Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 468 |
| Acc65I | GGTACC | 1 cut(s) | 485 |
| AccB1I | GGYRCC | 1 cut(s) | 485 |
| AccIII | TCCGGA | 1 cut(s) | 328 |
| AclWI | GGATC | 3 cut(s) | 210, 511, 524 |
| AcsI | RAATTY | 3 cut(s) | 266, 315, 379 |
| AdeI | CACNNNGTG | 1 cut(s) | 143 |
| AfaI | GTAC | 2 cut(s) | 187, 487 |
| AflII | CTTAAG | 1 cut(s) | 451 |
| AgsI | TTSAA | 1 cut(s) | 561 |
| AjnI | CCWGG | 1 cut(s) | 218 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 193, 225 |
| AluBI | AGCT | 5 cut(s) | 46, 89, 160, 359, 458 |
| AluI | AGCT | 5 cut(s) | 46, 89, 160, 359, 458 |
| AlwI | GGATC | 3 cut(s) | 210, 511, 524 |
| Aor13HI | TCCGGA | 1 cut(s) | 328 |
| AoxI | GGCC | 1 cut(s) | 438 |
| ApeKI | GCWGC | 2 cut(s) | 154, 157 |
| ApoI | RAATTY | 3 cut(s) | 266, 315, 379 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 72 |
| Asp718I | GGTACC | 1 cut(s) | 485 |
| AspS9I | GGNCC | 1 cut(s) | 439 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 477, 510 |
| BamHI | GGATCC | 1 cut(s) | 516 |
| BanI | GGYRCC | 1 cut(s) | 485 |
| BbvI | GCAGC | 2 cut(s) | 166, 169 |
| BciT130I | CCWGG | 1 cut(s) | 220 |
| BfaI | CTAG | 1 cut(s) | 459 |
| BfrI | CTTAAG | 1 cut(s) | 451 |
| BisI | GCNGC | 2 cut(s) | 155, 158 |
| BlsI | GCNGC | 2 cut(s) | 156, 159 |
| Bme1390I | CCNGG | 1 cut(s) | 220 |
| BmgT120I | GGNCC | 1 cut(s) | 439 |
| BmiI | GGNNCC | 2 cut(s) | 487, 518 |
| BmrFI | CCNGG | 1 cut(s) | 220 |
| BmsI | GCATC | 1 cut(s) | 379 |
| BpmI | CTGGAG | 1 cut(s) | 331 |
| BpuEI | CTTGAG | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 215, 245 |
| Bse1I | ACTGG | 1 cut(s) | 518 |
| BseAI | TCCGGA | 1 cut(s) | 328 |
| BseBI | CCWGG | 1 cut(s) | 220 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseGI | GGATG | 1 cut(s) | 514 |
| BseMII | CTCAG | 2 cut(s) | 32, 104 |
| BseNI | ACTGG | 1 cut(s) | 518 |
| BseXI | GCAGC | 2 cut(s) | 166, 169 |
| BsgI | GTGCAG | 1 cut(s) | 75 |
| BshFI | GGCC | 1 cut(s) | 440 |
| BshNI | GGYRCC | 1 cut(s) | 485 |
| BsiSI | CCGG | 1 cut(s) | 329 |
| BslFI | GGGAC | 1 cut(s) | 512 |
| BsmFI | GGGAC | 1 cut(s) | 512 |
| BsnI | GGCC | 1 cut(s) | 440 |
| Bsp13I | TCCGGA | 1 cut(s) | 328 |
| Bsp143I | GATC | 3 cut(s) | 134, 215, 516 |
| BspANI | GGCC | 1 cut(s) | 440 |
| BspCNI | CTCAG | 2 cut(s) | 31, 103 |
| BspEI | TCCGGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 2 cut(s) | 487, 518 |
| BspPI | GGATC | 3 cut(s) | 210, 511, 524 |
| BspT107I | GGYRCC | 1 cut(s) | 485 |
| BspTI | CTTAAG | 1 cut(s) | 451 |
| BsrI | ACTGG | 1 cut(s) | 518 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 3 cut(s) | 134, 215, 516 |
| Bst2UI | CCWGG | 1 cut(s) | 220 |
| BstAFI | CTTAAG | 1 cut(s) | 451 |
| BstDEI | CTNAG | 3 cut(s) | 18, 50, 90 |
| BstF5I | GGATG | 1 cut(s) | 514 |
| BstKTI | GATC | 3 cut(s) | 137, 218, 519 |
| BstMBI | GATC | 3 cut(s) | 134, 215, 516 |
| BstNI | CCWGG | 1 cut(s) | 220 |
| BstNSI | RCATGY | 1 cut(s) | 154 |
| BstSCI | CCNGG | 1 cut(s) | 218 |
| BstV1I | GCAGC | 2 cut(s) | 166, 169 |
| BstX2I | RGATCY | 2 cut(s) | 215, 516 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 177 |
| BstYI | RGATCY | 2 cut(s) | 215, 516 |
| BsuRI | GGCC | 1 cut(s) | 440 |
| BtsCI | GGATG | 1 cut(s) | 514 |
| Cfr13I | GGNCC | 1 cut(s) | 439 |
| Csp6I | GTAC | 2 cut(s) | 186, 486 |
| CviAII | CATG | 2 cut(s) | 151, 397 |
| CviJI | RGCY | 7 cut(s) | 46, 89, 160, 309, 359, 440, 458 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 89, 160, 309, 359, 440, 458 |
| CviQI | GTAC | 2 cut(s) | 186, 486 |
| DdeI | CTNAG | 3 cut(s) | 18, 50, 90 |
| DpnI | GATC | 3 cut(s) | 136, 217, 518 |
| DpnII | GATC | 3 cut(s) | 134, 215, 516 |
| DraI | TTTAAA | 2 cut(s) | 265, 355 |
| DraIII | CACNNNGTG | 1 cut(s) | 143 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 468 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 468 |
| EcoRI | GAATTC | 1 cut(s) | 315 |
| EcoRII | CCWGG | 1 cut(s) | 218 |
| FaeI | CATG | 2 cut(s) | 154, 400 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 57, 89 |
| FaqI | GGGAC | 1 cut(s) | 512 |
| FatI | CATG | 2 cut(s) | 150, 396 |
| FauNDI | CATATG | 1 cut(s) | 274 |
| Fnu4HI | GCNGC | 2 cut(s) | 155, 158 |
| FokI | GGATG | 1 cut(s) | 521 |
| Fsp4HI | GCNGC | 2 cut(s) | 155, 158 |
| FspBI | CTAG | 1 cut(s) | 459 |
| GluI | GCNGC | 2 cut(s) | 155, 158 |
| GsuI | CTGGAG | 1 cut(s) | 331 |
| HaeIII | GGCC | 1 cut(s) | 440 |
| HapII | CCGG | 1 cut(s) | 329 |
| Hin1II | CATG | 2 cut(s) | 154, 400 |
| HindIII | AAGCTT | 1 cut(s) | 44 |
| HinfI | GANTC | 2 cut(s) | 12, 557 |
| HpaII | CCGG | 1 cut(s) | 329 |
| Hpy166II | GTNNAC | 1 cut(s) | 496 |
| Hpy188I | TCNGA | 2 cut(s) | 21, 93 |
| Hpy188III | TCNNGA | 3 cut(s) | 329, 386, 520 |
| Hpy8I | GTNNAC | 1 cut(s) | 496 |
| HpyAV | CCTTC | 1 cut(s) | 420 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 154, 278 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 50, 90 |
| Hsp92II | CATG | 2 cut(s) | 154, 400 |
| Kpn2I | TCCGGA | 1 cut(s) | 328 |
| KpnI | GGTACC | 1 cut(s) | 489 |
| Kzo9I | GATC | 3 cut(s) | 134, 215, 516 |
| LpnPI | CCDG | 8 cut(s) | 42, 205, 232, 234, 295, 342, 459, 499 |
| Lsp1109I | GCAGC | 2 cut(s) | 166, 169 |
| LweI | GCATC | 1 cut(s) | 379 |
| MaeI | CTAG | 1 cut(s) | 459 |
| MaeIII | GTNAC | 1 cut(s) | 126 |
| MalI | GATC | 3 cut(s) | 136, 217, 518 |
| MboI | GATC | 3 cut(s) | 134, 215, 516 |
| MfeI | CAATTG | 1 cut(s) | 31 |
| MflI | RGATCY | 2 cut(s) | 215, 516 |
| MluCI | AATT | 7 cut(s) | 31, 68, 266, 315, 379, 474, 561 |
| MlyI | GAGTC | 1 cut(s) | 6 |
| MnlI | CCTC | 8 cut(s) | 30, 53, 141, 245, 430, 499, 499, 541 |
| MroI | TCCGGA | 1 cut(s) | 328 |
| MroXI | GAANNNNTTC | 1 cut(s) | 72 |
| MseI | TTAA | 5 cut(s) | 26, 78, 264, 354, 452 |
| MspCI | CTTAAG | 1 cut(s) | 451 |
| MspI | CCGG | 1 cut(s) | 329 |
| MspR9I | CCNGG | 1 cut(s) | 220 |
| MunI | CAATTG | 1 cut(s) | 31 |
| MvaI | CCWGG | 1 cut(s) | 220 |
| NdeI | CATATG | 1 cut(s) | 274 |
| NdeII | GATC | 3 cut(s) | 134, 215, 516 |
| NlaIII | CATG | 2 cut(s) | 154, 400 |
| NlaIV | GGNNCC | 2 cut(s) | 487, 518 |
| NspI | RCATGY | 1 cut(s) | 154 |
| PdmI | GAANNNNTTC | 1 cut(s) | 72 |
| PfeI | GAWTC | 1 cut(s) | 557 |
| PkrI | GCNGC | 2 cut(s) | 156, 159 |
| PleI | GAGTC | 1 cut(s) | 6 |
| PpsI | GAGTC | 1 cut(s) | 6 |
| Psp6I | CCWGG | 1 cut(s) | 218 |
| PspGI | CCWGG | 1 cut(s) | 218 |
| PspN4I | GGNNCC | 2 cut(s) | 487, 518 |
| PspPI | GGNCC | 1 cut(s) | 439 |
| PsuI | RGATCY | 2 cut(s) | 215, 516 |
| RsaI | GTAC | 2 cut(s) | 187, 487 |
| RsaNI | GTAC | 2 cut(s) | 186, 486 |
| SaqAI | TTAA | 5 cut(s) | 26, 78, 264, 354, 452 |
| SatI | GCNGC | 2 cut(s) | 155, 158 |
| Sau3AI | GATC | 3 cut(s) | 134, 215, 516 |
| Sau96I | GGNCC | 1 cut(s) | 439 |
| SchI | GAGTC | 1 cut(s) | 6 |
| ScrFI | CCNGG | 1 cut(s) | 220 |
| SfaNI | GCATC | 1 cut(s) | 379 |
| SmlI | CTYRAG | 2 cut(s) | 345, 451 |
| SmoI | CTYRAG | 2 cut(s) | 345, 451 |
| Sse9I | AATT | 7 cut(s) | 31, 68, 266, 315, 379, 474, 561 |
| SspMI | CTAG | 1 cut(s) | 459 |
| StyD4I | CCNGG | 1 cut(s) | 218 |
| TaqI | TCGA | 2 cut(s) | 133, 472 |
| TasI | AATT | 7 cut(s) | 31, 68, 266, 315, 379, 474, 561 |
| TatI | WGTACW | 1 cut(s) | 185 |
| TfiI | GAWTC | 1 cut(s) | 557 |
| Tru1I | TTAA | 5 cut(s) | 26, 78, 264, 354, 452 |
| Tru9I | TTAA | 5 cut(s) | 26, 78, 264, 354, 452 |
| TseI | GCWGC | 2 cut(s) | 154, 157 |
| TspDTI | ATGAA | 5 cut(s) | 17, 128, 207, 258, 402 |
| Vha464I | CTTAAG | 1 cut(s) | 451 |
| XapI | RAATTY | 3 cut(s) | 266, 315, 379 |
| XceI | RCATGY | 1 cut(s) | 154 |
| XmnI | GAANNNNTTC | 1 cut(s) | 72 |
| XspI | CTAG | 1 cut(s) | 459 |