Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 204 - 273 | 4.8e-07 | IBR domain, a half RING-finger domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 202 |
| AccBSI | CCGCTC | 1 cut(s) | 726 |
| AccII | CGCG | 2 cut(s) | 104, 644 |
| AciI | CCGC | 5 cut(s) | 104, 644, 726, 852, 901 |
| AclWI | GGATC | 4 cut(s) | 151, 193, 229, 252 |
| AcoI | YGGCCR | 1 cut(s) | 105 |
| AcsI | RAATTY | 2 cut(s) | 422, 809 |
| AcuI | CTGAAG | 2 cut(s) | 684, 857 |
| AfaI | GTAC | 6 cut(s) | 319, 487, 509, 617, 669, 875 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 202, 382, 529 |
| AgsI | TTSAA | 4 cut(s) | 622, 634, 655, 814 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 454 |
| AhlI | ACTAGT | 3 cut(s) | 281, 305, 314 |
| AjiI | CACGTC | 1 cut(s) | 456 |
| AjnI | CCWGG | 1 cut(s) | 15 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 208, 240 |
| AluBI | AGCT | 2 cut(s) | 439, 945 |
| AluI | AGCT | 2 cut(s) | 439, 945 |
| Alw26I | GTCTC | 1 cut(s) | 66 |
| AlwI | GGATC | 4 cut(s) | 151, 193, 229, 252 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 835, 945 |
| Ama87I | CYCGRG | 1 cut(s) | 503 |
| AoxI | GGCC | 1 cut(s) | 105 |
| ApeKI | GCWGC | 6 cut(s) | 44, 601, 912, 942, 945, 948 |
| ApoI | RAATTY | 2 cut(s) | 422, 809 |
| AspLEI | GCGC | 1 cut(s) | 644 |
| AsuC2I | CCSGG | 3 cut(s) | 470, 598, 1055 |
| AsuHPI | GGTGA | 4 cut(s) | 19, 40, 866, 880 |
| AvaI | CYCGRG | 1 cut(s) | 503 |
| BaeGI | GKGCMC | 1 cut(s) | 470 |
| BbvI | GCAGC | 6 cut(s) | 56, 588, 899, 932, 954, 960 |
| BccI | CCATC | 6 cut(s) | 107, 232, 540, 613, 859, 1015 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 82, 116 |
| BciT130I | CCWGG | 1 cut(s) | 17 |
| BciVI | GTATCC | 1 cut(s) | 23 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BcnI | CCSGG | 3 cut(s) | 470, 598, 1055 |
| BcoDI | GTCTC | 1 cut(s) | 66 |
| BcuI | ACTAGT | 3 cut(s) | 281, 305, 314 |
| BfaI | CTAG | 4 cut(s) | 282, 306, 315, 759 |
| BfmI | CTRYAG | 2 cut(s) | 481, 946 |
| BfuI | GTATCC | 1 cut(s) | 23 |
| BisI | GCNGC | 8 cut(s) | 45, 105, 602, 645, 913, 943, 946, 949 |
| BlsI | GCNGC | 8 cut(s) | 46, 106, 603, 646, 914, 944, 947, 950 |
| BmcAI | AGTACT | 3 cut(s) | 487, 509, 617 |
| Bme1390I | CCNGG | 4 cut(s) | 17, 470, 598, 1055 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 454 |
| BmeT110I | CYCGRG | 1 cut(s) | 503 |
| BmgBI | CACGTC | 1 cut(s) | 456 |
| BmiI | GGNNCC | 1 cut(s) | 795 |
| BmrFI | CCNGG | 4 cut(s) | 17, 470, 598, 1055 |
| BmsI | GCATC | 3 cut(s) | 253, 744, 960 |
| BpmI | CTGGAG | 1 cut(s) | 510 |
| BpuMI | CCSGG | 3 cut(s) | 470, 598, 1055 |
| Bsa29I | ATCGAT | 1 cut(s) | 544 |
| BsaI | GGTCTC | 1 cut(s) | 66 |
| BsaJI | CCNNGG | 4 cut(s) | 115, 137, 179, 215 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 202, 382, 529 |
| Bse1I | ACTGG | 2 cut(s) | 337, 493 |
| BseBI | CCWGG | 1 cut(s) | 17 |
| BseCI | ATCGAT | 1 cut(s) | 544 |
| BseDI | CCNNGG | 4 cut(s) | 115, 137, 179, 215 |
| BseGI | GGATG | 4 cut(s) | 169, 538, 870, 891 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 202, 382, 529 |
| BseNI | ACTGG | 2 cut(s) | 337, 493 |
| BseRI | GAGGAG | 1 cut(s) | 348 |
| BseSI | GKGCMC | 1 cut(s) | 470 |
| BseXI | GCAGC | 6 cut(s) | 56, 588, 899, 932, 954, 960 |
| BsgI | GTGCAG | 1 cut(s) | 665 |
| Bsh1236I | CGCG | 2 cut(s) | 104, 644 |
| BshFI | GGCC | 1 cut(s) | 107 |
| BshVI | ATCGAT | 1 cut(s) | 544 |
| BsiHKCI | CYCGRG | 1 cut(s) | 503 |
| BsiSI | CCGG | 4 cut(s) | 470, 514, 597, 1055 |
| BslFI | GGGAC | 2 cut(s) | 390, 612 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 202, 382, 529 |
| BsmAI | GTCTC | 1 cut(s) | 66 |
| BsmFI | GGGAC | 2 cut(s) | 390, 612 |
| BsmI | GAATGC | 1 cut(s) | 371 |
| BsnI | GGCC | 1 cut(s) | 107 |
| Bso31I | GGTCTC | 1 cut(s) | 66 |
| BsoBI | CYCGRG | 1 cut(s) | 503 |
| Bsp1286I | GDGCHC | 1 cut(s) | 470 |
| Bsp143I | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| BspACI | CCGC | 5 cut(s) | 104, 644, 726, 852, 901 |
| BspANI | GGCC | 1 cut(s) | 107 |
| BspDI | ATCGAT | 1 cut(s) | 544 |
| BspFNI | CGCG | 2 cut(s) | 104, 644 |
| BspLI | GGNNCC | 1 cut(s) | 795 |
| BspMAI | CTGCAG | 2 cut(s) | 485, 950 |
| BspPI | GGATC | 4 cut(s) | 151, 193, 229, 252 |
| BspTNI | GGTCTC | 1 cut(s) | 66 |
| BsrBI | CCGCTC | 1 cut(s) | 726 |
| BsrI | ACTGG | 2 cut(s) | 337, 493 |
| BssECI | CCNNGG | 4 cut(s) | 115, 137, 179, 215 |
| BssMI | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| BssT1I | CCWWGG | 4 cut(s) | 115, 137, 179, 215 |
| Bst2UI | CCWGG | 1 cut(s) | 17 |
| Bst4CI | ACNGT | 3 cut(s) | 7, 125, 626 |
| Bst6I | CTCTTC | 1 cut(s) | 31 |
| BstC8I | GCNNGC | 1 cut(s) | 640 |
| BstDEI | CTNAG | 1 cut(s) | 1059 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 527 |
| BstF5I | GGATG | 4 cut(s) | 169, 538, 870, 891 |
| BstFNI | CGCG | 2 cut(s) | 104, 644 |
| BstHHI | GCGC | 1 cut(s) | 644 |
| BstKTI | GATC | 6 cut(s) | 146, 169, 188, 224, 247, 544 |
| BstMAI | GTCTC | 1 cut(s) | 66 |
| BstMBI | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 342, 644, 732, 948 |
| BstNI | CCWGG | 1 cut(s) | 17 |
| BstNSI | RCATGY | 2 cut(s) | 97, 969 |
| BstSCI | CCNGG | 4 cut(s) | 15, 468, 596, 1053 |
| BstSFI | CTRYAG | 2 cut(s) | 481, 946 |
| BstSLI | GKGCMC | 1 cut(s) | 470 |
| BstUI | CGCG | 2 cut(s) | 104, 644 |
| BstV1I | GCAGC | 6 cut(s) | 56, 588, 899, 932, 954, 960 |
| BstX2I | RGATCY | 1 cut(s) | 221 |
| BstYI | RGATCY | 1 cut(s) | 221 |
| Bsu15I | ATCGAT | 1 cut(s) | 544 |
| BsuI | GTATCC | 1 cut(s) | 23 |
| BsuRI | GGCC | 1 cut(s) | 107 |
| BsuTUI | ATCGAT | 1 cut(s) | 544 |
| BtgZI | GCGATG | 1 cut(s) | 85 |
| BtrI | CACGTC | 1 cut(s) | 456 |
| BtsCI | GGATG | 4 cut(s) | 169, 538, 870, 891 |
| BtsIMutI | CAGTG | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 1 cut(s) | 640 |
| CaiI | CAGNNNCTG | 2 cut(s) | 835, 945 |
| CfoI | GCGC | 1 cut(s) | 644 |
| ClaI | ATCGAT | 1 cut(s) | 544 |
| Csp6I | GTAC | 6 cut(s) | 318, 486, 508, 616, 668, 874 |
| CviJI | RGCY | 8 cut(s) | 107, 439, 557, 601, 638, 703, 945, 1058 |
| CviKI_1 | RGCY | 8 cut(s) | 107, 439, 557, 601, 638, 703, 945, 1058 |
| CviQI | GTAC | 6 cut(s) | 318, 486, 508, 616, 668, 874 |
| DdeI | CTNAG | 1 cut(s) | 1059 |
| DpnI | GATC | 6 cut(s) | 145, 168, 187, 223, 246, 543 |
| DpnII | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| DraI | TTTAAA | 1 cut(s) | 331 |
| DriI | GACNNNNNGTC | 1 cut(s) | 454 |
| EaeI | YGGCCR | 1 cut(s) | 105 |
| Eam1104I | CTCTTC | 1 cut(s) | 31 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 454 |
| EarI | CTCTTC | 1 cut(s) | 31 |
| Eco130I | CCWWGG | 4 cut(s) | 115, 137, 179, 215 |
| Eco31I | GGTCTC | 1 cut(s) | 66 |
| Eco57I | CTGAAG | 2 cut(s) | 684, 857 |
| Eco88I | CYCGRG | 1 cut(s) | 503 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 527 |
| EcoRI | GAATTC | 1 cut(s) | 809 |
| EcoRII | CCWGG | 1 cut(s) | 15 |
| EcoT14I | CCWWGG | 4 cut(s) | 115, 137, 179, 215 |
| EcoT22I | ATGCAT | 1 cut(s) | 416 |
| ErhI | CCWWGG | 4 cut(s) | 115, 137, 179, 215 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 208, 240 |
| FaqI | GGGAC | 2 cut(s) | 390, 612 |
| FauI | CCCGC | 1 cut(s) | 719 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 8 cut(s) | 45, 105, 602, 645, 913, 943, 946, 949 |
| FokI | GGATG | 4 cut(s) | 176, 545, 877, 898 |
| Fsp4HI | GCNGC | 8 cut(s) | 45, 105, 602, 645, 913, 943, 946, 949 |
| FspBI | CTAG | 4 cut(s) | 282, 306, 315, 759 |
| GlaI | GCGC | 1 cut(s) | 643 |
| GluI | GCNGC | 8 cut(s) | 45, 105, 602, 645, 913, 943, 946, 949 |
| GsuI | CTGGAG | 1 cut(s) | 510 |
| HaeIII | GGCC | 1 cut(s) | 107 |
| HapII | CCGG | 4 cut(s) | 470, 514, 597, 1055 |
| HhaI | GCGC | 1 cut(s) | 644 |
| Hin6I | GCGC | 1 cut(s) | 642 |
| HinP1I | GCGC | 1 cut(s) | 642 |
| HinfI | GANTC | 2 cut(s) | 64, 519 |
| HpaII | CCGG | 4 cut(s) | 470, 514, 597, 1055 |
| HphI | GGTGA | 4 cut(s) | 19, 40, 866, 880 |
| Hpy166II | GTNNAC | 2 cut(s) | 287, 1043 |
| Hpy188I | TCNGA | 7 cut(s) | 171, 249, 565, 610, 723, 808, 831 |
| Hpy188III | TCNNGA | 3 cut(s) | 526, 714, 739 |
| Hpy8I | GTNNAC | 2 cut(s) | 287, 1043 |
| HpyAV | CCTTC | 9 cut(s) | 19, 331, 523, 640, 688, 693, 720, 832, 854 |
| HpyCH4III | ACNGT | 3 cut(s) | 7, 125, 626 |
| HpyCH4IV | ACGT | 2 cut(s) | 455, 960 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 342, 644, 732, 948 |
| HpyF3I | CTNAG | 1 cut(s) | 1059 |
| HpySE526I | ACGT | 2 cut(s) | 455, 960 |
| HspAI | GCGC | 1 cut(s) | 642 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| LmnI | GCTCC | 2 cut(s) | 444, 723 |
| Lsp1109I | GCAGC | 6 cut(s) | 56, 588, 899, 932, 954, 960 |
| LweI | GCATC | 3 cut(s) | 253, 744, 960 |
| MaeI | CTAG | 4 cut(s) | 282, 306, 315, 759 |
| MaeII | ACGT | 2 cut(s) | 455, 960 |
| MaeIII | GTNAC | 4 cut(s) | 535, 589, 961, 989 |
| MalI | GATC | 6 cut(s) | 145, 168, 187, 223, 246, 543 |
| MbiI | CCGCTC | 1 cut(s) | 726 |
| MboI | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| MboII | GAAGA | 6 cut(s) | 48, 73, 216, 362, 703, 869 |
| MfeI | CAATTG | 1 cut(s) | 814 |
| MflI | RGATCY | 1 cut(s) | 221 |
| MhlI | GDGCHC | 1 cut(s) | 470 |
| MluCI | AATT | 3 cut(s) | 422, 809, 814 |
| MmeI | TCCRAC | 1 cut(s) | 216 |
| MnlI | CCTC | 6 cut(s) | 199, 235, 369, 512, 533, 928 |
| Mph1103I | ATGCAT | 1 cut(s) | 416 |
| MseI | TTAA | 3 cut(s) | 84, 330, 582 |
| MslI | CAYNNNNRTG | 3 cut(s) | 261, 970, 1023 |
| MspA1I | CMGCKG | 1 cut(s) | 945 |
| MspI | CCGG | 4 cut(s) | 470, 514, 597, 1055 |
| MspR9I | CCNGG | 4 cut(s) | 17, 470, 598, 1055 |
| MunI | CAATTG | 1 cut(s) | 814 |
| Mva1269I | GAATGC | 1 cut(s) | 371 |
| MvaI | CCWGG | 1 cut(s) | 17 |
| MvnI | CGCG | 2 cut(s) | 104, 644 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 342, 644, 732, 948 |
| NciI | CCSGG | 3 cut(s) | 470, 598, 1055 |
| NdeII | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| NlaIV | GGNNCC | 1 cut(s) | 795 |
| NmuCI | GTSAC | 2 cut(s) | 589, 961 |
| NsiI | ATGCAT | 1 cut(s) | 416 |
| NspI | RCATGY | 2 cut(s) | 97, 969 |
| PaeR7I | CTCGAG | 1 cut(s) | 503 |
| PctI | GAATGC | 1 cut(s) | 371 |
| PfeI | GAWTC | 2 cut(s) | 64, 519 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 202 |
| PfoI | TCCNGGA | 1 cut(s) | 15 |
| PkrI | GCNGC | 8 cut(s) | 46, 106, 603, 646, 914, 944, 947, 950 |
| Psp6I | CCWGG | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 15 |
| PspN4I | GGNNCC | 1 cut(s) | 795 |
| PspXI | VCTCGAGB | 1 cut(s) | 503 |
| PstI | CTGCAG | 2 cut(s) | 485, 950 |
| PstNI | CAGNNNCTG | 2 cut(s) | 835, 945 |
| PsuI | RGATCY | 1 cut(s) | 221 |
| PvuII | CAGCTG | 1 cut(s) | 945 |
| RsaI | GTAC | 6 cut(s) | 319, 487, 509, 617, 669, 875 |
| RsaNI | GTAC | 6 cut(s) | 318, 486, 508, 616, 668, 874 |
| RseI | CAYNNNNRTG | 3 cut(s) | 261, 970, 1023 |
| SaqAI | TTAA | 3 cut(s) | 84, 330, 582 |
| SatI | GCNGC | 8 cut(s) | 45, 105, 602, 645, 913, 943, 946, 949 |
| Sau3AI | GATC | 6 cut(s) | 143, 166, 185, 221, 244, 541 |
| ScaI | AGTACT | 3 cut(s) | 487, 509, 617 |
| ScrFI | CCNGG | 4 cut(s) | 17, 470, 598, 1055 |
| SduI | GDGCHC | 1 cut(s) | 470 |
| SfaNI | GCATC | 3 cut(s) | 253, 744, 960 |
| SfcI | CTRYAG | 2 cut(s) | 481, 946 |
| Sfr274I | CTCGAG | 1 cut(s) | 503 |
| SlaI | CTCGAG | 1 cut(s) | 503 |
| SmiI | ATTTAAAT | 1 cut(s) | 331 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 261, 970, 1023 |
| SmlI | CTYRAG | 1 cut(s) | 503 |
| SmoI | CTYRAG | 1 cut(s) | 503 |
| SpeI | ACTAGT | 3 cut(s) | 281, 305, 314 |
| Sse9I | AATT | 3 cut(s) | 422, 809, 814 |
| SsiI | CCGC | 5 cut(s) | 104, 644, 726, 852, 901 |
| SspMI | CTAG | 4 cut(s) | 282, 306, 315, 759 |
| StyD4I | CCNGG | 4 cut(s) | 15, 468, 596, 1053 |
| StyI | CCWWGG | 4 cut(s) | 115, 137, 179, 215 |
| SwaI | ATTTAAAT | 1 cut(s) | 331 |
| TaaI | ACNGT | 3 cut(s) | 7, 125, 626 |
| TaiI | ACGT | 2 cut(s) | 458, 963 |
| TaqI | TCGA | 3 cut(s) | 504, 544, 738 |
| TasI | AATT | 3 cut(s) | 422, 809, 814 |
| TatI | WGTACW | 3 cut(s) | 485, 507, 615 |
| TauI | GCSGC | 2 cut(s) | 107, 647 |
| TfiI | GAWTC | 2 cut(s) | 64, 519 |
| Tru1I | TTAA | 3 cut(s) | 84, 330, 582 |
| Tru9I | TTAA | 3 cut(s) | 84, 330, 582 |
| TscAI | CASTG | 1 cut(s) | 294 |
| TseFI | GTSAC | 2 cut(s) | 589, 961 |
| TseI | GCWGC | 6 cut(s) | 44, 601, 912, 942, 945, 948 |
| Tsp45I | GTSAC | 2 cut(s) | 589, 961 |
| TspDTI | ATGAA | 5 cut(s) | 74, 313, 363, 704, 902 |
| TspRI | CASTG | 1 cut(s) | 294 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 202 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 527 |
| XapI | RAATTY | 2 cut(s) | 422, 809 |
| XceI | RCATGY | 2 cut(s) | 97, 969 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 157, 199, 235 |
| XhoI | CTCGAG | 1 cut(s) | 503 |
| XspI | CTAG | 4 cut(s) | 282, 306, 315, 759 |
| ZrmI | AGTACT | 3 cut(s) | 487, 509, 617 |
| Zsp2I | ATGCAT | 1 cut(s) | 416 |