Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 54 | 8.1e-07 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 366 |
| Acc36I | ACCTGC | 2 cut(s) | 29, 366 |
| AciI | CCGC | 1 cut(s) | 360 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcyI | GRCGYC | 1 cut(s) | 342 |
| AdeI | CACNNNGTG | 1 cut(s) | 35 |
| AfaI | GTAC | 1 cut(s) | 57 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 120, 121 |
| AgsI | TTSAA | 1 cut(s) | 86 |
| AhlI | ACTAGT | 1 cut(s) | 103 |
| AluBI | AGCT | 1 cut(s) | 82 |
| AluI | AGCT | 1 cut(s) | 82 |
| Alw26I | GTCTC | 1 cut(s) | 223 |
| AlwI | GGATC | 1 cut(s) | 141 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 196 |
| ApeKI | GCWGC | 1 cut(s) | 276 |
| AspS9I | GGNCC | 1 cut(s) | 206 |
| AvaII | GGWCC | 1 cut(s) | 206 |
| BbvI | GCAGC | 1 cut(s) | 288 |
| BccI | CCATC | 3 cut(s) | 235, 257, 307 |
| BcoDI | GTCTC | 1 cut(s) | 223 |
| BcuI | ACTAGT | 1 cut(s) | 103 |
| BfaI | CTAG | 2 cut(s) | 104, 285 |
| BfuAI | ACCTGC | 2 cut(s) | 29, 366 |
| BisI | GCNGC | 1 cut(s) | 277 |
| BlsI | GCNGC | 1 cut(s) | 278 |
| Bme18I | GGWCC | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 1 cut(s) | 206 |
| BmsI | GCATC | 1 cut(s) | 340 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 120, 152, 122, 154 |
| BsaHI | GRCGYC | 1 cut(s) | 342 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 120, 121 |
| Bse1I | ACTGG | 1 cut(s) | 361 |
| BseGI | GGATG | 3 cut(s) | 76, 318, 372 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 120, 121 |
| BseMII | CTCAG | 1 cut(s) | 9 |
| BseNI | ACTGG | 1 cut(s) | 361 |
| BseRI | GAGGAG | 1 cut(s) | 182 |
| BseXI | GCAGC | 1 cut(s) | 288 |
| BsgI | GTGCAG | 1 cut(s) | 57 |
| BslFI | GGGAC | 1 cut(s) | 353 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 120, 121 |
| BsmAI | GTCTC | 1 cut(s) | 223 |
| BsmFI | GGGAC | 1 cut(s) | 353 |
| BsmI | GAATGC | 1 cut(s) | 279 |
| Bsp1407I | TGTACA | 1 cut(s) | 55 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| BspACI | CCGC | 1 cut(s) | 360 |
| BspCNI | CTCAG | 1 cut(s) | 10 |
| BspMI | ACCTGC | 2 cut(s) | 29, 366 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BsrGI | TGTACA | 1 cut(s) | 55 |
| BsrI | ACTGG | 1 cut(s) | 361 |
| BssMI | GATC | 1 cut(s) | 133 |
| BssNI | GRCGYC | 1 cut(s) | 342 |
| BstACI | GRCGYC | 1 cut(s) | 342 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 35 |
| BstAUI | TGTACA | 1 cut(s) | 55 |
| BstDEI | CTNAG | 1 cut(s) | 18 |
| BstF5I | GGATG | 3 cut(s) | 76, 318, 372 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMAI | GTCTC | 1 cut(s) | 223 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 35, 350 |
| BstNSI | RCATGY | 1 cut(s) | 224 |
| BstV1I | GCAGC | 1 cut(s) | 288 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BtgZI | GCGATG | 1 cut(s) | 276 |
| BtsCI | GGATG | 3 cut(s) | 76, 318, 372 |
| BveI | ACCTGC | 2 cut(s) | 29, 366 |
| CaiI | CAGNNNCTG | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 1 cut(s) | 206 |
| CseI | GACGC | 1 cut(s) | 350 |
| Csp6I | GTAC | 1 cut(s) | 56 |
| CviAII | CATG | 3 cut(s) | 110, 221, 253 |
| CviJI | RGCY | 5 cut(s) | 53, 82, 179, 196, 328 |
| CviKI_1 | RGCY | 5 cut(s) | 53, 82, 179, 196, 328 |
| CviQI | GTAC | 1 cut(s) | 56 |
| DdeI | CTNAG | 1 cut(s) | 18 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| DraIII | CACNNNGTG | 1 cut(s) | 35 |
| Eco47I | GGWCC | 1 cut(s) | 206 |
| FaeI | CATG | 3 cut(s) | 113, 224, 256 |
| FaiI | YATR | 9 cut(s) | 77, 99, 111, 222, 227, 234, 254, 332, 373 |
| FaqI | GGGAC | 1 cut(s) | 353 |
| FatI | CATG | 3 cut(s) | 109, 220, 252 |
| Fnu4HI | GCNGC | 1 cut(s) | 277 |
| FokI | GGATG | 2 cut(s) | 83, 325 |
| Fsp4HI | GCNGC | 1 cut(s) | 277 |
| FspBI | CTAG | 2 cut(s) | 104, 285 |
| GluI | GCNGC | 1 cut(s) | 277 |
| HgaI | GACGC | 1 cut(s) | 350 |
| Hin1I | GRCGYC | 1 cut(s) | 342 |
| Hin1II | CATG | 3 cut(s) | 113, 224, 256 |
| HinfI | GANTC | 2 cut(s) | 86, 320 |
| Hpy166II | GTNNAC | 2 cut(s) | 185, 206 |
| Hpy188I | TCNGA | 4 cut(s) | 91, 142, 192, 240 |
| Hpy188III | TCNNGA | 2 cut(s) | 62, 298 |
| Hpy8I | GTNNAC | 2 cut(s) | 185, 206 |
| HpyCH4V | TGCA | 4 cut(s) | 13, 38, 101, 375 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 35, 350 |
| HpyF3I | CTNAG | 1 cut(s) | 18 |
| Hsp92I | GRCGYC | 1 cut(s) | 342 |
| Hsp92II | CATG | 3 cut(s) | 113, 224, 256 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LpnPI | CCDG | 5 cut(s) | 24, 165, 182, 342, 361 |
| Lsp1109I | GCAGC | 1 cut(s) | 288 |
| LweI | GCATC | 1 cut(s) | 340 |
| MaeI | CTAG | 2 cut(s) | 104, 285 |
| MalI | GATC | 1 cut(s) | 135 |
| MboI | GATC | 1 cut(s) | 133 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MlyI | GAGTC | 1 cut(s) | 314 |
| MnlI | CCTC | 7 cut(s) | 13, 124, 160, 163, 186, 240, 310 |
| MseI | TTAA | 1 cut(s) | 47 |
| Mva1269I | GAATGC | 1 cut(s) | 279 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 35, 350 |
| NdeII | GATC | 1 cut(s) | 133 |
| NlaIII | CATG | 3 cut(s) | 113, 224, 256 |
| NspI | RCATGY | 1 cut(s) | 224 |
| PaqCI | CACCTGC | 1 cut(s) | 366 |
| PctI | GAATGC | 1 cut(s) | 279 |
| PfeI | GAWTC | 1 cut(s) | 86 |
| PkrI | GCNGC | 1 cut(s) | 278 |
| PleI | GAGTC | 1 cut(s) | 314 |
| PpsI | GAGTC | 1 cut(s) | 314 |
| PspPI | GGNCC | 1 cut(s) | 206 |
| PstNI | CAGNNNCTG | 1 cut(s) | 196 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 57 |
| RsaNI | GTAC | 1 cut(s) | 56 |
| SaqAI | TTAA | 1 cut(s) | 47 |
| SatI | GCNGC | 1 cut(s) | 277 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| Sau96I | GGNCC | 1 cut(s) | 206 |
| SchI | GAGTC | 1 cut(s) | 314 |
| SetI | ASST | 7 cut(s) | 24, 43, 84, 174, 205, 218, 380 |
| SfaNI | GCATC | 1 cut(s) | 340 |
| SinI | GGWCC | 1 cut(s) | 206 |
| SpeI | ACTAGT | 1 cut(s) | 103 |
| SsiI | CCGC | 1 cut(s) | 360 |
| SspMI | CTAG | 2 cut(s) | 104, 285 |
| TaqI | TCGA | 1 cut(s) | 297 |
| TaqII | GACCGA | 1 cut(s) | 223 |
| TatI | WGTACW | 1 cut(s) | 55 |
| TfiI | GAWTC | 1 cut(s) | 86 |
| Tru1I | TTAA | 1 cut(s) | 47 |
| Tru9I | TTAA | 1 cut(s) | 47 |
| TseI | GCWGC | 1 cut(s) | 276 |
| TspDTI | ATGAA | 1 cut(s) | 98 |
| TspGWI | ACGGA | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 1 cut(s) | 206 |
| XceI | RCATGY | 1 cut(s) | 224 |
| XspI | CTAG | 2 cut(s) | 104, 285 |