Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 41, 704 |
| AciI | CCGC | 1 cut(s) | 147 |
| AcsI | RAATTY | 4 cut(s) | 232, 321, 443, 489 |
| AcyI | GRCGYC | 1 cut(s) | 406 |
| AfaI | GTAC | 1 cut(s) | 142 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 401, 402, 481, 603 |
| AgsI | TTSAA | 2 cut(s) | 83, 310 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 51, 83 |
| AluBI | AGCT | 4 cut(s) | 90, 244, 432, 511 |
| AluI | AGCT | 4 cut(s) | 90, 244, 432, 511 |
| Alw21I | GWGCWC | 1 cut(s) | 246 |
| Alw26I | GTCTC | 1 cut(s) | 616 |
| ApeKI | GCWGC | 1 cut(s) | 508 |
| ApoI | RAATTY | 4 cut(s) | 232, 321, 443, 489 |
| AspLEI | GCGC | 1 cut(s) | 519 |
| AspS9I | GGNCC | 1 cut(s) | 472 |
| AsuHPI | GGTGA | 4 cut(s) | 142, 311, 461, 586 |
| AvaII | GGWCC | 1 cut(s) | 472 |
| BanII | GRGCYC | 1 cut(s) | 246 |
| BbsI | GAAGAC | 1 cut(s) | 167 |
| Bbv12I | GWGCWC | 1 cut(s) | 246 |
| BbvI | GCAGC | 1 cut(s) | 520 |
| BccI | CCATC | 3 cut(s) | 419, 446, 479 |
| BcoDI | GTCTC | 1 cut(s) | 616 |
| BfaI | CTAG | 1 cut(s) | 440 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BisI | GCNGC | 2 cut(s) | 148, 509 |
| BlsI | GCNGC | 2 cut(s) | 149, 510 |
| Bme18I | GGWCC | 1 cut(s) | 472 |
| BmgT120I | GGNCC | 1 cut(s) | 472 |
| BmrI | ACTGGG | 1 cut(s) | 411 |
| BmsI | GCATC | 2 cut(s) | 258, 597 |
| BmuI | ACTGGG | 1 cut(s) | 411 |
| BpiI | GAAGAC | 1 cut(s) | 167 |
| BpmI | CTGGAG | 2 cut(s) | 172, 596 |
| Bpu10I | CCTNAGC | 1 cut(s) | 102 |
| BpuEI | CTTGAG | 1 cut(s) | 640 |
| Bsa29I | ATCGAT | 2 cut(s) | 672, 695 |
| BsaHI | GRCGYC | 1 cut(s) | 406 |
| BsaJI | CCNNGG | 2 cut(s) | 67, 96 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 401, 402, 481, 603 |
| Bse1I | ACTGG | 2 cut(s) | 181, 406 |
| BseCI | ATCGAT | 2 cut(s) | 672, 695 |
| BseDI | CCNNGG | 2 cut(s) | 67, 96 |
| BseGI | GGATG | 4 cut(s) | 40, 430, 490, 612 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 401, 402, 481, 603 |
| BseNI | ACTGG | 2 cut(s) | 181, 406 |
| BseXI | GCAGC | 1 cut(s) | 520 |
| BsgI | GTGCAG | 1 cut(s) | 227 |
| BshVI | ATCGAT | 2 cut(s) | 672, 695 |
| BsiHKAI | GWGCWC | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 401, 402, 481, 603 |
| BsmAI | GTCTC | 1 cut(s) | 616 |
| Bsp1286I | GDGCHC | 1 cut(s) | 246 |
| Bsp143I | GATC | 2 cut(s) | 669, 673 |
| BspACI | CCGC | 1 cut(s) | 147 |
| BspDI | ATCGAT | 2 cut(s) | 672, 695 |
| BspHI | TCATGA | 1 cut(s) | 228 |
| BsrI | ACTGG | 2 cut(s) | 181, 406 |
| BssECI | CCNNGG | 2 cut(s) | 67, 96 |
| BssMI | GATC | 2 cut(s) | 669, 673 |
| BssNI | GRCGYC | 1 cut(s) | 406 |
| BssT1I | CCWWGG | 2 cut(s) | 67, 96 |
| BstACI | GRCGYC | 1 cut(s) | 406 |
| BstC8I | GCNNGC | 4 cut(s) | 329, 333, 502, 506 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstF5I | GGATG | 4 cut(s) | 40, 430, 490, 612 |
| BstHHI | GCGC | 1 cut(s) | 519 |
| BstKTI | GATC | 2 cut(s) | 672, 676 |
| BstMAI | GTCTC | 1 cut(s) | 616 |
| BstMBI | GATC | 2 cut(s) | 669, 673 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 514, 571 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstV1I | GCAGC | 1 cut(s) | 520 |
| BstV2I | GAAGAC | 1 cut(s) | 167 |
| Bsu15I | ATCGAT | 2 cut(s) | 672, 695 |
| BsuTUI | ATCGAT | 2 cut(s) | 672, 695 |
| BtsCI | GGATG | 4 cut(s) | 40, 430, 490, 612 |
| Cac8I | GCNNGC | 4 cut(s) | 329, 333, 502, 506 |
| CciI | TCATGA | 1 cut(s) | 228 |
| CfoI | GCGC | 1 cut(s) | 519 |
| Cfr13I | GGNCC | 1 cut(s) | 472 |
| ClaI | ATCGAT | 2 cut(s) | 672, 695 |
| CseI | GACGC | 1 cut(s) | 395 |
| Csp6I | GTAC | 1 cut(s) | 141 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 623, 658 |
| CviAII | CATG | 3 cut(s) | 56, 229, 532 |
| CviQI | GTAC | 1 cut(s) | 141 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| DpnI | GATC | 2 cut(s) | 671, 675 |
| DpnII | GATC | 2 cut(s) | 669, 673 |
| Ecl136II | GAGCTC | 1 cut(s) | 244 |
| Eco130I | CCWWGG | 2 cut(s) | 67, 96 |
| Eco24I | GRGCYC | 1 cut(s) | 246 |
| Eco47I | GGWCC | 1 cut(s) | 472 |
| Eco53kI | GAGCTC | 1 cut(s) | 244 |
| EcoICRI | GAGCTC | 1 cut(s) | 244 |
| EcoRI | GAATTC | 1 cut(s) | 443 |
| EcoT14I | CCWWGG | 2 cut(s) | 67, 96 |
| EcoT22I | ATGCAT | 1 cut(s) | 273 |
| EcoT38I | GRGCYC | 1 cut(s) | 246 |
| ErhI | CCWWGG | 2 cut(s) | 67, 96 |
| FaeI | CATG | 3 cut(s) | 59, 232, 535 |
| FatI | CATG | 3 cut(s) | 55, 228, 531 |
| FauNDI | CATATG | 2 cut(s) | 551, 682 |
| Fnu4HI | GCNGC | 2 cut(s) | 148, 509 |
| FokI | GGATG | 4 cut(s) | 47, 437, 497, 619 |
| FriOI | GRGCYC | 1 cut(s) | 246 |
| Fsp4HI | GCNGC | 2 cut(s) | 148, 509 |
| FspBI | CTAG | 1 cut(s) | 440 |
| GlaI | GCGC | 1 cut(s) | 518 |
| GluI | GCNGC | 2 cut(s) | 148, 509 |
| GsuI | CTGGAG | 2 cut(s) | 172, 596 |
| HgaI | GACGC | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 519 |
| Hin1I | GRCGYC | 1 cut(s) | 406 |
| Hin1II | CATG | 3 cut(s) | 59, 232, 535 |
| Hin6I | GCGC | 1 cut(s) | 517 |
| HinP1I | GCGC | 1 cut(s) | 517 |
| HinfI | GANTC | 1 cut(s) | 72 |
| HphI | GGTGA | 4 cut(s) | 142, 311, 461, 586 |
| Hpy188I | TCNGA | 2 cut(s) | 411, 678 |
| Hpy188III | TCNNGA | 2 cut(s) | 229, 247 |
| HpyAV | CCTTC | 2 cut(s) | 121, 621 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 208, 271, 500, 508 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 514, 571 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| Hsp92I | GRCGYC | 1 cut(s) | 406 |
| Hsp92II | CATG | 3 cut(s) | 59, 232, 535 |
| HspAI | GCGC | 1 cut(s) | 517 |
| Kzo9I | GATC | 2 cut(s) | 669, 673 |
| LmnI | GCTCC | 2 cut(s) | 249, 396 |
| LpnPI | CCDG | 6 cut(s) | 136, 162, 313, 387, 486, 560 |
| Lsp1109I | GCAGC | 1 cut(s) | 520 |
| LweI | GCATC | 2 cut(s) | 258, 597 |
| MaeI | CTAG | 1 cut(s) | 440 |
| MaeIII | GTNAC | 2 cut(s) | 299, 650 |
| MalI | GATC | 2 cut(s) | 671, 675 |
| MboI | GATC | 2 cut(s) | 669, 673 |
| MboII | GAAGA | 4 cut(s) | 26, 172, 328, 679 |
| MhlI | GDGCHC | 1 cut(s) | 246 |
| MluCI | AATT | 9 cut(s) | 27, 84, 186, 232, 305, 321, 443, 489, 590 |
| MlyI | GAGTC | 1 cut(s) | 66 |
| MnlI | CCTC | 7 cut(s) | 147, 358, 362, 475, 539, 549, 555 |
| Mph1103I | ATGCAT | 1 cut(s) | 273 |
| MseI | TTAA | 2 cut(s) | 119, 195 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 514, 571 |
| NdeI | CATATG | 2 cut(s) | 551, 682 |
| NdeII | GATC | 2 cut(s) | 669, 673 |
| NlaIII | CATG | 3 cut(s) | 59, 232, 535 |
| NmuCI | GTSAC | 1 cut(s) | 299 |
| NsiI | ATGCAT | 1 cut(s) | 273 |
| PagI | TCATGA | 1 cut(s) | 228 |
| PkrI | GCNGC | 2 cut(s) | 149, 510 |
| PleI | GAGTC | 1 cut(s) | 66 |
| PpsI | GAGTC | 1 cut(s) | 66 |
| PsiI | TTATAA | 2 cut(s) | 41, 704 |
| Psp124BI | GAGCTC | 1 cut(s) | 246 |
| PspPI | GGNCC | 1 cut(s) | 472 |
| RsaI | GTAC | 1 cut(s) | 142 |
| RsaNI | GTAC | 1 cut(s) | 141 |
| SacI | GAGCTC | 1 cut(s) | 246 |
| SaqAI | TTAA | 2 cut(s) | 119, 195 |
| SatI | GCNGC | 2 cut(s) | 148, 509 |
| Sau3AI | GATC | 2 cut(s) | 669, 673 |
| Sau96I | GGNCC | 1 cut(s) | 472 |
| SchI | GAGTC | 1 cut(s) | 66 |
| SduI | GDGCHC | 1 cut(s) | 246 |
| SetI | ASST | 9 cut(s) | 69, 92, 132, 224, 246, 373, 434, 513, 620 |
| SfaNI | GCATC | 2 cut(s) | 258, 597 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| SinI | GGWCC | 1 cut(s) | 472 |
| SmlI | CTYRAG | 1 cut(s) | 619 |
| SmoI | CTYRAG | 1 cut(s) | 619 |
| Sse9I | AATT | 9 cut(s) | 27, 84, 186, 232, 305, 321, 443, 489, 590 |
| SsiI | CCGC | 1 cut(s) | 147 |
| SspI | AATATT | 2 cut(s) | 290, 601 |
| SspMI | CTAG | 1 cut(s) | 440 |
| SstI | GAGCTC | 1 cut(s) | 246 |
| StyI | CCWWGG | 2 cut(s) | 67, 96 |
| TaqI | TCGA | 3 cut(s) | 614, 672, 695 |
| TasI | AATT | 9 cut(s) | 27, 84, 186, 232, 305, 321, 443, 489, 590 |
| TauI | GCSGC | 1 cut(s) | 150 |
| Tru1I | TTAA | 2 cut(s) | 119, 195 |
| Tru9I | TTAA | 2 cut(s) | 119, 195 |
| TseFI | GTSAC | 1 cut(s) | 299 |
| TseI | GCWGC | 1 cut(s) | 508 |
| Tsp45I | GTSAC | 1 cut(s) | 299 |
| TspDTI | ATGAA | 2 cut(s) | 72, 245 |
| VpaK11BI | GGWCC | 1 cut(s) | 472 |
| XapI | RAATTY | 4 cut(s) | 232, 321, 443, 489 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 482 |
| XspI | CTAG | 1 cut(s) | 440 |
| Zsp2I | ATGCAT | 1 cut(s) | 273 |