Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 116 | 4.8e-23 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 10 |
| AccI | GTMKAC | 1 cut(s) | 187 |
| AclWI | GGATC | 1 cut(s) | 292 |
| AcuI | CTGAAG | 1 cut(s) | 234 |
| AfaI | GTAC | 2 cut(s) | 82, 424 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 15 |
| AflIII | ACRYGT | 1 cut(s) | 425 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 183 |
| AjnI | CCWGG | 2 cut(s) | 8, 391 |
| AleI | CACNNNNGTG | 1 cut(s) | 56 |
| AluBI | AGCT | 1 cut(s) | 203 |
| AluI | AGCT | 1 cut(s) | 203 |
| Alw21I | GWGCWC | 1 cut(s) | 364 |
| Alw44I | GTGCAC | 1 cut(s) | 360 |
| AlwI | GGATC | 1 cut(s) | 292 |
| AoxI | GGCC | 2 cut(s) | 111, 161 |
| ApaLI | GTGCAC | 1 cut(s) | 360 |
| AspLEI | GCGC | 1 cut(s) | 212 |
| AspS9I | GGNCC | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 1 cut(s) | 364 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 216, 249 |
| Bbv12I | GWGCWC | 1 cut(s) | 364 |
| BccI | CCATC | 1 cut(s) | 395 |
| BciT130I | CCWGG | 2 cut(s) | 10, 393 |
| BciVI | GTATCC | 1 cut(s) | 217 |
| BfaI | CTAG | 2 cut(s) | 323, 357 |
| BfuI | GTATCC | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 2 cut(s) | 10, 393 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 183 |
| BmgT120I | GGNCC | 1 cut(s) | 161 |
| BmiI | GGNNCC | 1 cut(s) | 162 |
| BmrFI | CCNGG | 2 cut(s) | 10, 393 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 212, 244 |
| BpmI | CTGGAG | 1 cut(s) | 375 |
| BsaBI | GATNNNNATC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 1 cut(s) | 114 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 15 |
| Bse1I | ACTGG | 1 cut(s) | 164 |
| Bse8I | GATNNNNATC | 1 cut(s) | 153 |
| BseBI | CCWGG | 2 cut(s) | 10, 393 |
| BseDI | CCNNGG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 1 cut(s) | 153 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BseNI | ACTGG | 1 cut(s) | 164 |
| BseSI | GKGCMC | 1 cut(s) | 364 |
| BshFI | GGCC | 2 cut(s) | 113, 163 |
| BsiHKAI | GWGCWC | 1 cut(s) | 364 |
| BslFI | GGGAC | 2 cut(s) | 88, 371 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BsmFI | GGGAC | 2 cut(s) | 88, 371 |
| BsnI | GGCC | 2 cut(s) | 113, 163 |
| Bsp1286I | GDGCHC | 1 cut(s) | 364 |
| Bsp1407I | TGTACA | 1 cut(s) | 422 |
| Bsp143I | GATC | 2 cut(s) | 154, 284 |
| BspANI | GGCC | 2 cut(s) | 113, 163 |
| BspLI | GGNNCC | 1 cut(s) | 162 |
| BspPI | GGATC | 1 cut(s) | 292 |
| BsrGI | TGTACA | 1 cut(s) | 422 |
| BsrI | ACTGG | 1 cut(s) | 164 |
| BssECI | CCNNGG | 1 cut(s) | 114 |
| BssMI | GATC | 2 cut(s) | 154, 284 |
| BssT1I | CCWWGG | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 2 cut(s) | 10, 393 |
| Bst4CI | ACNGT | 1 cut(s) | 55 |
| Bst6I | CTCTTC | 1 cut(s) | 265 |
| BstAUI | TGTACA | 1 cut(s) | 422 |
| BstC8I | GCNNGC | 2 cut(s) | 133, 201 |
| BstDEI | CTNAG | 1 cut(s) | 339 |
| BstHHI | GCGC | 1 cut(s) | 212 |
| BstKTI | GATC | 2 cut(s) | 157, 287 |
| BstMBI | GATC | 2 cut(s) | 154, 284 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 209, 344 |
| BstNI | CCWGG | 2 cut(s) | 10, 393 |
| BstNSI | RCATGY | 2 cut(s) | 135, 386 |
| BstSCI | CCNGG | 2 cut(s) | 8, 391 |
| BstSLI | GKGCMC | 1 cut(s) | 364 |
| BsuI | GTATCC | 1 cut(s) | 217 |
| BsuRI | GGCC | 2 cut(s) | 113, 163 |
| BtsIMutI | CAGTG | 1 cut(s) | 60 |
| Cac8I | GCNNGC | 2 cut(s) | 133, 201 |
| CfoI | GCGC | 1 cut(s) | 212 |
| Cfr13I | GGNCC | 1 cut(s) | 161 |
| CsiI | ACCWGGT | 1 cut(s) | 8 |
| Csp6I | GTAC | 2 cut(s) | 81, 423 |
| CviAII | CATG | 5 cut(s) | 132, 169, 299, 372, 383 |
| CviJI | RGCY | 6 cut(s) | 62, 113, 119, 163, 203, 338 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 113, 119, 163, 203, 338 |
| CviQI | GTAC | 2 cut(s) | 81, 423 |
| DdeI | CTNAG | 1 cut(s) | 339 |
| DpnI | GATC | 2 cut(s) | 156, 286 |
| DpnII | GATC | 2 cut(s) | 154, 284 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 10 |
| DriI | GACNNNNNGTC | 1 cut(s) | 183 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 10 |
| Eam1104I | CTCTTC | 1 cut(s) | 265 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 265 |
| Eco130I | CCWWGG | 1 cut(s) | 114 |
| Eco147I | AGGCCT | 1 cut(s) | 113 |
| Eco32I | GATATC | 1 cut(s) | 256 |
| Eco57I | CTGAAG | 1 cut(s) | 234 |
| EcoRII | CCWGG | 2 cut(s) | 8, 391 |
| EcoRV | GATATC | 1 cut(s) | 256 |
| EcoT14I | CCWWGG | 1 cut(s) | 114 |
| ErhI | CCWWGG | 1 cut(s) | 114 |
| FaeI | CATG | 5 cut(s) | 135, 172, 302, 375, 386 |
| FaiI | YATR | 8 cut(s) | 133, 170, 300, 306, 330, 345, 373, 384 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 332, 364 |
| FaqI | GGGAC | 2 cut(s) | 88, 371 |
| FatI | CATG | 5 cut(s) | 131, 168, 298, 371, 382 |
| FblI | GTMKAC | 1 cut(s) | 187 |
| FspBI | CTAG | 2 cut(s) | 323, 357 |
| GlaI | GCGC | 1 cut(s) | 211 |
| GsuI | CTGGAG | 1 cut(s) | 375 |
| HaeIII | GGCC | 2 cut(s) | 113, 163 |
| HhaI | GCGC | 1 cut(s) | 212 |
| Hin1II | CATG | 5 cut(s) | 135, 172, 302, 375, 386 |
| Hin6I | GCGC | 1 cut(s) | 210 |
| HinP1I | GCGC | 1 cut(s) | 210 |
| HinfI | GANTC | 2 cut(s) | 41, 311 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 3 cut(s) | 188, 362, 425 |
| Hpy8I | GTNNAC | 3 cut(s) | 188, 362, 425 |
| HpyAV | CCTTC | 1 cut(s) | 209 |
| HpyCH4III | ACNGT | 1 cut(s) | 55 |
| HpyCH4IV | ACGT | 1 cut(s) | 427 |
| HpyCH4V | TGCA | 3 cut(s) | 135, 199, 362 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 209, 344 |
| HpyF3I | CTNAG | 1 cut(s) | 339 |
| HpySE526I | ACGT | 1 cut(s) | 427 |
| Hsp92II | CATG | 5 cut(s) | 135, 172, 302, 375, 386 |
| HspAI | GCGC | 1 cut(s) | 210 |
| Kzo9I | GATC | 2 cut(s) | 154, 284 |
| MabI | ACCWGGT | 1 cut(s) | 8 |
| MaeI | CTAG | 2 cut(s) | 323, 357 |
| MaeII | ACGT | 1 cut(s) | 427 |
| MalI | GATC | 2 cut(s) | 156, 286 |
| MboI | GATC | 2 cut(s) | 154, 284 |
| MboII | GAAGA | 2 cut(s) | 252, 264 |
| MhlI | GDGCHC | 1 cut(s) | 364 |
| MluCI | AATT | 1 cut(s) | 243 |
| MnlI | CCTC | 4 cut(s) | 103, 214, 238, 399 |
| MseI | TTAA | 2 cut(s) | 174, 430 |
| MslI | CAYNNNNRTG | 1 cut(s) | 56 |
| MspR9I | CCNGG | 2 cut(s) | 10, 393 |
| MvaI | CCWGG | 2 cut(s) | 10, 393 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 209, 344 |
| NdeII | GATC | 2 cut(s) | 154, 284 |
| NlaIII | CATG | 5 cut(s) | 135, 172, 302, 375, 386 |
| NlaIV | GGNNCC | 1 cut(s) | 162 |
| NspI | RCATGY | 2 cut(s) | 135, 386 |
| OliI | CACNNNNGTG | 1 cut(s) | 56 |
| PaeI | GCATGC | 1 cut(s) | 135 |
| PceI | AGGCCT | 1 cut(s) | 113 |
| PfeI | GAWTC | 2 cut(s) | 41, 311 |
| PfoI | TCCNGGA | 1 cut(s) | 391 |
| Psp6I | CCWGG | 2 cut(s) | 8, 391 |
| PspGI | CCWGG | 2 cut(s) | 8, 391 |
| PspN4I | GGNNCC | 1 cut(s) | 162 |
| PspPI | GGNCC | 1 cut(s) | 161 |
| RsaI | GTAC | 2 cut(s) | 82, 424 |
| RsaNI | GTAC | 2 cut(s) | 81, 423 |
| RseI | CAYNNNNRTG | 1 cut(s) | 56 |
| SaqAI | TTAA | 2 cut(s) | 174, 430 |
| Sau3AI | GATC | 2 cut(s) | 154, 284 |
| Sau96I | GGNCC | 1 cut(s) | 161 |
| ScrFI | CCNGG | 2 cut(s) | 10, 393 |
| SduI | GDGCHC | 1 cut(s) | 364 |
| SetI | ASST | 7 cut(s) | 14, 141, 205, 220, 230, 336, 430 |
| SexAI | ACCWGGT | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 56 |
| SphI | GCATGC | 1 cut(s) | 135 |
| Sse9I | AATT | 1 cut(s) | 243 |
| SseBI | AGGCCT | 1 cut(s) | 113 |
| SspMI | CTAG | 2 cut(s) | 323, 357 |
| StuI | AGGCCT | 1 cut(s) | 113 |
| StyD4I | CCNGG | 2 cut(s) | 8, 391 |
| StyI | CCWWGG | 1 cut(s) | 114 |
| TaaI | ACNGT | 1 cut(s) | 55 |
| TaiI | ACGT | 1 cut(s) | 430 |
| TaqI | TCGA | 1 cut(s) | 314 |
| TasI | AATT | 1 cut(s) | 243 |
| TatI | WGTACW | 2 cut(s) | 80, 422 |
| TfiI | GAWTC | 2 cut(s) | 41, 311 |
| Tru1I | TTAA | 2 cut(s) | 174, 430 |
| Tru9I | TTAA | 2 cut(s) | 174, 430 |
| TscAI | CASTG | 1 cut(s) | 60 |
| TspDTI | ATGAA | 1 cut(s) | 360 |
| TspGWI | ACGGA | 1 cut(s) | 220 |
| TspRI | CASTG | 1 cut(s) | 60 |
| VneI | GTGCAC | 1 cut(s) | 360 |
| XceI | RCATGY | 2 cut(s) | 135, 386 |
| XmiI | GTMKAC | 1 cut(s) | 187 |
| XspI | CTAG | 2 cut(s) | 323, 357 |