Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 122 | 9e-22 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 175 |
| AcoI | YGGCCR | 1 cut(s) | 87 |
| AfaI | GTAC | 4 cut(s) | 54, 216, 307, 442 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 175 |
| AgsI | TTSAA | 1 cut(s) | 63 |
| AjnI | CCWGG | 2 cut(s) | 168, 298 |
| AluBI | AGCT | 7 cut(s) | 11, 137, 149, 157, 221, 253, 295 |
| AluI | AGCT | 7 cut(s) | 11, 137, 149, 157, 221, 253, 295 |
| AoxI | GGCC | 1 cut(s) | 87 |
| ApeKI | GCWGC | 2 cut(s) | 295, 341 |
| AspS9I | GGNCC | 1 cut(s) | 179 |
| AvaII | GGWCC | 1 cut(s) | 179 |
| BalI | TGGCCA | 1 cut(s) | 89 |
| BbvI | GCAGC | 2 cut(s) | 282, 328 |
| BccI | CCATC | 1 cut(s) | 79 |
| BciT130I | CCWGG | 2 cut(s) | 170, 300 |
| BclI | TGATCA | 1 cut(s) | 100 |
| BfaI | CTAG | 4 cut(s) | 134, 191, 416, 432 |
| BisI | GCNGC | 2 cut(s) | 296, 342 |
| BlsI | GCNGC | 2 cut(s) | 297, 343 |
| BmcAI | AGTACT | 1 cut(s) | 307 |
| Bme1390I | CCNGG | 2 cut(s) | 170, 300 |
| Bme18I | GGWCC | 1 cut(s) | 179 |
| BmgT120I | GGNCC | 1 cut(s) | 179 |
| BmiI | GGNNCC | 1 cut(s) | 180 |
| BmrFI | CCNGG | 2 cut(s) | 170, 300 |
| BpuEI | CTTGAG | 1 cut(s) | 105 |
| BsaAI | YACGTR | 1 cut(s) | 56 |
| BsaJI | CCNNGG | 1 cut(s) | 169 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 175 |
| Bse1I | ACTGG | 1 cut(s) | 182 |
| Bse3DI | GCAATG | 1 cut(s) | 391 |
| BseBI | CCWGG | 2 cut(s) | 170, 300 |
| BseDI | CCNNGG | 1 cut(s) | 169 |
| BseGI | GGATG | 3 cut(s) | 10, 90, 277 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BseMI | GCAATG | 1 cut(s) | 391 |
| BseMII | CTCAG | 1 cut(s) | 282 |
| BseNI | ACTGG | 1 cut(s) | 182 |
| BseRI | GAGGAG | 1 cut(s) | 434 |
| BseXI | GCAGC | 2 cut(s) | 282, 328 |
| BsgI | GTGCAG | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BsmI | GAATGC | 1 cut(s) | 226 |
| BsnI | GGCC | 1 cut(s) | 89 |
| Bsp143I | GATC | 1 cut(s) | 100 |
| BspANI | GGCC | 1 cut(s) | 89 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 180 |
| BsrDI | GCAATG | 1 cut(s) | 391 |
| BsrI | ACTGG | 1 cut(s) | 182 |
| BssECI | CCNNGG | 1 cut(s) | 169 |
| BssMI | GATC | 1 cut(s) | 100 |
| Bst2UI | CCWGG | 2 cut(s) | 170, 300 |
| BstBAI | YACGTR | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 2 cut(s) | 151, 155 |
| BstDEI | CTNAG | 1 cut(s) | 291 |
| BstF5I | GGATG | 3 cut(s) | 10, 90, 277 |
| BstKTI | GATC | 1 cut(s) | 103 |
| BstMBI | GATC | 1 cut(s) | 100 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNI | CCWGG | 2 cut(s) | 170, 300 |
| BstSCI | CCNGG | 2 cut(s) | 168, 298 |
| BstV1I | GCAGC | 2 cut(s) | 282, 328 |
| BsuRI | GGCC | 1 cut(s) | 89 |
| BtsCI | GGATG | 3 cut(s) | 10, 90, 277 |
| Cac8I | GCNNGC | 2 cut(s) | 151, 155 |
| Cfr13I | GGNCC | 1 cut(s) | 179 |
| Csp6I | GTAC | 4 cut(s) | 53, 215, 306, 441 |
| CviJI | RGCY | 9 cut(s) | 11, 89, 137, 149, 157, 221, 253, 281, 295 |
| CviKI_1 | RGCY | 9 cut(s) | 11, 89, 137, 149, 157, 221, 253, 281, 295 |
| CviQI | GTAC | 4 cut(s) | 53, 215, 306, 441 |
| DdeI | CTNAG | 1 cut(s) | 291 |
| DpnI | GATC | 1 cut(s) | 102 |
| DpnII | GATC | 1 cut(s) | 100 |
| EaeI | YGGCCR | 1 cut(s) | 87 |
| Eco47I | GGWCC | 1 cut(s) | 179 |
| EcoRII | CCWGG | 2 cut(s) | 168, 298 |
| EcoT22I | ATGCAT | 1 cut(s) | 228 |
| FaiI | YATR | 4 cut(s) | 20, 224, 267, 370 |
| FbaI | TGATCA | 1 cut(s) | 100 |
| Fnu4HI | GCNGC | 2 cut(s) | 296, 342 |
| FokI | GGATG | 3 cut(s) | 17, 97, 284 |
| Fsp4HI | GCNGC | 2 cut(s) | 296, 342 |
| FspBI | CTAG | 4 cut(s) | 134, 191, 416, 432 |
| GluI | GCNGC | 2 cut(s) | 296, 342 |
| HaeIII | GGCC | 1 cut(s) | 89 |
| HinfI | GANTC | 5 cut(s) | 59, 68, 194, 200, 239 |
| Hpy188I | TCNGA | 3 cut(s) | 199, 257, 292 |
| Hpy188III | TCNNGA | 5 cut(s) | 164, 191, 326, 416, 432 |
| HpyAV | CCTTC | 1 cut(s) | 323 |
| HpyCH4IV | ACGT | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 5 cut(s) | 22, 41, 153, 226, 384 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 1 cut(s) | 291 |
| HpySE526I | ACGT | 1 cut(s) | 55 |
| Ksp22I | TGATCA | 1 cut(s) | 100 |
| Kzo9I | GATC | 1 cut(s) | 100 |
| LmnI | GCTCC | 2 cut(s) | 8, 258 |
| Lsp1109I | GCAGC | 2 cut(s) | 282, 328 |
| MaeI | CTAG | 4 cut(s) | 134, 191, 416, 432 |
| MaeII | ACGT | 1 cut(s) | 55 |
| MalI | GATC | 1 cut(s) | 102 |
| MboI | GATC | 1 cut(s) | 100 |
| MlsI | TGGCCA | 1 cut(s) | 89 |
| MluCI | AATT | 1 cut(s) | 45 |
| MluNI | TGGCCA | 1 cut(s) | 89 |
| MlyI | GAGTC | 1 cut(s) | 194 |
| MnlI | CCTC | 4 cut(s) | 121, 262, 412, 417 |
| Mox20I | TGGCCA | 1 cut(s) | 89 |
| Mph1103I | ATGCAT | 1 cut(s) | 228 |
| MscI | TGGCCA | 1 cut(s) | 89 |
| MseI | TTAA | 1 cut(s) | 445 |
| Msp20I | TGGCCA | 1 cut(s) | 89 |
| MspR9I | CCNGG | 2 cut(s) | 170, 300 |
| Mva1269I | GAATGC | 1 cut(s) | 226 |
| MvaI | CCWGG | 2 cut(s) | 170, 300 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NdeII | GATC | 1 cut(s) | 100 |
| NlaIV | GGNNCC | 1 cut(s) | 180 |
| NsiI | ATGCAT | 1 cut(s) | 228 |
| PctI | GAATGC | 1 cut(s) | 226 |
| PfeI | GAWTC | 4 cut(s) | 59, 68, 194, 239 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 175 |
| PkrI | GCNGC | 2 cut(s) | 297, 343 |
| PleI | GAGTC | 1 cut(s) | 194 |
| PpsI | GAGTC | 1 cut(s) | 194 |
| Ppu21I | YACGTR | 1 cut(s) | 56 |
| Psp6I | CCWGG | 2 cut(s) | 168, 298 |
| PspGI | CCWGG | 2 cut(s) | 168, 298 |
| PspN4I | GGNNCC | 1 cut(s) | 180 |
| PspPI | GGNCC | 1 cut(s) | 179 |
| RsaI | GTAC | 4 cut(s) | 54, 216, 307, 442 |
| RsaNI | GTAC | 4 cut(s) | 53, 215, 306, 441 |
| SaqAI | TTAA | 1 cut(s) | 445 |
| SatI | GCNGC | 2 cut(s) | 296, 342 |
| Sau3AI | GATC | 1 cut(s) | 100 |
| Sau96I | GGNCC | 1 cut(s) | 179 |
| ScaI | AGTACT | 1 cut(s) | 307 |
| SchI | GAGTC | 1 cut(s) | 194 |
| ScrFI | CCNGG | 2 cut(s) | 170, 300 |
| SinI | GGWCC | 1 cut(s) | 179 |
| SmlI | CTYRAG | 1 cut(s) | 120 |
| SmoI | CTYRAG | 1 cut(s) | 120 |
| Sse9I | AATT | 1 cut(s) | 45 |
| SspMI | CTAG | 4 cut(s) | 134, 191, 416, 432 |
| StyD4I | CCNGG | 2 cut(s) | 168, 298 |
| TaiI | ACGT | 1 cut(s) | 58 |
| TaqI | TCGA | 1 cut(s) | 325 |
| TasI | AATT | 1 cut(s) | 45 |
| TatI | WGTACW | 3 cut(s) | 214, 305, 440 |
| TfiI | GAWTC | 4 cut(s) | 59, 68, 194, 239 |
| Tru1I | TTAA | 1 cut(s) | 445 |
| Tru9I | TTAA | 1 cut(s) | 445 |
| TseI | GCWGC | 2 cut(s) | 295, 341 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 175 |
| VpaK11BI | GGWCC | 1 cut(s) | 179 |
| XbaI | TCTAGA | 3 cut(s) | 190, 415, 431 |
| XspI | CTAG | 4 cut(s) | 134, 191, 416, 432 |
| ZrmI | AGTACT | 1 cut(s) | 307 |
| Zsp2I | ATGCAT | 1 cut(s) | 228 |