | 12, 501 |
| Hin1I | GRCGYC | 1 cut(s) | 493 |
| Hin1II | CATG | 4 cut(s) | 90, 257, 510, 547 |
| HinfI | GANTC | 2 cut(s) | 185, 511 |
| HpaII | CCGG | 1 cut(s) | 65 |
| HphI | GGTGA | 1 cut(s) | 448 |
| Hpy166II | GTNNAC | 1 cut(s) | 208 |
| Hpy188III | TCNNGA | 3 cut(s) | 224, 326, 599 |
| Hpy8I | GTNNAC | 1 cut(s) | 208 |
| HpyAV | CCTTC | 6 cut(s) | 64, 85, 132, 255, 353, 599 |
| HpyCH4III | ACNGT | 3 cut(s) | 205, 444, 481 |
| HpyCH4V | TGCA | 2 cut(s) | 82, 301 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 263 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 493 |
| Hsp92II | CATG | 4 cut(s) | 90, 257, 510, 547 |
| Kzo9I | GATC | 1 cut(s) | 503 |
| LpnPI | CCDG | 5 cut(s) | 78, 332, 404, 538, 552 |
| Lsp1109I | GCAGC | 2 cut(s) | 136, 285 |
| MaeI | CTAG | 5 cut(s) | 12, 30, 263, 474, 613 |
| MaeIII | GTNAC | 1 cut(s) | 436 |
| MalI | GATC | 1 cut(s) | 505 |
| MboI | GATC | 1 cut(s) | 503 |
| MboII | GAAGA | 4 cut(s) | 184, 191, 264, 341 |
| MlyI | GAGTC | 2 cut(s) | 194, 520 |
| MnlI | CCTC | 7 cut(s) | 19, 149, 169, 286, 422, 525, 569 |
| MslI | CAYNNNNRTG | 1 cut(s) | 576 |
| MspI | CCGG | 1 cut(s) | 65 |
| MspR9I | CCNGG | 1 cut(s) | 66 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 263 |
| NciI | CCSGG | 1 cut(s) | 66 |
| NdeII | GATC | 1 cut(s) | 503 |
| NlaIII | CATG | 4 cut(s) | 90, 257, 510, 547 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 144 |
| NmuCI | GTSAC | 1 cut(s) | 436 |
| PceI | AGGCCT | 1 cut(s) | 8 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 499 |
| PflFI | GACNNNGTC | 1 cut(s) | 495 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 528 |
| PkrI | GCNGC | 2 cut(s) | 126, 300 |
| PleI | GAGTC | 2 cut(s) | 193, 519 |
| PpsI | GAGTC | 2 cut(s) | 193, 519 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 144 |
| PstI | CTGCAG | 1 cut(s) | 303 |
| PsyI | GACNNNGTC | 1 cut(s) | 495 |
| RseI | CAYNNNNRTG | 1 cut(s) | 576 |
| SatI | GCNGC | 2 cut(s) | 125, 299 |
| Sau3AI | GATC | 1 cut(s) | 503 |
| SchI | GAGTC | 2 cut(s) | 194, 520 |
| ScrFI | CCNGG | 1 cut(s) | 66 |
| SetI | ASST | 9 cut(s) | 58, 63, 75, 96, 106, 129, 423, 580, 610 |
| SfcI | CTRYAG | 1 cut(s) | 299 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 576 |
| SmlI | CTYRAG | 1 cut(s) | 533 |
| SmoI | CTYRAG | 1 cut(s) | 533 |
| SseBI | AGGCCT | 1 cut(s) | 8 |
| SsiI | CCGC | 3 cut(s) | 362, 434, 488 |
| SspMI | CTAG | 5 cut(s) | 12, 30, 263, 474, 613 |
| StuI | AGGCCT | 1 cut(s) | 8 |
| StyD4I | CCNGG | 1 cut(s) | 64 |
| StyI | CCWWGG | 1 cut(s) | 147 |
| TaaI | ACNGT | 3 cut(s) | 205, 444, 481 |
| TaqI | TCGA | 1 cut(s) | 136 |
| TscAI | CASTG | 2 cut(s) | 208, 447 |
| TseFI | GTSAC | 1 cut(s) | 436 |
| TseI | GCWGC | 2 cut(s) | 124, 298 |
| Tsp45I | GTSAC | 1 cut(s) | 436 |
| TspDTI | ATGAA | 1 cut(s) | 242 |
| TspRI | CASTG | 2 cut(s) | 208, 447 |
| Tth111I | GACNNNGTC | 1 cut(s) | 495 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 528 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 416 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 525 |
| XspI | CTAG | 5 cut(s) | 12, 30, 263, 474, 613 |