Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 171 |
| AccI | GTMKAC | 1 cut(s) | 238 |
| AciI | CCGC | 6 cut(s) | 153, 402, 419, 477, 602, 790 |
| AclWI | GGATC | 2 cut(s) | 71, 115 |
| AcuI | CTGAAG | 1 cut(s) | 259 |
| AfaI | GTAC | 1 cut(s) | 769 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 316, 706, 740 |
| AflIII | ACRYGT | 1 cut(s) | 535 |
| AgsI | TTSAA | 1 cut(s) | 473 |
| AjiI | CACGTC | 1 cut(s) | 112 |
| AjnI | CCWGG | 2 cut(s) | 384, 797 |
| AleI | CACNNNNGTG | 1 cut(s) | 430 |
| AluBI | AGCT | 8 cut(s) | 36, 281, 287, 351, 371, 461, 639, 723 |
| AluI | AGCT | 8 cut(s) | 36, 281, 287, 351, 371, 461, 639, 723 |
| AlwI | GGATC | 2 cut(s) | 71, 115 |
| AoxI | GGCC | 2 cut(s) | 219, 697 |
| AspLEI | GCGC | 1 cut(s) | 821 |
| AspS9I | GGNCC | 4 cut(s) | 388, 404, 435, 698 |
| AsuC2I | CCSGG | 1 cut(s) | 450 |
| AsuHPI | GGTGA | 1 cut(s) | 568 |
| AvaII | GGWCC | 3 cut(s) | 388, 404, 435 |
| BanI | GGYRCC | 1 cut(s) | 171 |
| BauI | CACGAG | 2 cut(s) | 31, 582 |
| BbsI | GAAGAC | 2 cut(s) | 134, 717 |
| BccI | CCATC | 1 cut(s) | 311 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 557, 591 |
| BciT130I | CCWGG | 2 cut(s) | 386, 799 |
| BcnI | CCSGG | 1 cut(s) | 450 |
| BfaI | CTAG | 2 cut(s) | 348, 886 |
| BfmI | CTRYAG | 3 cut(s) | 314, 678, 702 |
| BlpI | GCTNAGC | 1 cut(s) | 793 |
| Bme1390I | CCNGG | 3 cut(s) | 386, 450, 799 |
| Bme18I | GGWCC | 3 cut(s) | 388, 404, 435 |
| BmgBI | CACGTC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 4 cut(s) | 388, 404, 435, 698 |
| BmiI | GGNNCC | 3 cut(s) | 173, 732, 843 |
| BmrFI | CCNGG | 3 cut(s) | 386, 450, 799 |
| BpiI | GAAGAC | 2 cut(s) | 134, 717 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 628, 660 |
| BpmI | CTGGAG | 2 cut(s) | 303, 762 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 793 |
| BpuMI | CCSGG | 1 cut(s) | 450 |
| BsaAI | YACGTR | 1 cut(s) | 242 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 316, 706, 740 |
| Bse1I | ACTGG | 2 cut(s) | 297, 745 |
| BseBI | CCWGG | 2 cut(s) | 386, 799 |
| BseGI | GGATG | 2 cut(s) | 303, 759 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 316, 706, 740 |
| BseMII | CTCAG | 2 cut(s) | 128, 495 |
| BseNI | ACTGG | 2 cut(s) | 297, 745 |
| BseRI | GAGGAG | 2 cut(s) | 250, 343 |
| BseYI | CCCAGC | 2 cut(s) | 358, 453 |
| BsgI | GTGCAG | 1 cut(s) | 612 |
| BshFI | GGCC | 2 cut(s) | 221, 699 |
| BshNI | GGYRCC | 1 cut(s) | 171 |
| BsiSI | CCGG | 1 cut(s) | 450 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 316, 706, 740 |
| BsmI | GAATGC | 1 cut(s) | 532 |
| BsnI | GGCC | 2 cut(s) | 221, 699 |
| Bsp143I | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 793 |
| BspACI | CCGC | 6 cut(s) | 153, 402, 419, 477, 602, 790 |
| BspANI | GGCC | 2 cut(s) | 221, 699 |
| BspCNI | CTCAG | 2 cut(s) | 129, 496 |
| BspLI | GGNNCC | 3 cut(s) | 173, 732, 843 |
| BspPI | GGATC | 2 cut(s) | 71, 115 |
| BspT107I | GGYRCC | 1 cut(s) | 171 |
| BsrI | ACTGG | 2 cut(s) | 297, 745 |
| BssMI | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| BssNAI | GTATAC | 1 cut(s) | 239 |
| BssSI | CACGAG | 2 cut(s) | 31, 582 |
| Bst1107I | GTATAC | 1 cut(s) | 239 |
| Bst2BI | CACGAG | 2 cut(s) | 31, 582 |
| Bst2UI | CCWGG | 2 cut(s) | 386, 799 |
| Bst4CI | ACNGT | 1 cut(s) | 781 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 527 |
| BstBAI | YACGTR | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 2 cut(s) | 725, 729 |
| BstDEI | CTNAG | 4 cut(s) | 137, 504, 621, 793 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 314 |
| BstF5I | GGATG | 2 cut(s) | 303, 759 |
| BstHHI | GCGC | 1 cut(s) | 821 |
| BstKTI | GATC | 5 cut(s) | 66, 123, 685, 696, 738 |
| BstMBI | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 518, 527, 599 |
| BstNI | CCWGG | 2 cut(s) | 386, 799 |
| BstNSI | RCATGY | 2 cut(s) | 419, 539 |
| BstSCI | CCNGG | 3 cut(s) | 384, 448, 797 |
| BstSFI | CTRYAG | 3 cut(s) | 314, 678, 702 |
| BstV2I | GAAGAC | 2 cut(s) | 134, 717 |
| BstX2I | RGATCY | 1 cut(s) | 63 |
| BstYI | RGATCY | 1 cut(s) | 63 |
| BstZ17I | GTATAC | 1 cut(s) | 239 |
| BsuRI | GGCC | 2 cut(s) | 221, 699 |
| BtrI | CACGTC | 1 cut(s) | 112 |
| BtsCI | GGATG | 2 cut(s) | 303, 759 |
| BtsI | GCAGTG | 1 cut(s) | 246 |
| BtsIMutI | CAGTG | 3 cut(s) | 134, 246, 738 |
| Cac8I | GCNNGC | 2 cut(s) | 725, 729 |
| CfoI | GCGC | 1 cut(s) | 821 |
| Cfr13I | GGNCC | 4 cut(s) | 388, 404, 435, 698 |
| CseI | GACGC | 1 cut(s) | 370 |
| Csp6I | GTAC | 1 cut(s) | 768 |
| CviAII | CATG | 6 cut(s) | 233, 335, 416, 497, 536, 598 |
| CviQI | GTAC | 1 cut(s) | 768 |
| DdeI | CTNAG | 4 cut(s) | 137, 504, 621, 793 |
| DpnI | GATC | 5 cut(s) | 65, 122, 684, 695, 737 |
| DpnII | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| Eco32I | GATATC | 2 cut(s) | 547, 826 |
| Eco47I | GGWCC | 3 cut(s) | 388, 404, 435 |
| Eco57I | CTGAAG | 1 cut(s) | 259 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 314 |
| EcoRII | CCWGG | 2 cut(s) | 384, 797 |
| EcoRV | GATATC | 2 cut(s) | 547, 826 |
| EcoT22I | ATGCAT | 1 cut(s) | 532 |
| FaeI | CATG | 6 cut(s) | 236, 338, 419, 500, 539, 601 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FatI | CATG | 6 cut(s) | 232, 334, 415, 496, 535, 597 |
| FblI | GTMKAC | 1 cut(s) | 238 |
| FokI | GGATG | 2 cut(s) | 290, 746 |
| FspBI | CTAG | 2 cut(s) | 348, 886 |
| GlaI | GCGC | 1 cut(s) | 820 |
| GsaI | CCCAGC | 2 cut(s) | 362, 457 |
| GsuI | CTGGAG | 2 cut(s) | 303, 762 |
| HaeIII | GGCC | 2 cut(s) | 221, 699 |
| HapII | CCGG | 1 cut(s) | 450 |
| HgaI | GACGC | 1 cut(s) | 370 |
| HhaI | GCGC | 1 cut(s) | 821 |
| Hin1II | CATG | 6 cut(s) | 236, 338, 419, 500, 539, 601 |
| Hin6I | GCGC | 1 cut(s) | 819 |
| HinP1I | GCGC | 1 cut(s) | 819 |
| HincII | GTYRAC | 1 cut(s) | 787 |
| HindII | GTYRAC | 1 cut(s) | 787 |
| HindIII | AAGCTT | 1 cut(s) | 721 |
| HinfI | GANTC | 4 cut(s) | 19, 84, 139, 500 |
| HpaII | CCGG | 1 cut(s) | 450 |
| HphI | GGTGA | 1 cut(s) | 568 |
| Hpy166II | GTNNAC | 5 cut(s) | 30, 239, 345, 435, 787 |
| Hpy188I | TCNGA | 4 cut(s) | 278, 392, 505, 735 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 107, 584 |
| Hpy8I | GTNNAC | 5 cut(s) | 30, 239, 345, 435, 787 |
| HpyAV | CCTTC | 4 cut(s) | 107, 320, 467, 581 |
| HpyCH4III | ACNGT | 1 cut(s) | 781 |
| HpyCH4IV | ACGT | 3 cut(s) | 111, 241, 467 |
| HpyCH4V | TGCA | 3 cut(s) | 209, 530, 593 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 518, 527, 599 |
| HpyF3I | CTNAG | 4 cut(s) | 137, 504, 621, 793 |
| HpySE526I | ACGT | 3 cut(s) | 111, 241, 467 |
| Hsp92II | CATG | 6 cut(s) | 236, 338, 419, 500, 539, 601 |
| HspAI | GCGC | 1 cut(s) | 819 |
| Kzo9I | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| LmnI | GCTCC | 3 cut(s) | 284, 356, 736 |
| MaeI | CTAG | 2 cut(s) | 348, 886 |
| MaeII | ACGT | 3 cut(s) | 111, 241, 467 |
| MaeIII | GTNAC | 3 cut(s) | 655, 748, 881 |
| MalI | GATC | 5 cut(s) | 65, 122, 684, 695, 737 |
| MboI | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| MboII | GAAGA | 3 cut(s) | 79, 134, 722 |
| MfeI | CAATTG | 1 cut(s) | 573 |
| MflI | RGATCY | 1 cut(s) | 63 |
| MluCI | AATT | 3 cut(s) | 540, 573, 877 |
| MlyI | GAGTC | 2 cut(s) | 148, 494 |
| MmeI | TCCRAC | 1 cut(s) | 415 |
| Mph1103I | ATGCAT | 1 cut(s) | 532 |
| MseI | TTAA | 3 cut(s) | 201, 633, 665 |
| MslI | CAYNNNNRTG | 2 cut(s) | 430, 602 |
| MspI | CCGG | 1 cut(s) | 450 |
| MspR9I | CCNGG | 3 cut(s) | 386, 450, 799 |
| MunI | CAATTG | 1 cut(s) | 573 |
| Mva1269I | GAATGC | 1 cut(s) | 532 |
| MvaI | CCWGG | 2 cut(s) | 386, 799 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 518, 527, 599 |
| NciI | CCSGG | 1 cut(s) | 450 |
| NdeII | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| NlaIII | CATG | 6 cut(s) | 236, 338, 419, 500, 539, 601 |
| NlaIV | GGNNCC | 3 cut(s) | 173, 732, 843 |
| NsiI | ATGCAT | 1 cut(s) | 532 |
| NspI | RCATGY | 2 cut(s) | 419, 539 |
| OliI | CACNNNNGTG | 1 cut(s) | 430 |
| PciI | ACATGT | 1 cut(s) | 535 |
| PctI | GAATGC | 1 cut(s) | 532 |
| PfeI | GAWTC | 2 cut(s) | 19, 84 |
| PleI | GAGTC | 2 cut(s) | 147, 494 |
| PpsI | GAGTC | 2 cut(s) | 147, 494 |
| Ppu21I | YACGTR | 1 cut(s) | 242 |
| PscI | ACATGT | 1 cut(s) | 535 |
| Psp6I | CCWGG | 2 cut(s) | 384, 797 |
| PspFI | CCCAGC | 2 cut(s) | 358, 453 |
| PspGI | CCWGG | 2 cut(s) | 384, 797 |
| PspN4I | GGNNCC | 3 cut(s) | 173, 732, 843 |
| PspPI | GGNCC | 4 cut(s) | 388, 404, 435, 698 |
| PsrI | GAACNNNNNNTAC | 3 cut(s) | 29, 222, 254 |
| PsuI | RGATCY | 1 cut(s) | 63 |
| RsaI | GTAC | 1 cut(s) | 769 |
| RsaNI | GTAC | 1 cut(s) | 768 |
| RseI | CAYNNNNRTG | 2 cut(s) | 430, 602 |
| SaqAI | TTAA | 3 cut(s) | 201, 633, 665 |
| Sau3AI | GATC | 5 cut(s) | 63, 120, 682, 693, 735 |
| Sau96I | GGNCC | 4 cut(s) | 388, 404, 435, 698 |
| SchI | GAGTC | 2 cut(s) | 148, 494 |
| ScrFI | CCNGG | 3 cut(s) | 386, 450, 799 |
| SfcI | CTRYAG | 3 cut(s) | 314, 678, 702 |
| SinI | GGWCC | 3 cut(s) | 388, 404, 435 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 430, 602 |
| Sse9I | AATT | 3 cut(s) | 540, 573, 877 |
| SsiI | CCGC | 6 cut(s) | 153, 402, 419, 477, 602, 790 |
| SspI | AATATT | 1 cut(s) | 814 |
| SspMI | CTAG | 2 cut(s) | 348, 886 |
| StyD4I | CCNGG | 3 cut(s) | 384, 448, 797 |
| TaaI | ACNGT | 1 cut(s) | 781 |
| TaiI | ACGT | 3 cut(s) | 114, 244, 470 |
| TaqI | TCGA | 3 cut(s) | 42, 377, 567 |
| TasI | AATT | 3 cut(s) | 540, 573, 877 |
| TatI | WGTACW | 1 cut(s) | 767 |
| TfiI | GAWTC | 2 cut(s) | 19, 84 |
| Tru1I | TTAA | 3 cut(s) | 201, 633, 665 |
| Tru9I | TTAA | 3 cut(s) | 201, 633, 665 |
| TscAI | CASTG | 3 cut(s) | 141, 253, 745 |
| TspGWI | ACGGA | 2 cut(s) | 113, 752 |
| TspRI | CASTG | 3 cut(s) | 141, 253, 745 |
| VpaK11BI | GGWCC | 3 cut(s) | 388, 404, 435 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 314 |
| XceI | RCATGY | 2 cut(s) | 419, 539 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 724 |
| XmiI | GTMKAC | 1 cut(s) | 238 |
| XspI | CTAG | 2 cut(s) | 348, 886 |
| Zsp2I | ATGCAT | 1 cut(s) | 532 |