ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 146 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 3 cut(s) | 419, 512, 707 |
| AclWI | GGATC | 1 cut(s) | 425 |
| AcoI | YGGCCR | 1 cut(s) | 794 |
| AcsI | RAATTY | 2 cut(s) | 133, 476 |
| AcyI | GRCGYC | 1 cut(s) | 143 |
| AdeI | CACNNNGTG | 1 cut(s) | 371 |
| AfaI | GTAC | 1 cut(s) | 644 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AflII | CTTAAG | 1 cut(s) | 809 |
| AflIII | ACRYGT | 1 cut(s) | 533 |
| AgsI | TTSAA | 3 cut(s) | 13, 152, 679 |
| AjnI | CCWGG | 2 cut(s) | 18, 546 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 585, 617 |
| AluBI | AGCT | 8 cut(s) | 7, 257, 601, 653, 808, 926, 938, 1004 |
| AluI | AGCT | 8 cut(s) | 7, 257, 601, 653, 808, 926, 938, 1004 |
| Alw26I | GTCTC | 5 cut(s) | 44, 338, 382, 610, 894 |
| AlwI | GGATC | 1 cut(s) | 425 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| AoxI | GGCC | 2 cut(s) | 794, 1030 |
| ApeKI | GCWGC | 4 cut(s) | 4, 254, 257, 1004 |
| ApoI | RAATTY | 2 cut(s) | 133, 476 |
| AspS9I | GGNCC | 3 cut(s) | 16, 911, 1031 |
| AsuC2I | CCSGG | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 1 cut(s) | 383 |
| AsuII | TTCGAA | 1 cut(s) | 302 |
| AsuNHI | GCTAGC | 1 cut(s) | 260 |
| AvaII | GGWCC | 2 cut(s) | 16, 911 |
| AxyI | CCTNAGG | 2 cut(s) | 283, 738 |
| BbvI | GCAGC | 4 cut(s) | 16, 244, 266, 991 |
| BccI | CCATC | 4 cut(s) | 116, 164, 283, 963 |
| BceAI | ACGGC | 2 cut(s) | 781, 855 |
| BciT130I | CCWGG | 2 cut(s) | 20, 548 |
| BciVI | GTATCC | 1 cut(s) | 415 |
| BcnI | CCSGG | 1 cut(s) | 369 |
| BcoDI | GTCTC | 5 cut(s) | 44, 338, 382, 610, 894 |
| BfaI | CTAG | 2 cut(s) | 96, 261 |
| BfmI | CTRYAG | 5 cut(s) | 31, 189, 231, 252, 710 |
| BfrI | CTTAAG | 1 cut(s) | 809 |
| BfuI | GTATCC | 1 cut(s) | 415 |
| BisI | GCNGC | 4 cut(s) | 5, 255, 258, 1005 |
| BlsI | GCNGC | 4 cut(s) | 6, 256, 259, 1006 |
| Bme1390I | CCNGG | 3 cut(s) | 20, 369, 548 |
| Bme18I | GGWCC | 2 cut(s) | 16, 911 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 911, 1031 |
| BmiI | GGNNCC | 1 cut(s) | 320 |
| BmrFI | CCNGG | 3 cut(s) | 20, 369, 548 |
| BmrI | ACTGGG | 2 cut(s) | 263, 942 |
| BmsI | GCATC | 3 cut(s) | 52, 353, 427 |
| BmtI | GCTAGC | 1 cut(s) | 264 |
| BmuI | ACTGGG | 2 cut(s) | 263, 942 |
| Bpu14I | TTCGAA | 1 cut(s) | 302 |
| BpuEI | CTTGAG | 1 cut(s) | 634 |
| BpuMI | CCSGG | 1 cut(s) | 369 |
| BsaHI | GRCGYC | 1 cut(s) | 143 |
| BsaI | GGTCTC | 4 cut(s) | 44, 338, 610, 894 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 546, 657 |
| BsaWI | WCCGGW | 2 cut(s) | 433, 998 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 585, 615 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse1I | ACTGG | 3 cut(s) | 214, 269, 948 |
| Bse21I | CCTNAGG | 2 cut(s) | 283, 738 |
| Bse3DI | GCAATG | 1 cut(s) | 289 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseBI | CCWGG | 2 cut(s) | 20, 548 |
| BseDI | CCNNGG | 3 cut(s) | 120, 546, 657 |
| BseGI | GGATG | 2 cut(s) | 442, 974 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseMI | GCAATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 1 cut(s) | 752 |
| BseNI | ACTGG | 3 cut(s) | 214, 269, 948 |
| BseX3I | CGGCCG | 1 cut(s) | 794 |
| BseXI | GCAGC | 4 cut(s) | 16, 244, 266, 991 |
| BseYI | CCCAGC | 1 cut(s) | 294 |
| Bsh1285I | CGRYCG | 2 cut(s) | 516, 797 |
| BshFI | GGCC | 2 cut(s) | 796, 1032 |
| BsiEI | CGRYCG | 2 cut(s) | 516, 797 |
| BsiSI | CCGG | 3 cut(s) | 368, 434, 999 |
| BslFI | GGGAC | 3 cut(s) | 251, 257, 929 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsmAI | GTCTC | 5 cut(s) | 44, 338, 382, 610, 894 |
| BsmFI | GGGAC | 3 cut(s) | 251, 257, 929 |
| BsnI | GGCC | 2 cut(s) | 796, 1032 |
| Bso31I | GGTCTC | 4 cut(s) | 44, 338, 610, 894 |
| Bsp119I | TTCGAA | 1 cut(s) | 302 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp1407I | TGTACA | 1 cut(s) | 642 |
| Bsp143I | GATC | 3 cut(s) | 430, 585, 790 |
| BspACI | CCGC | 3 cut(s) | 419, 512, 707 |
| BspANI | GGCC | 2 cut(s) | 796, 1032 |
| BspCNI | CTCAG | 1 cut(s) | 751 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 1 cut(s) | 320 |
| BspMAI | CTGCAG | 1 cut(s) | 256 |
| BspOI | GCTAGC | 1 cut(s) | 264 |
| BspPI | GGATC | 1 cut(s) | 425 |
| BspQI | GCTCTTC | 1 cut(s) | 14 |
| BspT104I | TTCGAA | 1 cut(s) | 302 |
| BspTI | CTTAAG | 1 cut(s) | 809 |
| BspTNI | GGTCTC | 4 cut(s) | 44, 338, 610, 894 |
| BsrDI | GCAATG | 1 cut(s) | 289 |
| BsrGI | TGTACA | 1 cut(s) | 642 |
| BsrI | ACTGG | 3 cut(s) | 214, 269, 948 |
| BssECI | CCNNGG | 3 cut(s) | 120, 546, 657 |
| BssMI | GATC | 3 cut(s) | 430, 585, 790 |
| BssNI | GRCGYC | 1 cut(s) | 143 |
| BssT1I | CCWWGG | 2 cut(s) | 120, 657 |
| Bst2UI | CCWGG | 2 cut(s) | 20, 548 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 718 |
| Bst6I | CTCTTC | 1 cut(s) | 14 |
| BstACI | GRCGYC | 1 cut(s) | 143 |
| BstAFI | CTTAAG | 1 cut(s) | 809 |
| BstAUI | TGTACA | 1 cut(s) | 642 |
| BstBI | TTCGAA | 1 cut(s) | 302 |
| BstC8I | GCNNGC | 2 cut(s) | 262, 1041 |
| BstDEI | CTNAG | 2 cut(s) | 283, 738 |
| BstF5I | GGATG | 2 cut(s) | 442, 974 |
| BstKTI | GATC | 3 cut(s) | 433, 588, 793 |
| BstMAI | GTCTC | 5 cut(s) | 44, 338, 382, 610, 894 |
| BstMBI | GATC | 3 cut(s) | 430, 585, 790 |
| BstMCI | CGRYCG | 2 cut(s) | 516, 797 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 233, 659, 688 |
| BstNI | CCWGG | 2 cut(s) | 20, 548 |
| BstNSI | RCATGY | 2 cut(s) | 537, 1043 |
| BstSCI | CCNGG | 3 cut(s) | 18, 367, 546 |
| BstSFI | CTRYAG | 5 cut(s) | 31, 189, 231, 252, 710 |
| BstV1I | GCAGC | 4 cut(s) | 16, 244, 266, 991 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 664, 955 |
| BstZI | CGGCCG | 1 cut(s) | 794 |
| Bsu36I | CCTNAGG | 2 cut(s) | 283, 738 |
| BsuI | GTATCC | 1 cut(s) | 415 |
| BsuRI | GGCC | 2 cut(s) | 796, 1032 |
| BtsCI | GGATG | 2 cut(s) | 442, 974 |
| BtsI | GCAGTG | 3 cut(s) | 359, 1034, 1050 |
| BtsIMutI | CAGTG | 5 cut(s) | 207, 359, 421, 1034, 1050 |
| Cac8I | GCNNGC | 2 cut(s) | 262, 1041 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 911, 1031 |
| CseI | GACGC | 1 cut(s) | 253 |
| Csp6I | GTAC | 1 cut(s) | 643 |
| CviAII | CATG | 5 cut(s) | 59, 534, 637, 722, 1040 |
| CviQI | GTAC | 1 cut(s) | 643 |
| DdeI | CTNAG | 2 cut(s) | 283, 738 |
| DpnI | GATC | 3 cut(s) | 432, 587, 792 |
| DpnII | GATC | 3 cut(s) | 430, 585, 790 |
| DraIII | CACNNNGTG | 1 cut(s) | 371 |
| EaeI | YGGCCR | 1 cut(s) | 794 |
| EagI | CGGCCG | 1 cut(s) | 794 |
| Eam1104I | CTCTTC | 1 cut(s) | 14 |
| EarI | CTCTTC | 1 cut(s) | 14 |
| EclXI | CGGCCG | 1 cut(s) | 794 |
| Eco130I | CCWWGG | 2 cut(s) | 120, 657 |
| Eco31I | GGTCTC | 4 cut(s) | 44, 338, 610, 894 |
| Eco47I | GGWCC | 2 cut(s) | 16, 911 |
| Eco52I | CGGCCG | 1 cut(s) | 794 |
| Eco81I | CCTNAGG | 2 cut(s) | 283, 738 |
| EcoO109I | RGGNCCY | 1 cut(s) | 16 |
| EcoRII | CCWGG | 2 cut(s) | 18, 546 |
| EcoT14I | CCWWGG | 2 cut(s) | 120, 657 |
| EcoT22I | ATGCAT | 1 cut(s) | 346 |
| ErhI | CCWWGG | 2 cut(s) | 120, 657 |
| FaeI | CATG | 5 cut(s) | 62, 537, 640, 725, 1043 |
| FaqI | GGGAC | 3 cut(s) | 251, 257, 929 |
| FatI | CATG | 5 cut(s) | 58, 533, 636, 721, 1039 |
| FauI | CCCGC | 1 cut(s) | 714 |
| FauNDI | CATATG | 1 cut(s) | 907 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 255, 258, 1005 |
| FokI | GGATG | 2 cut(s) | 449, 981 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 255, 258, 1005 |
| FspBI | CTAG | 2 cut(s) | 96, 261 |
| GluI | GCNGC | 4 cut(s) | 5, 255, 258, 1005 |
| GsaI | CCCAGC | 1 cut(s) | 298 |
| HaeIII | GGCC | 2 cut(s) | 796, 1032 |
| HapII | CCGG | 3 cut(s) | 368, 434, 999 |
| HgaI | GACGC | 1 cut(s) | 253 |
| Hin1I | GRCGYC | 1 cut(s) | 143 |
| Hin1II | CATG | 5 cut(s) | 62, 537, 640, 725, 1043 |
| HincII | GTYRAC | 2 cut(s) | 141, 528 |
| HindII | GTYRAC | 2 cut(s) | 141, 528 |
| HindIII | AAGCTT | 1 cut(s) | 806 |
| HinfI | GANTC | 7 cut(s) | 195, 245, 304, 404, 551, 675, 772 |
| HpaII | CCGG | 3 cut(s) | 368, 434, 999 |
| HphI | GGTGA | 1 cut(s) | 383 |
| Hpy166II | GTNNAC | 4 cut(s) | 141, 357, 528, 643 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 382, 430 |
| Hpy188III | TCNNGA | 3 cut(s) | 242, 434, 835 |
| Hpy8I | GTNNAC | 4 cut(s) | 141, 357, 528, 643 |
| Hpy99I | CGWCG | 1 cut(s) | 898 |
| HpyAV | CCTTC | 1 cut(s) | 615 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 718 |
| HpyCH4IV | ACGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 254, 344, 982, 1039, 1043 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 233, 659, 688 |
| HpyF3I | CTNAG | 2 cut(s) | 283, 738 |
| HpySE526I | ACGT | 1 cut(s) | 143 |
| Hsp92I | GRCGYC | 1 cut(s) | 143 |
| Hsp92II | CATG | 5 cut(s) | 62, 537, 640, 725, 1043 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Kzo9I | GATC | 3 cut(s) | 430, 585, 790 |
| LguI | GCTCTTC | 1 cut(s) | 14 |
| LmnI | GCTCC | 2 cut(s) | 606, 1001 |
| Lsp1109I | GCAGC | 4 cut(s) | 16, 244, 266, 991 |
| LweI | GCATC | 3 cut(s) | 52, 353, 427 |
| MaeI | CTAG | 2 cut(s) | 96, 261 |
| MaeII | ACGT | 1 cut(s) | 143 |
| MaeIII | GTNAC | 2 cut(s) | 536, 632 |
| MalI | GATC | 3 cut(s) | 432, 587, 792 |
| MboI | GATC | 3 cut(s) | 430, 585, 790 |
| MboII | GAAGA | 2 cut(s) | 530, 595 |
| MfeI | CAATTG | 1 cut(s) | 621 |
| MluCI | AATT | 4 cut(s) | 133, 476, 621, 779 |
| MlyI | GAGTC | 2 cut(s) | 204, 781 |
| MmeI | TCCRAC | 1 cut(s) | 435 |
| MnlI | CCTC | 7 cut(s) | 436, 702, 747, 812, 901, 998, 1024 |
| Mph1103I | ATGCAT | 1 cut(s) | 346 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MseI | TTAA | 2 cut(s) | 810, 1010 |
| MspA1I | CMGCKG | 1 cut(s) | 257 |
| MspCI | CTTAAG | 1 cut(s) | 809 |
| MspI | CCGG | 3 cut(s) | 368, 434, 999 |
| MspR9I | CCNGG | 3 cut(s) | 20, 369, 548 |
| MunI | CAATTG | 1 cut(s) | 621 |
| MvaI | CCWGG | 2 cut(s) | 20, 548 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 233, 659, 688 |
| NciI | CCSGG | 1 cut(s) | 369 |
| NdeI | CATATG | 1 cut(s) | 907 |
| NdeII | GATC | 3 cut(s) | 430, 585, 790 |
| NheI | GCTAGC | 1 cut(s) | 260 |
| NlaIII | CATG | 5 cut(s) | 62, 537, 640, 725, 1043 |
| NlaIV | GGNNCC | 1 cut(s) | 320 |
| NsiI | ATGCAT | 1 cut(s) | 346 |
| NspI | RCATGY | 2 cut(s) | 537, 1043 |
| NspV | TTCGAA | 1 cut(s) | 302 |
| PaeI | GCATGC | 1 cut(s) | 1043 |
| PciI | ACATGT | 1 cut(s) | 533 |
| PciSI | GCTCTTC | 1 cut(s) | 14 |
| PfeI | GAWTC | 5 cut(s) | 245, 304, 404, 551, 675 |
| PkrI | GCNGC | 4 cut(s) | 6, 256, 259, 1006 |
| PleI | GAGTC | 2 cut(s) | 203, 780 |
| PpsI | GAGTC | 2 cut(s) | 203, 780 |
| PpuMI | RGGWCCY | 1 cut(s) | 16 |
| PscI | ACATGT | 1 cut(s) | 533 |
| Psp5II | RGGWCCY | 1 cut(s) | 16 |
| Psp6I | CCWGG | 2 cut(s) | 18, 546 |
| PspFI | CCCAGC | 1 cut(s) | 294 |
| PspGI | CCWGG | 2 cut(s) | 18, 546 |
| PspN4I | GGNNCC | 1 cut(s) | 320 |
| PspPI | GGNCC | 3 cut(s) | 16, 911, 1031 |
| PspPPI | RGGWCCY | 1 cut(s) | 16 |
| PstI | CTGCAG | 1 cut(s) | 256 |
| PvuII | CAGCTG | 1 cut(s) | 257 |
| RsaI | GTAC | 1 cut(s) | 644 |
| RsaNI | GTAC | 1 cut(s) | 643 |
| SapI | GCTCTTC | 1 cut(s) | 14 |
| SaqAI | TTAA | 2 cut(s) | 810, 1010 |
| SatI | GCNGC | 4 cut(s) | 5, 255, 258, 1005 |
| Sau3AI | GATC | 3 cut(s) | 430, 585, 790 |
| Sau96I | GGNCC | 3 cut(s) | 16, 911, 1031 |
| SchI | GAGTC | 2 cut(s) | 204, 781 |
| ScrFI | CCNGG | 3 cut(s) | 20, 369, 548 |
| SfaNI | GCATC | 3 cut(s) | 52, 353, 427 |
| SfcI | CTRYAG | 5 cut(s) | 31, 189, 231, 252, 710 |
| SfuI | TTCGAA | 1 cut(s) | 302 |
| SinI | GGWCC | 2 cut(s) | 16, 911 |
| SmlI | CTYRAG | 2 cut(s) | 613, 809 |
| SmoI | CTYRAG | 2 cut(s) | 613, 809 |
| SphI | GCATGC | 1 cut(s) | 1043 |
| Sse9I | AATT | 4 cut(s) | 133, 476, 621, 779 |
| SsiI | CCGC | 3 cut(s) | 419, 512, 707 |
| SspI | AATATT | 1 cut(s) | 398 |
| SspMI | CTAG | 2 cut(s) | 96, 261 |
| StyD4I | CCNGG | 3 cut(s) | 18, 367, 546 |
| StyI | CCWWGG | 2 cut(s) | 120, 657 |
| TaaI | ACNGT | 2 cut(s) | 32, 718 |
| TaiI | ACGT | 1 cut(s) | 146 |
| TaqI | TCGA | 6 cut(s) | 82, 157, 302, 516, 554, 893 |
| TasI | AATT | 4 cut(s) | 133, 476, 621, 779 |
| TatI | WGTACW | 1 cut(s) | 642 |
| TfiI | GAWTC | 5 cut(s) | 245, 304, 404, 551, 675 |
| Tru1I | TTAA | 2 cut(s) | 810, 1010 |
| Tru9I | TTAA | 2 cut(s) | 810, 1010 |
| TscAI | CASTG | 5 cut(s) | 214, 359, 421, 1041, 1050 |
| TseI | GCWGC | 4 cut(s) | 4, 254, 257, 1004 |
| TspDTI | ATGAA | 3 cut(s) | 417, 596, 710 |
| TspGWI | ACGGA | 1 cut(s) | 234 |
| TspRI | CASTG | 5 cut(s) | 214, 359, 421, 1041, 1050 |
| Vha464I | CTTAAG | 1 cut(s) | 809 |
| VpaK11BI | GGWCC | 2 cut(s) | 16, 911 |
| XapI | RAATTY | 2 cut(s) | 133, 476 |
| XceI | RCATGY | 2 cut(s) | 537, 1043 |
| XspI | CTAG | 2 cut(s) | 96, 261 |
| ZraI | GACGTC | 1 cut(s) | 144 |
| Zsp2I | ATGCAT | 1 cut(s) | 346 |