ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 309 |
| AccI | GTMKAC | 1 cut(s) | 194 |
| AciI | CCGC | 1 cut(s) | 202 |
| AclWI | GGATC | 4 cut(s) | 13, 58, 255, 486 |
| AcsI | RAATTY | 2 cut(s) | 151, 450 |
| AcuI | CTGAAG | 1 cut(s) | 226 |
| AfaI | GTAC | 3 cut(s) | 105, 265, 343 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 338, 595 |
| AgsI | TTSAA | 2 cut(s) | 133, 410 |
| AjnI | CCWGG | 2 cut(s) | 210, 290 |
| AluBI | AGCT | 4 cut(s) | 137, 233, 542, 550 |
| AluI | AGCT | 4 cut(s) | 137, 233, 542, 550 |
| Alw26I | GTCTC | 1 cut(s) | 548 |
| AlwI | GGATC | 4 cut(s) | 13, 58, 255, 486 |
| Ama87I | CYCGRG | 1 cut(s) | 234 |
| AoxI | GGCC | 1 cut(s) | 467 |
| ApeKI | GCWGC | 1 cut(s) | 573 |
| ApoI | RAATTY | 2 cut(s) | 151, 450 |
| AspLEI | GCGC | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| AvaI | CYCGRG | 1 cut(s) | 234 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 65, 98, 255, 288 |
| BbsI | GAAGAC | 1 cut(s) | 291 |
| BbvCI | CCTCAGC | 1 cut(s) | 171 |
| BbvI | GCAGC | 1 cut(s) | 560 |
| BccI | CCATC | 2 cut(s) | 30, 427 |
| BceAI | ACGGC | 1 cut(s) | 304 |
| BciT130I | CCWGG | 2 cut(s) | 212, 292 |
| BciVI | GTATCC | 1 cut(s) | 218 |
| BcoDI | GTCTC | 1 cut(s) | 548 |
| BfaI | CTAG | 1 cut(s) | 543 |
| BfuI | GTATCC | 1 cut(s) | 218 |
| BisI | GCNGC | 1 cut(s) | 574 |
| BlsI | GCNGC | 1 cut(s) | 575 |
| Bme1390I | CCNGG | 2 cut(s) | 212, 292 |
| BmeT110I | CYCGRG | 1 cut(s) | 234 |
| BmrFI | CCNGG | 2 cut(s) | 212, 292 |
| BpiI | GAAGAC | 1 cut(s) | 291 |
| BpmI | CTGGAG | 1 cut(s) | 572 |
| Bpu10I | CCTNAGC | 1 cut(s) | 171 |
| BsaAI | YACGTR | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 2 cut(s) | 290, 333 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 338, 595 |
| Bse118I | RCCGGY | 1 cut(s) | 469 |
| BseBI | CCWGG | 2 cut(s) | 212, 292 |
| BseDI | CCNNGG | 2 cut(s) | 290, 333 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 338, 595 |
| BseMII | CTCAG | 1 cut(s) | 162 |
| BseRI | GAGGAG | 2 cut(s) | 74, 77 |
| BseXI | GCAGC | 1 cut(s) | 560 |
| BshFI | GGCC | 1 cut(s) | 469 |
| BsiHKCI | CYCGRG | 1 cut(s) | 234 |
| BsiSI | CCGG | 2 cut(s) | 470, 589 |
| BslFI | GGGAC | 1 cut(s) | 522 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 338, 595 |
| BsmAI | GTCTC | 1 cut(s) | 548 |
| BsmFI | GGGAC | 1 cut(s) | 522 |
| BsnI | GGCC | 1 cut(s) | 469 |
| BsoBI | CYCGRG | 1 cut(s) | 234 |
| Bsp143I | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| Bsp19I | CCATGG | 1 cut(s) | 333 |
| BspACI | CCGC | 1 cut(s) | 202 |
| BspANI | GGCC | 1 cut(s) | 469 |
| BspCNI | CTCAG | 1 cut(s) | 163 |
| BspPI | GGATC | 4 cut(s) | 13, 58, 255, 486 |
| BsrFI | RCCGGY | 1 cut(s) | 469 |
| BssAI | RCCGGY | 1 cut(s) | 469 |
| BssECI | CCNNGG | 2 cut(s) | 290, 333 |
| BssMI | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| BssNAI | GTATAC | 1 cut(s) | 195 |
| BssT1I | CCWWGG | 1 cut(s) | 333 |
| Bst1107I | GTATAC | 1 cut(s) | 195 |
| Bst2UI | CCWGG | 2 cut(s) | 212, 292 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| Bst6I | CTCTTC | 2 cut(s) | 86, 405 |
| BstBAI | YACGTR | 1 cut(s) | 198 |
| BstC8I | GCNNGC | 2 cut(s) | 168, 217 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstDSI | CCRYGG | 1 cut(s) | 333 |
| BstHHI | GCGC | 1 cut(s) | 124 |
| BstKTI | GATC | 5 cut(s) | 21, 53, 250, 367, 481 |
| BstMAI | GTCTC | 1 cut(s) | 548 |
| BstMBI | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| BstNI | CCWGG | 2 cut(s) | 212, 292 |
| BstSCI | CCNGG | 2 cut(s) | 210, 290 |
| BstV1I | GCAGC | 1 cut(s) | 560 |
| BstV2I | GAAGAC | 1 cut(s) | 291 |
| BstX2I | RGATCY | 1 cut(s) | 18 |
| BstYI | RGATCY | 1 cut(s) | 18 |
| BstZ17I | GTATAC | 1 cut(s) | 195 |
| BsuI | GTATCC | 1 cut(s) | 218 |
| BsuRI | GGCC | 1 cut(s) | 469 |
| BtgI | CCRYGG | 1 cut(s) | 333 |
| BtsI | GCAGTG | 1 cut(s) | 299 |
| BtsIMutI | CAGTG | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 2 cut(s) | 168, 217 |
| CfoI | GCGC | 1 cut(s) | 124 |
| Cfr10I | RCCGGY | 1 cut(s) | 469 |
| Csp6I | GTAC | 3 cut(s) | 104, 264, 342 |
| CviAII | CATG | 4 cut(s) | 31, 87, 269, 334 |
| CviQI | GTAC | 3 cut(s) | 104, 264, 342 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 5 cut(s) | 20, 52, 249, 366, 480 |
| DpnII | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| Eam1104I | CTCTTC | 2 cut(s) | 86, 405 |
| EarI | CTCTTC | 2 cut(s) | 86, 405 |
| EciI | GGCGGA | 1 cut(s) | 217 |
| Eco130I | CCWWGG | 1 cut(s) | 333 |
| Eco57I | CTGAAG | 1 cut(s) | 226 |
| Eco88I | CYCGRG | 1 cut(s) | 234 |
| EcoRI | GAATTC | 1 cut(s) | 450 |
| EcoRII | CCWGG | 2 cut(s) | 210, 290 |
| EcoT14I | CCWWGG | 1 cut(s) | 333 |
| ErhI | CCWWGG | 1 cut(s) | 333 |
| FaeI | CATG | 4 cut(s) | 34, 90, 272, 337 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 308, 340, 497, 529 |
| FaqI | GGGAC | 1 cut(s) | 522 |
| FatI | CATG | 4 cut(s) | 30, 86, 268, 333 |
| FblI | GTMKAC | 1 cut(s) | 194 |
| Fnu4HI | GCNGC | 1 cut(s) | 574 |
| Fsp4HI | GCNGC | 1 cut(s) | 574 |
| FspBI | CTAG | 1 cut(s) | 543 |
| GlaI | GCGC | 1 cut(s) | 123 |
| GluI | GCNGC | 1 cut(s) | 574 |
| GsuI | CTGGAG | 1 cut(s) | 572 |
| HaeIII | GGCC | 1 cut(s) | 469 |
| HapII | CCGG | 2 cut(s) | 470, 589 |
| HhaI | GCGC | 1 cut(s) | 124 |
| Hin1II | CATG | 4 cut(s) | 34, 90, 272, 337 |
| Hin6I | GCGC | 1 cut(s) | 122 |
| HinP1I | GCGC | 1 cut(s) | 122 |
| HinfI | GANTC | 2 cut(s) | 374, 510 |
| HpaII | CCGG | 2 cut(s) | 470, 589 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy166II | GTNNAC | 3 cut(s) | 104, 195, 420 |
| Hpy188I | TCNGA | 1 cut(s) | 379 |
| Hpy8I | GTNNAC | 3 cut(s) | 104, 195, 420 |
| HpyAV | CCTTC | 3 cut(s) | 49, 110, 499 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4IV | ACGT | 1 cut(s) | 197 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| HpySE526I | ACGT | 1 cut(s) | 197 |
| Hsp92II | CATG | 4 cut(s) | 34, 90, 272, 337 |
| HspAI | GCGC | 1 cut(s) | 122 |
| Kzo9I | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| LmnI | GCTCC | 1 cut(s) | 119 |
| Lsp1109I | GCAGC | 1 cut(s) | 560 |
| MaeI | CTAG | 1 cut(s) | 543 |
| MaeII | ACGT | 1 cut(s) | 197 |
| MalI | GATC | 5 cut(s) | 20, 52, 249, 366, 480 |
| MboI | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| MboII | GAAGA | 8 cut(s) | 79, 82, 103, 296, 316, 359, 422, 442 |
| MflI | RGATCY | 1 cut(s) | 18 |
| MluCI | AATT | 8 cut(s) | 139, 151, 252, 310, 405, 441, 450, 532 |
| MlyI | GAGTC | 1 cut(s) | 504 |
| MmeI | TCCRAC | 1 cut(s) | 157 |
| MnlI | CCTC | 6 cut(s) | 52, 55, 166, 217, 230, 459 |
| MseI | TTAA | 4 cut(s) | 315, 396, 516, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 332 |
| MspI | CCGG | 2 cut(s) | 470, 589 |
| MspR9I | CCNGG | 2 cut(s) | 212, 292 |
| MvaI | CCWGG | 2 cut(s) | 212, 292 |
| NcoI | CCATGG | 1 cut(s) | 333 |
| NdeII | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| NlaIII | CATG | 4 cut(s) | 34, 90, 272, 337 |
| PaeR7I | CTCGAG | 1 cut(s) | 234 |
| PfeI | GAWTC | 1 cut(s) | 374 |
| PkrI | GCNGC | 1 cut(s) | 575 |
| PleI | GAGTC | 1 cut(s) | 504 |
| PpsI | GAGTC | 1 cut(s) | 504 |
| Ppu21I | YACGTR | 1 cut(s) | 198 |
| PsiI | TTATAA | 1 cut(s) | 309 |
| Psp6I | CCWGG | 2 cut(s) | 210, 290 |
| PspGI | CCWGG | 2 cut(s) | 210, 290 |
| PspXI | VCTCGAGB | 1 cut(s) | 234 |
| PsuI | RGATCY | 1 cut(s) | 18 |
| RsaI | GTAC | 3 cut(s) | 105, 265, 343 |
| RsaNI | GTAC | 3 cut(s) | 104, 264, 342 |
| RseI | CAYNNNNRTG | 1 cut(s) | 332 |
| SaqAI | TTAA | 4 cut(s) | 315, 396, 516, 522 |
| SatI | GCNGC | 1 cut(s) | 574 |
| Sau3AI | GATC | 5 cut(s) | 18, 50, 247, 364, 478 |
| SchI | GAGTC | 1 cut(s) | 504 |
| ScrFI | CCNGG | 2 cut(s) | 212, 292 |
| Sfr274I | CTCGAG | 1 cut(s) | 234 |
| SlaI | CTCGAG | 1 cut(s) | 234 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 332 |
| SmlI | CTYRAG | 1 cut(s) | 234 |
| SmoI | CTYRAG | 1 cut(s) | 234 |
| Sse9I | AATT | 8 cut(s) | 139, 151, 252, 310, 405, 441, 450, 532 |
| SsiI | CCGC | 1 cut(s) | 202 |
| SspMI | CTAG | 1 cut(s) | 543 |
| StyD4I | CCNGG | 2 cut(s) | 210, 290 |
| StyI | CCWWGG | 1 cut(s) | 333 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaiI | ACGT | 1 cut(s) | 200 |
| TaqI | TCGA | 3 cut(s) | 53, 235, 481 |
| TasI | AATT | 8 cut(s) | 139, 151, 252, 310, 405, 441, 450, 532 |
| TfiI | GAWTC | 1 cut(s) | 374 |
| Tru1I | TTAA | 4 cut(s) | 315, 396, 516, 522 |
| Tru9I | TTAA | 4 cut(s) | 315, 396, 516, 522 |
| TscAI | CASTG | 1 cut(s) | 306 |
| TseI | GCWGC | 1 cut(s) | 573 |
| TspRI | CASTG | 1 cut(s) | 306 |
| XapI | RAATTY | 2 cut(s) | 151, 450 |
| XhoI | CTCGAG | 1 cut(s) | 234 |
| XmiI | GTMKAC | 1 cut(s) | 194 |
| XspI | CTAG | 1 cut(s) | 543 |