Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 57 - 179 | 5.5e-26 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 516 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 382 |
| AciI | CCGC | 1 cut(s) | 25 |
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 152, 153, 292, 382 |
| AflIII | ACRYGT | 1 cut(s) | 45 |
| AgsI | TTSAA | 3 cut(s) | 43, 103, 365 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 83 |
| AluBI | AGCT | 6 cut(s) | 119, 345, 461, 512, 527, 560 |
| AluI | AGCT | 6 cut(s) | 119, 345, 461, 512, 527, 560 |
| Alw26I | GTCTC | 4 cut(s) | 16, 28, 70, 276 |
| Ama87I | CYCGRG | 2 cut(s) | 93, 120 |
| AoxI | GGCC | 3 cut(s) | 96, 131, 208 |
| ApeKI | GCWGC | 3 cut(s) | 116, 308, 512 |
| AspLEI | GCGC | 1 cut(s) | 517 |
| AspS9I | GGNCC | 2 cut(s) | 96, 208 |
| AsuC2I | CCSGG | 2 cut(s) | 94, 95 |
| AsuHPI | GGTGA | 2 cut(s) | 132, 172 |
| AvaI | CYCGRG | 2 cut(s) | 93, 120 |
| BbvI | GCAGC | 3 cut(s) | 128, 295, 499 |
| BccI | CCATC | 1 cut(s) | 170 |
| BceAI | ACGGC | 2 cut(s) | 93, 118 |
| BclI | TGATCA | 1 cut(s) | 187 |
| BcnI | CCSGG | 2 cut(s) | 94, 95 |
| BcoDI | GTCTC | 4 cut(s) | 16, 28, 70, 276 |
| BfaI | CTAG | 5 cut(s) | 129, 173, 312, 546, 582 |
| BisI | GCNGC | 3 cut(s) | 117, 309, 513 |
| BlsI | GCNGC | 3 cut(s) | 118, 310, 514 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 95 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 83 |
| BmeT110I | CYCGRG | 2 cut(s) | 93, 120 |
| BmgT120I | GGNCC | 2 cut(s) | 96, 208 |
| BmiI | GGNNCC | 2 cut(s) | 209, 351 |
| BmrFI | CCNGG | 2 cut(s) | 94, 95 |
| BmsI | GCATC | 2 cut(s) | 403, 594 |
| BpuMI | CCSGG | 2 cut(s) | 94, 95 |
| BsaJI | CCNNGG | 3 cut(s) | 93, 134, 211 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 152, 153, 292, 382 |
| BseDI | CCNNGG | 3 cut(s) | 93, 134, 211 |
| BseGI | GGATG | 3 cut(s) | 13, 260, 418 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 152, 153, 292, 382 |
| BseRI | GAGGAG | 1 cut(s) | 46 |
| BseXI | GCAGC | 3 cut(s) | 128, 295, 499 |
| BshFI | GGCC | 3 cut(s) | 98, 133, 210 |
| BsiHKCI | CYCGRG | 2 cut(s) | 93, 120 |
| BsiSI | CCGG | 1 cut(s) | 94 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 152, 153, 292, 382 |
| BsmAI | GTCTC | 4 cut(s) | 16, 28, 70, 276 |
| BsmBI | CGTCTC | 1 cut(s) | 28 |
| BsnI | GGCC | 3 cut(s) | 98, 133, 210 |
| BsoBI | CYCGRG | 2 cut(s) | 93, 120 |
| Bsp143I | GATC | 1 cut(s) | 187 |
| BspACI | CCGC | 1 cut(s) | 25 |
| BspANI | GGCC | 3 cut(s) | 98, 133, 210 |
| BspLI | GGNNCC | 2 cut(s) | 209, 351 |
| BssECI | CCNNGG | 3 cut(s) | 93, 134, 211 |
| BssMI | GATC | 1 cut(s) | 187 |
| BssT1I | CCWWGG | 1 cut(s) | 211 |
| Bst6I | CTCTTC | 4 cut(s) | 19, 23, 238, 402 |
| BstC8I | GCNNGC | 1 cut(s) | 306 |
| BstDEI | CTNAG | 2 cut(s) | 528, 556 |
| BstDSI | CCRYGG | 1 cut(s) | 134 |
| BstEII | GGTNACC | 1 cut(s) | 138 |
| BstF5I | GGATG | 3 cut(s) | 13, 260, 418 |
| BstHHI | GCGC | 1 cut(s) | 517 |
| BstKTI | GATC | 1 cut(s) | 190 |
| BstMAI | GTCTC | 4 cut(s) | 16, 28, 70, 276 |
| BstMBI | GATC | 1 cut(s) | 187 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 317, 533 |
| BstNSI | RCATGY | 1 cut(s) | 49 |
| BstPI | GGTNACC | 1 cut(s) | 138 |
| BstSCI | CCNGG | 2 cut(s) | 92, 93 |
| BstV1I | GCAGC | 3 cut(s) | 128, 295, 499 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 156 |
| BsuRI | GGCC | 3 cut(s) | 98, 133, 210 |
| BtgI | CCRYGG | 1 cut(s) | 134 |
| BtsCI | GGATG | 3 cut(s) | 13, 260, 418 |
| Cac8I | GCNNGC | 1 cut(s) | 306 |
| CfoI | GCGC | 1 cut(s) | 517 |
| Cfr13I | GGNCC | 2 cut(s) | 96, 208 |
| Cfr9I | CCCGGG | 1 cut(s) | 93 |
| CviAII | CATG | 4 cut(s) | 46, 275, 397, 488 |
| DdeI | CTNAG | 2 cut(s) | 528, 556 |
| DpnI | GATC | 1 cut(s) | 189 |
| DpnII | GATC | 1 cut(s) | 187 |
| DriI | GACNNNNNGTC | 1 cut(s) | 83 |
| Eam1104I | CTCTTC | 4 cut(s) | 19, 23, 238, 402 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 83 |
| EarI | CTCTTC | 4 cut(s) | 19, 23, 238, 402 |
| Eco130I | CCWWGG | 1 cut(s) | 211 |
| Eco32I | GATATC | 1 cut(s) | 394 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| Eco88I | CYCGRG | 2 cut(s) | 93, 120 |
| Eco91I | GGTNACC | 1 cut(s) | 138 |
| EcoO109I | RGGNCCY | 1 cut(s) | 208 |
| EcoO65I | GGTNACC | 1 cut(s) | 138 |
| EcoRV | GATATC | 1 cut(s) | 394 |
| EcoT14I | CCWWGG | 1 cut(s) | 211 |
| ErhI | CCWWGG | 1 cut(s) | 211 |
| Esp3I | CGTCTC | 1 cut(s) | 28 |
| FaeI | CATG | 4 cut(s) | 49, 278, 400, 491 |
| FatI | CATG | 4 cut(s) | 45, 274, 396, 487 |
| FauNDI | CATATG | 1 cut(s) | 519 |
| FbaI | TGATCA | 1 cut(s) | 187 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 309, 513 |
| FokI | GGATG | 3 cut(s) | 20, 267, 425 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 309, 513 |
| FspBI | CTAG | 5 cut(s) | 129, 173, 312, 546, 582 |
| FspI | TGCGCA | 1 cut(s) | 516 |
| GlaI | GCGC | 1 cut(s) | 516 |
| GluI | GCNGC | 3 cut(s) | 117, 309, 513 |
| HaeIII | GGCC | 3 cut(s) | 98, 133, 210 |
| HapII | CCGG | 1 cut(s) | 94 |
| HhaI | GCGC | 1 cut(s) | 517 |
| Hin1II | CATG | 4 cut(s) | 49, 278, 400, 491 |
| Hin6I | GCGC | 1 cut(s) | 515 |
| HinP1I | GCGC | 1 cut(s) | 515 |
| HindIII | AAGCTT | 1 cut(s) | 459 |
| HinfI | GANTC | 6 cut(s) | 78, 230, 299, 337, 500, 574 |
| HpaII | CCGG | 1 cut(s) | 94 |
| HphI | GGTGA | 2 cut(s) | 132, 172 |
| Hpy188I | TCNGA | 2 cut(s) | 403, 573 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 227 |
| HpyAV | CCTTC | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 1 cut(s) | 261 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 317, 533 |
| HpyF3I | CTNAG | 2 cut(s) | 528, 556 |
| Hsp92II | CATG | 4 cut(s) | 49, 278, 400, 491 |
| HspAI | GCGC | 1 cut(s) | 515 |
| Ksp22I | TGATCA | 1 cut(s) | 187 |
| Kzo9I | GATC | 1 cut(s) | 187 |
| LmnI | GCTCC | 1 cut(s) | 355 |
| LpnPI | CCDG | 5 cut(s) | 107, 222, 247, 300, 405 |
| Lsp1109I | GCAGC | 3 cut(s) | 128, 295, 499 |
| LweI | GCATC | 2 cut(s) | 403, 594 |
| MaeI | CTAG | 5 cut(s) | 129, 173, 312, 546, 582 |
| MaeIII | GTNAC | 3 cut(s) | 138, 227, 277 |
| MalI | GATC | 1 cut(s) | 189 |
| MboI | GATC | 1 cut(s) | 187 |
| MboII | GAAGA | 5 cut(s) | 6, 40, 225, 419, 452 |
| MfeI | CAATTG | 1 cut(s) | 150 |
| MluCI | AATT | 9 cut(s) | 150, 199, 222, 243, 354, 380, 505, 541, 616 |
| MlyI | GAGTC | 4 cut(s) | 72, 224, 346, 509 |
| MnlI | CCTC | 8 cut(s) | 24, 118, 153, 245, 403, 423, 558, 589 |
| MseI | TTAA | 3 cut(s) | 242, 387, 540 |
| MspA1I | CMGCKG | 1 cut(s) | 512 |
| MspI | CCGG | 1 cut(s) | 94 |
| MspR9I | CCNGG | 2 cut(s) | 94, 95 |
| MunI | CAATTG | 1 cut(s) | 150 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 317, 533 |
| NciI | CCSGG | 2 cut(s) | 94, 95 |
| NdeI | CATATG | 1 cut(s) | 519 |
| NdeII | GATC | 1 cut(s) | 187 |
| NlaIII | CATG | 4 cut(s) | 49, 278, 400, 491 |
| NlaIV | GGNNCC | 2 cut(s) | 209, 351 |
| NmuCI | GTSAC | 3 cut(s) | 138, 227, 277 |
| NsbI | TGCGCA | 1 cut(s) | 516 |
| NspI | RCATGY | 1 cut(s) | 49 |
| PaeR7I | CTCGAG | 1 cut(s) | 120 |
| PciI | ACATGT | 1 cut(s) | 45 |
| PfeI | GAWTC | 2 cut(s) | 299, 574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 382 |
| PkrI | GCNGC | 3 cut(s) | 118, 310, 514 |
| PleI | GAGTC | 4 cut(s) | 72, 224, 345, 508 |
| PpsI | GAGTC | 4 cut(s) | 72, 224, 345, 508 |
| PscI | ACATGT | 1 cut(s) | 45 |
| PspEI | GGTNACC | 1 cut(s) | 138 |
| PspN4I | GGNNCC | 2 cut(s) | 209, 351 |
| PspPI | GGNCC | 2 cut(s) | 96, 208 |
| PvuII | CAGCTG | 1 cut(s) | 512 |
| SaqAI | TTAA | 3 cut(s) | 242, 387, 540 |
| SatI | GCNGC | 3 cut(s) | 117, 309, 513 |
| Sau3AI | GATC | 1 cut(s) | 187 |
| Sau96I | GGNCC | 2 cut(s) | 96, 208 |
| SchI | GAGTC | 4 cut(s) | 72, 224, 346, 509 |
| ScrFI | CCNGG | 2 cut(s) | 94, 95 |
| SetI | ASST | 9 cut(s) | 121, 145, 174, 241, 347, 463, 514, 529, 562 |
| SfaNI | GCATC | 2 cut(s) | 403, 594 |
| Sfr274I | CTCGAG | 1 cut(s) | 120 |
| SlaI | CTCGAG | 1 cut(s) | 120 |
| SmaI | CCCGGG | 1 cut(s) | 95 |
| SmlI | CTYRAG | 1 cut(s) | 120 |
| SmoI | CTYRAG | 1 cut(s) | 120 |
| SrfI | GCCCGGGC | 1 cut(s) | 95 |
| Sse9I | AATT | 9 cut(s) | 150, 199, 222, 243, 354, 380, 505, 541, 616 |
| SsiI | CCGC | 1 cut(s) | 25 |
| SspMI | CTAG | 5 cut(s) | 129, 173, 312, 546, 582 |
| StyD4I | CCNGG | 2 cut(s) | 92, 93 |
| StyI | CCWWGG | 1 cut(s) | 211 |
| TaqI | TCGA | 1 cut(s) | 121 |
| TasI | AATT | 9 cut(s) | 150, 199, 222, 243, 354, 380, 505, 541, 616 |
| TfiI | GAWTC | 2 cut(s) | 299, 574 |
| Tru1I | TTAA | 3 cut(s) | 242, 387, 540 |
| Tru9I | TTAA | 3 cut(s) | 242, 387, 540 |
| TseFI | GTSAC | 3 cut(s) | 138, 227, 277 |
| TseI | GCWGC | 3 cut(s) | 116, 308, 512 |
| Tsp45I | GTSAC | 3 cut(s) | 138, 227, 277 |
| TspDTI | ATGAA | 1 cut(s) | 420 |
| TspMI | CCCGGG | 1 cut(s) | 93 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 382 |
| XceI | RCATGY | 1 cut(s) | 49 |
| XhoI | CTCGAG | 1 cut(s) | 120 |
| XmaI | CCCGGG | 1 cut(s) | 93 |
| XspI | CTAG | 5 cut(s) | 129, 173, 312, 546, 582 |