zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 83 - 205 | 7.3e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 496 |
| AciI | CCGC | 3 cut(s) | 229, 285, 329 |
| AclWI | GGATC | 1 cut(s) | 466 |
| AcsI | RAATTY | 2 cut(s) | 377, 493 |
| AfaI | GTAC | 2 cut(s) | 210, 488 |
| AfeI | AGCGCT | 1 cut(s) | 387 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 230, 481, 496 |
| AflII | CTTAAG | 1 cut(s) | 23 |
| AgsI | TTSAA | 1 cut(s) | 41 |
| AjnI | CCWGG | 1 cut(s) | 547 |
| AluBI | AGCT | 4 cut(s) | 191, 395, 614, 681 |
| AluI | AGCT | 4 cut(s) | 191, 395, 614, 681 |
| Alw21I | GWGCWC | 1 cut(s) | 303 |
| Alw26I | GTCTC | 2 cut(s) | 102, 559 |
| AlwI | GGATC | 1 cut(s) | 466 |
| Aor51HI | AGCGCT | 1 cut(s) | 387 |
| AoxI | GGCC | 3 cut(s) | 286, 330, 545 |
| ApeKI | GCWGC | 1 cut(s) | 132 |
| ApoI | RAATTY | 2 cut(s) | 377, 493 |
| AspA2I | CCTAGG | 1 cut(s) | 289 |
| AspLEI | GCGC | 1 cut(s) | 388 |
| AsuC2I | CCSGG | 1 cut(s) | 305 |
| AsuHPI | GGTGA | 1 cut(s) | 332 |
| AsuII | TTCGAA | 2 cut(s) | 467, 526 |
| AvrII | CCTAGG | 1 cut(s) | 289 |
| Bbv12I | GWGCWC | 1 cut(s) | 303 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 3 cut(s) | 207, 248, 472 |
| BciT130I | CCWGG | 1 cut(s) | 549 |
| BclI | TGATCA | 2 cut(s) | 628, 706 |
| BcnI | CCSGG | 1 cut(s) | 305 |
| BcoDI | GTCTC | 2 cut(s) | 102, 559 |
| BfaI | CTAG | 4 cut(s) | 290, 383, 396, 573 |
| BfoI | RGCGCY | 1 cut(s) | 389 |
| BfrI | CTTAAG | 1 cut(s) | 23 |
| BisI | GCNGC | 3 cut(s) | 133, 286, 330 |
| BlnI | CCTAGG | 1 cut(s) | 289 |
| BlsI | GCNGC | 3 cut(s) | 134, 287, 331 |
| Bme1390I | CCNGG | 2 cut(s) | 305, 549 |
| BmrFI | CCNGG | 2 cut(s) | 305, 549 |
| BpmI | CTGGAG | 3 cut(s) | 177, 557, 570 |
| Bpu14I | TTCGAA | 2 cut(s) | 467, 526 |
| BpuEI | CTTGAG | 1 cut(s) | 26 |
| BpuMI | CCSGG | 1 cut(s) | 305 |
| BsaI | GGTCTC | 1 cut(s) | 102 |
| BsaJI | CCNNGG | 1 cut(s) | 289 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 230, 481, 496 |
| Bse1I | ACTGG | 1 cut(s) | 194 |
| BseBI | CCWGG | 1 cut(s) | 549 |
| BseDI | CCNNGG | 1 cut(s) | 289 |
| BseGI | GGATG | 2 cut(s) | 259, 313 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 230, 481, 496 |
| BseMII | CTCAG | 2 cut(s) | 21, 122 |
| BseNI | ACTGG | 1 cut(s) | 194 |
| BseRI | GAGGAG | 2 cut(s) | 47, 497 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| BsgI | GTGCAG | 2 cut(s) | 99, 151 |
| BshFI | GGCC | 3 cut(s) | 288, 332, 547 |
| BsiHKAI | GWGCWC | 1 cut(s) | 303 |
| BsiSI | CCGG | 1 cut(s) | 304 |
| BslFI | GGGAC | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 230, 481, 496 |
| BsmAI | GTCTC | 2 cut(s) | 102, 559 |
| BsmFI | GGGAC | 1 cut(s) | 246 |
| BsnI | GGCC | 3 cut(s) | 288, 332, 547 |
| Bso31I | GGTCTC | 1 cut(s) | 102 |
| Bsp119I | TTCGAA | 2 cut(s) | 467, 526 |
| Bsp1286I | GDGCHC | 1 cut(s) | 303 |
| Bsp143I | GATC | 3 cut(s) | 471, 628, 706 |
| BspACI | CCGC | 3 cut(s) | 229, 285, 329 |
| BspANI | GGCC | 3 cut(s) | 288, 332, 547 |
| BspCNI | CTCAG | 2 cut(s) | 22, 121 |
| BspPI | GGATC | 1 cut(s) | 466 |
| BspT104I | TTCGAA | 2 cut(s) | 467, 526 |
| BspTI | CTTAAG | 1 cut(s) | 23 |
| BspTNI | GGTCTC | 1 cut(s) | 102 |
| BsrI | ACTGG | 1 cut(s) | 194 |
| BssECI | CCNNGG | 1 cut(s) | 289 |
| BssMI | GATC | 3 cut(s) | 471, 628, 706 |
| BssT1I | CCWWGG | 1 cut(s) | 289 |
| Bst2UI | CCWGG | 1 cut(s) | 549 |
| Bst4CI | ACNGT | 4 cut(s) | 173, 323, 434, 452 |
| BstAFI | CTTAAG | 1 cut(s) | 23 |
| BstBI | TTCGAA | 2 cut(s) | 467, 526 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 165 |
| BstDEI | CTNAG | 4 cut(s) | 30, 108, 665, 677 |
| BstEII | GGTNACC | 1 cut(s) | 506 |
| BstF5I | GGATG | 2 cut(s) | 259, 313 |
| BstH2I | RGCGCY | 1 cut(s) | 389 |
| BstHHI | GCGC | 1 cut(s) | 388 |
| BstKTI | GATC | 3 cut(s) | 474, 631, 709 |
| BstMAI | GTCTC | 2 cut(s) | 102, 559 |
| BstMBI | GATC | 3 cut(s) | 471, 628, 706 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 335, 392, 611 |
| BstNI | CCWGG | 1 cut(s) | 549 |
| BstPI | GGTNACC | 1 cut(s) | 506 |
| BstSCI | CCNGG | 2 cut(s) | 303, 547 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| BstX2I | RGATCY | 1 cut(s) | 471 |
| BstYI | RGATCY | 1 cut(s) | 471 |
| BsuRI | GGCC | 3 cut(s) | 288, 332, 547 |
| BtsCI | GGATG | 2 cut(s) | 259, 313 |
| BtsI | GCAGTG | 1 cut(s) | 594 |
| BtsIMutI | CAGTG | 2 cut(s) | 169, 594 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 165 |
| CfoI | GCGC | 1 cut(s) | 388 |
| Csp6I | GTAC | 2 cut(s) | 209, 487 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 570, 605 |
| CviAII | CATG | 4 cut(s) | 119, 144, 344, 503 |
| CviQI | GTAC | 2 cut(s) | 209, 487 |
| DdeI | CTNAG | 4 cut(s) | 30, 108, 665, 677 |
| DpnI | GATC | 3 cut(s) | 473, 630, 708 |
| DpnII | GATC | 3 cut(s) | 471, 628, 706 |
| Eco130I | CCWWGG | 1 cut(s) | 289 |
| Eco147I | AGGCCT | 1 cut(s) | 547 |
| Eco31I | GGTCTC | 1 cut(s) | 102 |
| Eco47III | AGCGCT | 1 cut(s) | 387 |
| Eco91I | GGTNACC | 1 cut(s) | 506 |
| EcoO65I | GGTNACC | 1 cut(s) | 506 |
| EcoRII | CCWGG | 1 cut(s) | 547 |
| EcoT14I | CCWWGG | 1 cut(s) | 289 |
| ErhI | CCWWGG | 1 cut(s) | 289 |
| FaeI | CATG | 4 cut(s) | 122, 147, 347, 506 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 598, 630 |
| FaqI | GGGAC | 1 cut(s) | 246 |
| FatI | CATG | 4 cut(s) | 118, 143, 343, 502 |
| FauI | CCCGC | 1 cut(s) | 222 |
| FbaI | TGATCA | 2 cut(s) | 628, 706 |
| Fnu4HI | GCNGC | 3 cut(s) | 133, 286, 330 |
| FokI | GGATG | 2 cut(s) | 266, 320 |
| Fsp4HI | GCNGC | 3 cut(s) | 133, 286, 330 |
| FspBI | CTAG | 4 cut(s) | 290, 383, 396, 573 |
| GlaI | GCGC | 1 cut(s) | 387 |
| GluI | GCNGC | 3 cut(s) | 133, 286, 330 |
| GsuI | CTGGAG | 3 cut(s) | 177, 557, 570 |
| HaeII | RGCGCY | 1 cut(s) | 389 |
| HaeIII | GGCC | 3 cut(s) | 288, 332, 547 |
| HapII | CCGG | 1 cut(s) | 304 |
| HhaI | GCGC | 1 cut(s) | 388 |
| Hin1II | CATG | 4 cut(s) | 122, 147, 347, 506 |
| Hin6I | GCGC | 1 cut(s) | 386 |
| HinP1I | GCGC | 1 cut(s) | 386 |
| HindIII | AAGCTT | 2 cut(s) | 612, 679 |
| HinfI | GANTC | 2 cut(s) | 552, 620 |
| HpaII | CCGG | 1 cut(s) | 304 |
| HphI | GGTGA | 1 cut(s) | 332 |
| Hpy166II | GTNNAC | 2 cut(s) | 176, 401 |
| Hpy188I | TCNGA | 3 cut(s) | 111, 201, 625 |
| Hpy188III | TCNNGA | 3 cut(s) | 70, 475, 656 |
| Hpy8I | GTNNAC | 2 cut(s) | 176, 401 |
| HpyAV | CCTTC | 2 cut(s) | 275, 308 |
| HpyCH4III | ACNGT | 4 cut(s) | 173, 323, 434, 452 |
| HpyCH4V | TGCA | 4 cut(s) | 116, 132, 587, 605 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 335, 392, 611 |
| HpyF3I | CTNAG | 4 cut(s) | 30, 108, 665, 677 |
| Hsp92II | CATG | 4 cut(s) | 122, 147, 347, 506 |
| HspAI | GCGC | 1 cut(s) | 386 |
| Ksp22I | TGATCA | 2 cut(s) | 628, 706 |
| Kzo9I | GATC | 3 cut(s) | 471, 628, 706 |
| LmnI | GCTCC | 2 cut(s) | 196, 306 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| MaeI | CTAG | 4 cut(s) | 290, 383, 396, 573 |
| MaeIII | GTNAC | 2 cut(s) | 506, 689 |
| MalI | GATC | 3 cut(s) | 473, 630, 708 |
| MboI | GATC | 3 cut(s) | 471, 628, 706 |
| MboII | GAAGA | 2 cut(s) | 196, 481 |
| MfeI | CAATTG | 2 cut(s) | 404, 637 |
| MflI | RGATCY | 1 cut(s) | 471 |
| MhlI | GDGCHC | 1 cut(s) | 303 |
| MluCI | AATT | 5 cut(s) | 377, 404, 493, 513, 637 |
| MlyI | GAGTC | 1 cut(s) | 561 |
| MnlI | CCTC | 3 cut(s) | 25, 231, 475 |
| MseI | TTAA | 2 cut(s) | 24, 239 |
| MspA1I | CMGCKG | 1 cut(s) | 229 |
| MspCI | CTTAAG | 1 cut(s) | 23 |
| MspI | CCGG | 1 cut(s) | 304 |
| MspR9I | CCNGG | 2 cut(s) | 305, 549 |
| MunI | CAATTG | 2 cut(s) | 404, 637 |
| MvaI | CCWGG | 1 cut(s) | 549 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 335, 392, 611 |
| NciI | CCSGG | 1 cut(s) | 305 |
| NdeII | GATC | 3 cut(s) | 471, 628, 706 |
| NlaIII | CATG | 4 cut(s) | 122, 147, 347, 506 |
| NspV | TTCGAA | 2 cut(s) | 467, 526 |
| PceI | AGGCCT | 1 cut(s) | 547 |
| PfeI | GAWTC | 1 cut(s) | 620 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 496 |
| PfoI | TCCNGGA | 1 cut(s) | 303 |
| PkrI | GCNGC | 3 cut(s) | 134, 287, 331 |
| PleI | GAGTC | 1 cut(s) | 560 |
| PpsI | GAGTC | 1 cut(s) | 560 |
| Psp6I | CCWGG | 1 cut(s) | 547 |
| PspEI | GGTNACC | 1 cut(s) | 506 |
| PspGI | CCWGG | 1 cut(s) | 547 |
| PsuI | RGATCY | 1 cut(s) | 471 |
| RsaI | GTAC | 2 cut(s) | 210, 488 |
| RsaNI | GTAC | 2 cut(s) | 209, 487 |
| SaqAI | TTAA | 2 cut(s) | 24, 239 |
| SatI | GCNGC | 3 cut(s) | 133, 286, 330 |
| Sau3AI | GATC | 3 cut(s) | 471, 628, 706 |
| SchI | GAGTC | 1 cut(s) | 561 |
| ScrFI | CCNGG | 2 cut(s) | 305, 549 |
| SduI | GDGCHC | 1 cut(s) | 303 |
| SetI | ASST | 6 cut(s) | 193, 278, 397, 513, 616, 683 |
| SfuI | TTCGAA | 2 cut(s) | 467, 526 |
| SmlI | CTYRAG | 2 cut(s) | 5, 23 |
| SmoI | CTYRAG | 2 cut(s) | 5, 23 |
| Sse9I | AATT | 5 cut(s) | 377, 404, 493, 513, 637 |
| SseBI | AGGCCT | 1 cut(s) | 547 |
| SsiI | CCGC | 3 cut(s) | 229, 285, 329 |
| SspMI | CTAG | 4 cut(s) | 290, 383, 396, 573 |
| StuI | AGGCCT | 1 cut(s) | 547 |
| StyD4I | CCNGG | 2 cut(s) | 303, 547 |
| StyI | CCWWGG | 1 cut(s) | 289 |
| TaaI | ACNGT | 4 cut(s) | 173, 323, 434, 452 |
| TaqI | TCGA | 3 cut(s) | 467, 526, 598 |
| TasI | AATT | 5 cut(s) | 377, 404, 493, 513, 637 |
| TauI | GCSGC | 2 cut(s) | 288, 332 |
| TfiI | GAWTC | 1 cut(s) | 620 |
| Tru1I | TTAA | 2 cut(s) | 24, 239 |
| Tru9I | TTAA | 2 cut(s) | 24, 239 |
| TscAI | CASTG | 2 cut(s) | 176, 594 |
| TseI | GCWGC | 1 cut(s) | 132 |
| TspDTI | ATGAA | 4 cut(s) | 197, 294, 327, 343 |
| TspRI | CASTG | 2 cut(s) | 176, 594 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 496 |
| Vha464I | CTTAAG | 1 cut(s) | 23 |
| XapI | RAATTY | 2 cut(s) | 377, 493 |
| XmaJI | CCTAGG | 1 cut(s) | 289 |
| XspI | CTAG | 4 cut(s) | 290, 383, 396, 573 |