Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 61 | 9.2e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 203 |
| AflIII | ACRYGT | 1 cut(s) | 124 |
| AluBI | AGCT | 4 cut(s) | 44, 173, 236, 248 |
| AluI | AGCT | 4 cut(s) | 44, 173, 236, 248 |
| Alw26I | GTCTC | 3 cut(s) | 2, 43, 101 |
| AoxI | GGCC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 2 cut(s) | 100, 245 |
| ApoI | RAATTY | 1 cut(s) | 203 |
| AspS9I | GGNCC | 1 cut(s) | 160 |
| AsuNHI | GCTAGC | 1 cut(s) | 169 |
| BbvI | GCAGC | 2 cut(s) | 87, 257 |
| BccI | CCATC | 1 cut(s) | 171 |
| BcoDI | GTCTC | 3 cut(s) | 2, 43, 101 |
| BfaI | CTAG | 1 cut(s) | 170 |
| BisI | GCNGC | 2 cut(s) | 101, 246 |
| BlsI | GCNGC | 2 cut(s) | 102, 247 |
| BmgT120I | GGNCC | 1 cut(s) | 160 |
| BmsI | GCATC | 2 cut(s) | 4, 40 |
| BmtI | GCTAGC | 1 cut(s) | 173 |
| BpmI | CTGGAG | 2 cut(s) | 26, 125 |
| Bse3DI | GCAATG | 2 cut(s) | 24, 65 |
| BseMI | GCAATG | 2 cut(s) | 24, 65 |
| BseMII | CTCAG | 2 cut(s) | 54, 125 |
| BseXI | GCAGC | 2 cut(s) | 87, 257 |
| BshFI | GGCC | 1 cut(s) | 161 |
| BslFI | GGGAC | 1 cut(s) | 203 |
| BsmAI | GTCTC | 3 cut(s) | 2, 43, 101 |
| BsmFI | GGGAC | 1 cut(s) | 203 |
| BsnI | GGCC | 1 cut(s) | 161 |
| BspANI | GGCC | 1 cut(s) | 161 |
| BspCNI | CTCAG | 2 cut(s) | 53, 124 |
| BspOI | GCTAGC | 1 cut(s) | 173 |
| BsrDI | GCAATG | 2 cut(s) | 24, 65 |
| BstC8I | GCNNGC | 2 cut(s) | 171, 175 |
| BstDEI | CTNAG | 2 cut(s) | 40, 111 |
| BstMAI | GTCTC | 3 cut(s) | 2, 43, 101 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 50, 179, 242 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstV1I | GCAGC | 2 cut(s) | 87, 257 |
| BsuRI | GGCC | 1 cut(s) | 161 |
| Cac8I | GCNNGC | 2 cut(s) | 171, 175 |
| Cfr13I | GGNCC | 1 cut(s) | 160 |
| CseI | GACGC | 1 cut(s) | 20 |
| CviAII | CATG | 3 cut(s) | 125, 146, 179 |
| CviJI | RGCY | 5 cut(s) | 44, 161, 173, 236, 248 |
| CviKI_1 | RGCY | 5 cut(s) | 44, 161, 173, 236, 248 |
| DdeI | CTNAG | 2 cut(s) | 40, 111 |
| FaeI | CATG | 3 cut(s) | 128, 149, 182 |
| FaiI | YATR | 8 cut(s) | 48, 82, 84, 126, 137, 147, 155, 180 |
| FaqI | GGGAC | 1 cut(s) | 203 |
| FatI | CATG | 3 cut(s) | 124, 145, 178 |
| Fnu4HI | GCNGC | 2 cut(s) | 101, 246 |
| Fsp4HI | GCNGC | 2 cut(s) | 101, 246 |
| FspBI | CTAG | 1 cut(s) | 170 |
| GluI | GCNGC | 2 cut(s) | 101, 246 |
| GsuI | CTGGAG | 2 cut(s) | 26, 125 |
| HaeIII | GGCC | 1 cut(s) | 161 |
| HgaI | GACGC | 1 cut(s) | 20 |
| Hin1II | CATG | 3 cut(s) | 128, 149, 182 |
| HinfI | GANTC | 2 cut(s) | 109, 130 |
| Hpy188I | TCNGA | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 2 cut(s) | 17, 245 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 50, 179, 242 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 111 |
| Hsp92II | CATG | 3 cut(s) | 128, 149, 182 |
| LpnPI | CCDG | 1 cut(s) | 89 |
| Lsp1109I | GCAGC | 2 cut(s) | 87, 257 |
| LweI | GCATC | 2 cut(s) | 4, 40 |
| MaeI | CTAG | 1 cut(s) | 170 |
| MaeIII | GTNAC | 1 cut(s) | 131 |
| MboII | GAAGA | 1 cut(s) | 98 |
| MluCI | AATT | 2 cut(s) | 203, 240 |
| MlyI | GAGTC | 2 cut(s) | 103, 139 |
| MnlI | CCTC | 1 cut(s) | 16 |
| MseI | TTAA | 1 cut(s) | 57 |
| MspA1I | CMGCKG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 50, 179, 242 |
| NheI | GCTAGC | 1 cut(s) | 169 |
| NlaIII | CATG | 3 cut(s) | 128, 149, 182 |
| NmuCI | GTSAC | 1 cut(s) | 131 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PciI | ACATGT | 1 cut(s) | 124 |
| PkrI | GCNGC | 2 cut(s) | 102, 247 |
| PleI | GAGTC | 2 cut(s) | 103, 138 |
| PpsI | GAGTC | 2 cut(s) | 103, 138 |
| PscI | ACATGT | 1 cut(s) | 124 |
| PspPI | GGNCC | 1 cut(s) | 160 |
| PvuII | CAGCTG | 1 cut(s) | 248 |
| SaqAI | TTAA | 1 cut(s) | 57 |
| SatI | GCNGC | 2 cut(s) | 101, 246 |
| Sau96I | GGNCC | 1 cut(s) | 160 |
| SchI | GAGTC | 2 cut(s) | 103, 139 |
| SetI | ASST | 7 cut(s) | 27, 46, 98, 142, 175, 238, 250 |
| SfaNI | GCATC | 2 cut(s) | 4, 40 |
| Sse9I | AATT | 2 cut(s) | 203, 240 |
| SspMI | CTAG | 1 cut(s) | 170 |
| TasI | AATT | 2 cut(s) | 203, 240 |
| Tru1I | TTAA | 1 cut(s) | 57 |
| Tru9I | TTAA | 1 cut(s) | 57 |
| TseFI | GTSAC | 1 cut(s) | 131 |
| TseI | GCWGC | 2 cut(s) | 100, 245 |
| Tsp45I | GTSAC | 1 cut(s) | 131 |
| TspDTI | ATGAA | 2 cut(s) | 99, 216 |
| XapI | RAATTY | 1 cut(s) | 203 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XspI | CTAG | 1 cut(s) | 170 |