Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 158 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 396 |
| Acc36I | ACCTGC | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AccI | GTMKAC | 1 cut(s) | 388 |
| AciI | CCGC | 1 cut(s) | 101 |
| AclWI | GGATC | 3 cut(s) | 220, 233, 509 |
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AcsI | RAATTY | 2 cut(s) | 366, 487 |
| AfaI | GTAC | 2 cut(s) | 74, 174 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 679 |
| AflIII | ACRYGT | 1 cut(s) | 691 |
| AgsI | TTSAA | 2 cut(s) | 507, 781 |
| AjiI | CACGTC | 1 cut(s) | 392 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 311, 343 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 141, 173 |
| AluBI | AGCT | 3 cut(s) | 87, 292, 420 |
| AluI | AGCT | 3 cut(s) | 87, 292, 420 |
| Alw21I | GWGCWC | 1 cut(s) | 805 |
| AlwI | GGATC | 3 cut(s) | 220, 233, 509 |
| Ama87I | CYCGRG | 1 cut(s) | 309 |
| AoxI | GGCC | 2 cut(s) | 66, 261 |
| ApeKI | GCWGC | 1 cut(s) | 751 |
| ApoI | RAATTY | 2 cut(s) | 366, 487 |
| AseI | ATTAAT | 1 cut(s) | 26 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 434 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 3 cut(s) | 314, 524, 662 |
| AvaI | CYCGRG | 1 cut(s) | 309 |
| BamHI | GGATCC | 1 cut(s) | 225 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| BbsI | GAAGAC | 1 cut(s) | 157 |
| Bbv12I | GWGCWC | 1 cut(s) | 805 |
| BbvI | GCAGC | 1 cut(s) | 763 |
| BccI | CCATC | 1 cut(s) | 293 |
| BfaI | CTAG | 4 cut(s) | 468, 768, 794, 806 |
| BfmI | CTRYAG | 1 cut(s) | 749 |
| BfuAI | ACCTGC | 1 cut(s) | 158 |
| BisI | GCNGC | 1 cut(s) | 752 |
| BlsI | GCNGC | 1 cut(s) | 753 |
| BmcAI | AGTACT | 1 cut(s) | 74 |
| BmeT110I | CYCGRG | 1 cut(s) | 309 |
| BmgBI | CACGTC | 1 cut(s) | 392 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 227, 558 |
| BmrI | ACTGGG | 1 cut(s) | 64 |
| BmsI | GCATC | 3 cut(s) | 88, 384, 780 |
| BmuI | ACTGGG | 1 cut(s) | 64 |
| BpiI | GAAGAC | 1 cut(s) | 157 |
| BpmI | CTGGAG | 1 cut(s) | 663 |
| BpuEI | CTTGAG | 2 cut(s) | 39, 717 |
| BsaJI | CCNNGG | 1 cut(s) | 552 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 205, 235 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 679 |
| Bse118I | RCCGGY | 1 cut(s) | 259 |
| Bse1I | ACTGG | 5 cut(s) | 70, 151, 514, 646, 822 |
| Bse3DI | GCAATG | 3 cut(s) | 48, 196, 339 |
| BseDI | CCNNGG | 1 cut(s) | 552 |
| BseGI | GGATG | 4 cut(s) | 103, 375, 688, 795 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 679 |
| BseMI | GCAATG | 3 cut(s) | 48, 196, 339 |
| BseMII | CTCAG | 1 cut(s) | 212 |
| BseNI | ACTGG | 5 cut(s) | 70, 151, 514, 646, 822 |
| BseRI | GAGGAG | 1 cut(s) | 302 |
| BseXI | GCAGC | 1 cut(s) | 763 |
| BshFI | GGCC | 2 cut(s) | 68, 263 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BsiHKAI | GWGCWC | 1 cut(s) | 805 |
| BsiHKCI | CYCGRG | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 260 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 679 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| BsnI | GGCC | 2 cut(s) | 68, 263 |
| BsoBI | CYCGRG | 1 cut(s) | 309 |
| Bsp1286I | GDGCHC | 1 cut(s) | 805 |
| Bsp1407I | TGTACA | 1 cut(s) | 172 |
| Bsp143I | GATC | 3 cut(s) | 217, 225, 514 |
| BspACI | CCGC | 1 cut(s) | 101 |
| BspANI | GGCC | 2 cut(s) | 68, 263 |
| BspCNI | CTCAG | 1 cut(s) | 211 |
| BspLI | GGNNCC | 2 cut(s) | 227, 558 |
| BspMAI | CTGCAG | 1 cut(s) | 753 |
| BspMI | ACCTGC | 1 cut(s) | 158 |
| BspPI | GGATC | 3 cut(s) | 220, 233, 509 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 3 cut(s) | 48, 196, 339 |
| BsrFI | RCCGGY | 1 cut(s) | 259 |
| BsrGI | TGTACA | 1 cut(s) | 172 |
| BsrI | ACTGG | 5 cut(s) | 70, 151, 514, 646, 822 |
| BssAI | RCCGGY | 1 cut(s) | 259 |
| BssECI | CCNNGG | 1 cut(s) | 552 |
| BssMI | GATC | 3 cut(s) | 217, 225, 514 |
| BssT1I | CCWWGG | 1 cut(s) | 552 |
| Bst4CI | ACNGT | 1 cut(s) | 531 |
| BstAUI | TGTACA | 1 cut(s) | 172 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 592 |
| BstDEI | CTNAG | 1 cut(s) | 198 |
| BstF5I | GGATG | 4 cut(s) | 103, 375, 688, 795 |
| BstKTI | GATC | 3 cut(s) | 220, 228, 517 |
| BstMBI | GATC | 3 cut(s) | 217, 225, 514 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstNSI | RCATGY | 3 cut(s) | 594, 657, 695 |
| BstSFI | CTRYAG | 1 cut(s) | 749 |
| BstV1I | GCAGC | 1 cut(s) | 763 |
| BstV2I | GAAGAC | 1 cut(s) | 157 |
| BstX2I | RGATCY | 1 cut(s) | 225 |
| BstYI | RGATCY | 1 cut(s) | 225 |
| BsuRI | GGCC | 2 cut(s) | 68, 263 |
| BtrI | CACGTC | 1 cut(s) | 392 |
| BtsCI | GGATG | 4 cut(s) | 103, 375, 688, 795 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| BveI | ACCTGC | 1 cut(s) | 158 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 592 |
| Cfr10I | RCCGGY | 1 cut(s) | 259 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| Csp6I | GTAC | 2 cut(s) | 73, 173 |
| CviAII | CATG | 4 cut(s) | 280, 591, 654, 692 |
| CviJI | RGCY | 8 cut(s) | 68, 87, 263, 292, 338, 420, 455, 551 |
| CviKI_1 | RGCY | 8 cut(s) | 68, 87, 263, 292, 338, 420, 455, 551 |
| CviQI | GTAC | 2 cut(s) | 73, 173 |
| DdeI | CTNAG | 1 cut(s) | 198 |
| DpnI | GATC | 3 cut(s) | 219, 227, 516 |
| DpnII | GATC | 3 cut(s) | 217, 225, 514 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 396 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 396 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| Eco130I | CCWWGG | 1 cut(s) | 552 |
| Eco88I | CYCGRG | 1 cut(s) | 309 |
| EcoT14I | CCWWGG | 1 cut(s) | 552 |
| EcoT22I | ATGCAT | 1 cut(s) | 377 |
| ErhI | CCWWGG | 1 cut(s) | 552 |
| FaeI | CATG | 4 cut(s) | 283, 594, 657, 695 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 422, 454 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FatI | CATG | 4 cut(s) | 279, 590, 653, 691 |
| FauI | CCCGC | 1 cut(s) | 94 |
| FblI | GTMKAC | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 1 cut(s) | 752 |
| FokI | GGATG | 4 cut(s) | 110, 362, 695, 802 |
| Fsp4HI | GCNGC | 1 cut(s) | 752 |
| FspBI | CTAG | 4 cut(s) | 468, 768, 794, 806 |
| GluI | GCNGC | 1 cut(s) | 752 |
| GsuI | CTGGAG | 1 cut(s) | 663 |
| HaeIII | GGCC | 2 cut(s) | 68, 263 |
| HapII | CCGG | 1 cut(s) | 260 |
| Hin1II | CATG | 4 cut(s) | 283, 594, 657, 695 |
| HinfI | GANTC | 3 cut(s) | 113, 319, 771 |
| HpaII | CCGG | 1 cut(s) | 260 |
| HphI | GGTGA | 3 cut(s) | 314, 524, 662 |
| Hpy166II | GTNNAC | 2 cut(s) | 173, 389 |
| Hpy188I | TCNGA | 2 cut(s) | 162, 324 |
| Hpy188III | TCNNGA | 2 cut(s) | 311, 401 |
| Hpy8I | GTNNAC | 2 cut(s) | 173, 389 |
| HpyAV | CCTTC | 2 cut(s) | 129, 424 |
| HpyCH4III | ACNGT | 1 cut(s) | 531 |
| HpyCH4IV | ACGT | 1 cut(s) | 391 |
| HpyCH4V | TGCA | 7 cut(s) | 8, 375, 484, 594, 716, 751, 830 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 1 cut(s) | 198 |
| HpySE526I | ACGT | 1 cut(s) | 391 |
| Hsp92II | CATG | 4 cut(s) | 283, 594, 657, 695 |
| Kzo9I | GATC | 3 cut(s) | 217, 225, 514 |
| LmnI | GCTCC | 2 cut(s) | 289, 417 |
| Lsp1109I | GCAGC | 1 cut(s) | 763 |
| LweI | GCATC | 3 cut(s) | 88, 384, 780 |
| MaeI | CTAG | 4 cut(s) | 468, 768, 794, 806 |
| MaeII | ACGT | 1 cut(s) | 391 |
| MaeIII | GTNAC | 1 cut(s) | 834 |
| MalI | GATC | 3 cut(s) | 219, 227, 516 |
| MboI | GATC | 3 cut(s) | 217, 225, 514 |
| MboII | GAAGA | 3 cut(s) | 162, 193, 489 |
| MfeI | CAATTG | 2 cut(s) | 231, 847 |
| MflI | RGATCY | 1 cut(s) | 225 |
| MhlI | GDGCHC | 1 cut(s) | 805 |
| MluCI | AATT | 8 cut(s) | 231, 248, 294, 366, 381, 487, 580, 847 |
| MmeI | TCCRAC | 1 cut(s) | 203 |
| MnlI | CCTC | 7 cut(s) | 48, 249, 280, 357, 579, 611, 673 |
| Mph1103I | ATGCAT | 1 cut(s) | 377 |
| MroXI | GAANNNNTTC | 1 cut(s) | 434 |
| MseI | TTAA | 4 cut(s) | 26, 626, 744, 813 |
| MspI | CCGG | 1 cut(s) | 260 |
| MunI | CAATTG | 2 cut(s) | 231, 847 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NdeII | GATC | 3 cut(s) | 217, 225, 514 |
| NlaIII | CATG | 4 cut(s) | 283, 594, 657, 695 |
| NlaIV | GGNNCC | 2 cut(s) | 227, 558 |
| NsiI | ATGCAT | 1 cut(s) | 377 |
| NspI | RCATGY | 3 cut(s) | 594, 657, 695 |
| PaeI | GCATGC | 1 cut(s) | 594 |
| PaeR7I | CTCGAG | 1 cut(s) | 309 |
| PaqCI | CACCTGC | 1 cut(s) | 158 |
| PciI | ACATGT | 1 cut(s) | 691 |
| PdmI | GAANNNNTTC | 1 cut(s) | 434 |
| PfeI | GAWTC | 3 cut(s) | 113, 319, 771 |
| PkrI | GCNGC | 1 cut(s) | 753 |
| PscI | ACATGT | 1 cut(s) | 691 |
| PshBI | ATTAAT | 1 cut(s) | 26 |
| PspN4I | GGNNCC | 2 cut(s) | 227, 558 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PstI | CTGCAG | 1 cut(s) | 753 |
| PsuI | RGATCY | 1 cut(s) | 225 |
| RsaI | GTAC | 2 cut(s) | 74, 174 |
| RsaNI | GTAC | 2 cut(s) | 73, 173 |
| SaqAI | TTAA | 4 cut(s) | 26, 626, 744, 813 |
| SatI | GCNGC | 1 cut(s) | 752 |
| Sau3AI | GATC | 3 cut(s) | 217, 225, 514 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| ScaI | AGTACT | 1 cut(s) | 74 |
| SduI | GDGCHC | 1 cut(s) | 805 |
| SfaNI | GCATC | 3 cut(s) | 88, 384, 780 |
| SfcI | CTRYAG | 1 cut(s) | 749 |
| Sfr274I | CTCGAG | 1 cut(s) | 309 |
| SlaI | CTCGAG | 1 cut(s) | 309 |
| SmlI | CTYRAG | 3 cut(s) | 54, 309, 732 |
| SmoI | CTYRAG | 3 cut(s) | 54, 309, 732 |
| SphI | GCATGC | 1 cut(s) | 594 |
| Sse9I | AATT | 8 cut(s) | 231, 248, 294, 366, 381, 487, 580, 847 |
| SsiI | CCGC | 1 cut(s) | 101 |
| SspMI | CTAG | 4 cut(s) | 468, 768, 794, 806 |
| StyI | CCWWGG | 1 cut(s) | 552 |
| TaaI | ACNGT | 1 cut(s) | 531 |
| TaiI | ACGT | 1 cut(s) | 394 |
| TaqI | TCGA | 1 cut(s) | 310 |
| TasI | AATT | 8 cut(s) | 231, 248, 294, 366, 381, 487, 580, 847 |
| TatI | WGTACW | 2 cut(s) | 72, 172 |
| TfiI | GAWTC | 3 cut(s) | 113, 319, 771 |
| Tru1I | TTAA | 4 cut(s) | 26, 626, 744, 813 |
| Tru9I | TTAA | 4 cut(s) | 26, 626, 744, 813 |
| TscAI | CASTG | 1 cut(s) | 151 |
| TseI | GCWGC | 1 cut(s) | 751 |
| TspGWI | ACGGA | 1 cut(s) | 507 |
| TspRI | CASTG | 1 cut(s) | 151 |
| VspI | ATTAAT | 1 cut(s) | 26 |
| XapI | RAATTY | 2 cut(s) | 366, 487 |
| XceI | RCATGY | 3 cut(s) | 594, 657, 695 |
| XhoI | CTCGAG | 1 cut(s) | 309 |
| XmiI | GTMKAC | 1 cut(s) | 388 |
| XmnI | GAANNNNTTC | 1 cut(s) | 434 |
| XspI | CTAG | 4 cut(s) | 468, 768, 794, 806 |
| ZrmI | AGTACT | 1 cut(s) | 74 |
| Zsp2I | ATGCAT | 1 cut(s) | 377 |