Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Thi4 | PF01946 | 78 - 311 | 2.9e-113 | Thi4 family |
| FAD_binding_2 | PF00890 | 96 - 132 | 9.9e-07 | FAD binding domain |
| DAO | PF01266 | 96 - 143 | 2.9e-08 | FAD dependent oxidoreductase |
| Pyr_redox_2 | PF07992 | 96 - 137 | 8e-06 | Pyridine nucleotide-disulphide oxidoreductase |
| NAD_binding_8 | PF13450 | 99 - 134 | 6.5e-07 | NAD(P)-binding Rossmann-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 293, 503 |
| AatII | GACGTC | 1 cut(s) | 291 |
| Acc36I | ACCTGC | 1 cut(s) | 349 |
| AccB1I | GGYRCC | 1 cut(s) | 167 |
| AccII | CGCG | 2 cut(s) | 105, 401 |
| AclI | AACGTT | 1 cut(s) | 693 |
| AclWI | GGATC | 2 cut(s) | 916, 1018 |
| AcoI | YGGCCR | 2 cut(s) | 136, 412 |
| AcuI | CTGAAG | 1 cut(s) | 849 |
| AcyI | GRCGYC | 3 cut(s) | 168, 288, 834 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 395, 920, 932 |
| AgsI | TTSAA | 3 cut(s) | 202, 580, 979 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 673 |
| AjnI | CCWGG | 5 cut(s) | 233, 245, 796, 851, 865 |
| AleI | CACNNNNGTG | 2 cut(s) | 676, 755 |
| Alw21I | GWGCWC | 1 cut(s) | 339 |
| Alw26I | GTCTC | 3 cut(s) | 157, 235, 658 |
| AlwI | GGATC | 2 cut(s) | 916, 1018 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1061 |
| AoxI | GGCC | 8 cut(s) | 120, 136, 142, 412, 560, 645, 736, 807 |
| ApeKI | GCWGC | 6 cut(s) | 518, 590, 824, 962, 1049, 1052 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 575 |
| AspLEI | GCGC | 6 cut(s) | 92, 170, 252, 329, 401, 985 |
| AspS9I | GGNCC | 5 cut(s) | 561, 645, 685, 737, 923 |
| AsuC2I | CCSGG | 1 cut(s) | 390 |
| AsuHPI | GGTGA | 3 cut(s) | 262, 520, 628 |
| AvaII | GGWCC | 2 cut(s) | 685, 923 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 273, 306 |
| BalI | TGGCCA | 1 cut(s) | 414 |
| BanI | GGYRCC | 1 cut(s) | 167 |
| BanII | GRGCYC | 1 cut(s) | 339 |
| BbsI | GAAGAC | 1 cut(s) | 837 |
| Bbv12I | GWGCWC | 1 cut(s) | 339 |
| BbvCI | CCTCAGC | 1 cut(s) | 594 |
| BbvI | GCAGC | 6 cut(s) | 505, 602, 836, 974, 1036, 1039 |
| BccI | CCATC | 5 cut(s) | 70, 233, 728, 899, 1001 |
| BceAI | ACGGC | 4 cut(s) | 103, 151, 157, 569 |
| BciT130I | CCWGG | 5 cut(s) | 235, 247, 798, 853, 867 |
| BclI | TGATCA | 2 cut(s) | 267, 603 |
| BcnI | CCSGG | 1 cut(s) | 390 |
| BcoDI | GTCTC | 3 cut(s) | 157, 235, 658 |
| BfaI | CTAG | 1 cut(s) | 986 |
| BfmI | CTRYAG | 1 cut(s) | 1053 |
| BfoI | RGCGCY | 4 cut(s) | 93, 171, 253, 986 |
| BfuAI | ACCTGC | 1 cut(s) | 349 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 393, 971 |
| BlpI | GCTNAGC | 1 cut(s) | 338 |
| Bme1390I | CCNGG | 6 cut(s) | 235, 247, 390, 798, 853, 867 |
| Bme18I | GGWCC | 2 cut(s) | 685, 923 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 673 |
| BmgT120I | GGNCC | 5 cut(s) | 561, 645, 685, 737, 923 |
| BmiI | GGNNCC | 5 cut(s) | 169, 310, 687, 748, 924 |
| BmrFI | CCNGG | 6 cut(s) | 235, 247, 390, 798, 853, 867 |
| BmrI | ACTGGG | 1 cut(s) | 652 |
| BmsI | GCATC | 2 cut(s) | 14, 1035 |
| BmuI | ACTGGG | 1 cut(s) | 652 |
| BpiI | GAAGAC | 1 cut(s) | 837 |
| BpmI | CTGGAG | 2 cut(s) | 38, 217 |
| Bpu10I | CCTNAGC | 1 cut(s) | 594 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 338 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BpuMI | CCSGG | 1 cut(s) | 390 |
| BsaHI | GRCGYC | 3 cut(s) | 168, 288, 834 |
| BsaI | GGTCTC | 1 cut(s) | 658 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 131, 161, 610, 640 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 395, 920, 932 |
| Bse118I | RCCGGY | 2 cut(s) | 164, 752 |
| Bse1I | ACTGG | 2 cut(s) | 647, 886 |
| Bse3DI | GCAATG | 1 cut(s) | 474 |
| BseBI | CCWGG | 5 cut(s) | 235, 247, 798, 853, 867 |
| BseGI | GGATG | 6 cut(s) | 5, 128, 499, 786, 807, 1026 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 395, 920, 932 |
| BseMI | GCAATG | 1 cut(s) | 474 |
| BseMII | CTCAG | 6 cut(s) | 205, 352, 585, 888, 963, 1059 |
| BseNI | ACTGG | 2 cut(s) | 647, 886 |
| BseRI | GAGGAG | 4 cut(s) | 41, 59, 67, 784 |
| BseXI | GCAGC | 6 cut(s) | 505, 602, 836, 974, 1036, 1039 |
| BsgI | GTGCAG | 1 cut(s) | 377 |
| Bsh1236I | CGCG | 2 cut(s) | 105, 401 |
| BshFI | GGCC | 8 cut(s) | 122, 138, 144, 414, 562, 647, 738, 809 |
| BshNI | GGYRCC | 1 cut(s) | 167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 339 |
| BsiSI | CCGG | 4 cut(s) | 165, 315, 390, 753 |
| BslFI | GGGAC | 1 cut(s) | 936 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 395, 920, 932 |
| BsmAI | GTCTC | 3 cut(s) | 157, 235, 658 |
| BsmBI | CGTCTC | 2 cut(s) | 157, 235 |
| BsmFI | GGGAC | 1 cut(s) | 936 |
| BsmI | GAATGC | 1 cut(s) | 826 |
| BsnI | GGCC | 8 cut(s) | 122, 138, 144, 414, 562, 647, 738, 809 |
| Bso31I | GGTCTC | 1 cut(s) | 658 |
| Bsp1286I | GDGCHC | 1 cut(s) | 339 |
| Bsp143I | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 338 |
| Bsp19I | CCATGG | 2 cut(s) | 9, 429 |
| BspANI | GGCC | 8 cut(s) | 122, 138, 144, 414, 562, 647, 738, 809 |
| BspCNI | CTCAG | 6 cut(s) | 204, 351, 586, 889, 962, 1060 |
| BspFNI | CGCG | 2 cut(s) | 105, 401 |
| BspLI | GGNNCC | 5 cut(s) | 169, 310, 687, 748, 924 |
| BspMAI | CTGCAG | 1 cut(s) | 1057 |
| BspMI | ACCTGC | 1 cut(s) | 349 |
| BspPI | GGATC | 2 cut(s) | 916, 1018 |
| BspQI | GCTCTTC | 1 cut(s) | 425 |
| BspT107I | GGYRCC | 1 cut(s) | 167 |
| BspTNI | GGTCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 1 cut(s) | 474 |
| BsrFI | RCCGGY | 2 cut(s) | 164, 752 |
| BsrI | ACTGG | 2 cut(s) | 647, 886 |
| BssAI | RCCGGY | 2 cut(s) | 164, 752 |
| BssMI | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| BssNI | GRCGYC | 3 cut(s) | 168, 288, 834 |
| BssT1I | CCWWGG | 5 cut(s) | 9, 429, 648, 705, 810 |
| Bst2UI | CCWGG | 5 cut(s) | 235, 247, 798, 853, 867 |
| Bst4CI | ACNGT | 1 cut(s) | 675 |
| Bst6I | CTCTTC | 3 cut(s) | 425, 581, 755 |
| BstACI | GRCGYC | 3 cut(s) | 168, 288, 834 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1061 |
| BstC8I | GCNNGC | 6 cut(s) | 103, 166, 307, 416, 548, 794 |
| BstDEI | CTNAG | 7 cut(s) | 191, 338, 594, 897, 949, 1045, 1068 |
| BstDSI | CCRYGG | 4 cut(s) | 9, 85, 139, 429 |
| BstF5I | GGATG | 6 cut(s) | 5, 128, 499, 786, 807, 1026 |
| BstFNI | CGCG | 2 cut(s) | 105, 401 |
| BstH2I | RGCGCY | 4 cut(s) | 93, 171, 253, 986 |
| BstHHI | GCGC | 6 cut(s) | 92, 170, 252, 329, 401, 985 |
| BstKTI | GATC | 9 cut(s) | 190, 216, 270, 606, 911, 948, 1013, 1044, 1074 |
| BstMAI | GTCTC | 3 cut(s) | 157, 235, 658 |
| BstMBI | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 11, 98, 311, 393, 590, 833, 971, 980, 1061 |
| BstNI | CCWGG | 5 cut(s) | 235, 247, 798, 853, 867 |
| BstNSI | RCATGY | 1 cut(s) | 518 |
| BstSCI | CCNGG | 6 cut(s) | 233, 245, 388, 796, 851, 865 |
| BstSFI | CTRYAG | 1 cut(s) | 1053 |
| BstUI | CGCG | 2 cut(s) | 105, 401 |
| BstV1I | GCAGC | 6 cut(s) | 505, 602, 836, 974, 1036, 1039 |
| BstV2I | GAAGAC | 1 cut(s) | 837 |
| BstX2I | RGATCY | 1 cut(s) | 908 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 697, 712 |
| BstYI | RGATCY | 1 cut(s) | 908 |
| BsuRI | GGCC | 8 cut(s) | 122, 138, 144, 414, 562, 647, 738, 809 |
| BtgI | CCRYGG | 4 cut(s) | 9, 85, 139, 429 |
| BtgZI | GCGATG | 1 cut(s) | 18 |
| BtsCI | GGATG | 6 cut(s) | 5, 128, 499, 786, 807, 1026 |
| BveI | ACCTGC | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 6 cut(s) | 103, 166, 307, 416, 548, 794 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1061 |
| CfoI | GCGC | 6 cut(s) | 92, 170, 252, 329, 401, 985 |
| Cfr10I | RCCGGY | 2 cut(s) | 164, 752 |
| Cfr13I | GGNCC | 5 cut(s) | 561, 645, 685, 737, 923 |
| CseI | GACGC | 2 cut(s) | 94, 842 |
| DdeI | CTNAG | 7 cut(s) | 191, 338, 594, 897, 949, 1045, 1068 |
| DinI | GGCGCC | 1 cut(s) | 169 |
| DpnI | GATC | 9 cut(s) | 189, 215, 269, 605, 910, 947, 1012, 1043, 1073 |
| DpnII | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 293, 503 |
| DriI | GACNNNNNGTC | 1 cut(s) | 673 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 293, 503 |
| EaeI | YGGCCR | 2 cut(s) | 136, 412 |
| Eam1104I | CTCTTC | 3 cut(s) | 425, 581, 755 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 673 |
| EarI | CTCTTC | 3 cut(s) | 425, 581, 755 |
| EciI | GGCGGA | 5 cut(s) | 31, 151, 301, 415, 506 |
| Ecl136II | GAGCTC | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 5 cut(s) | 9, 429, 648, 705, 810 |
| Eco147I | AGGCCT | 1 cut(s) | 809 |
| Eco24I | GRGCYC | 1 cut(s) | 339 |
| Eco31I | GGTCTC | 1 cut(s) | 658 |
| Eco47I | GGWCC | 2 cut(s) | 685, 923 |
| Eco53kI | GAGCTC | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 1 cut(s) | 849 |
| EcoICRI | GAGCTC | 1 cut(s) | 337 |
| EcoO109I | RGGNCCY | 1 cut(s) | 923 |
| EcoRII | CCWGG | 5 cut(s) | 233, 245, 796, 851, 865 |
| EcoT14I | CCWWGG | 5 cut(s) | 9, 429, 648, 705, 810 |
| EcoT38I | GRGCYC | 1 cut(s) | 339 |
| EgeI | GGCGCC | 1 cut(s) | 169 |
| EheI | GGCGCC | 1 cut(s) | 169 |
| ErhI | CCWWGG | 5 cut(s) | 9, 429, 648, 705, 810 |
| Esp3I | CGTCTC | 2 cut(s) | 157, 235 |
| FaqI | GGGAC | 1 cut(s) | 936 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FauNDI | CATATG | 1 cut(s) | 1015 |
| FbaI | TGATCA | 2 cut(s) | 267, 603 |
| FokI | GGATG | 5 cut(s) | 115, 506, 793, 814, 1013 |
| FriOI | GRGCYC | 1 cut(s) | 339 |
| FspBI | CTAG | 1 cut(s) | 986 |
| GlaI | GCGC | 6 cut(s) | 91, 169, 251, 328, 400, 984 |
| GsuI | CTGGAG | 2 cut(s) | 38, 217 |
| HaeII | RGCGCY | 4 cut(s) | 93, 171, 253, 986 |
| HaeIII | GGCC | 8 cut(s) | 122, 138, 144, 414, 562, 647, 738, 809 |
| HapII | CCGG | 4 cut(s) | 165, 315, 390, 753 |
| HgaI | GACGC | 2 cut(s) | 94, 842 |
| HhaI | GCGC | 6 cut(s) | 92, 170, 252, 329, 401, 985 |
| Hin1I | GRCGYC | 3 cut(s) | 168, 288, 834 |
| Hin6I | GCGC | 6 cut(s) | 90, 168, 250, 327, 399, 983 |
| HinP1I | GCGC | 6 cut(s) | 90, 168, 250, 327, 399, 983 |
| HinfI | GANTC | 4 cut(s) | 74, 221, 318, 1058 |
| HpaII | CCGG | 4 cut(s) | 165, 315, 390, 753 |
| HphI | GGTGA | 3 cut(s) | 262, 520, 628 |
| Hpy188I | TCNGA | 1 cut(s) | 1069 |
| Hpy188III | TCNNGA | 3 cut(s) | 55, 731, 1004 |
| Hpy99I | CGWCG | 7 cut(s) | 101, 290, 293, 296, 299, 302, 488 |
| HpyAV | CCTTC | 3 cut(s) | 91, 799, 973 |
| HpyCH4III | ACNGT | 1 cut(s) | 675 |
| HpyCH4IV | ACGT | 2 cut(s) | 288, 693 |
| HpyCH4V | TGCA | 4 cut(s) | 358, 681, 824, 1055 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 11, 98, 311, 393, 590, 833, 971, 980, 1061 |
| HpyF3I | CTNAG | 7 cut(s) | 191, 338, 594, 897, 949, 1045, 1068 |
| HpySE526I | ACGT | 2 cut(s) | 288, 693 |
| Hsp92I | GRCGYC | 3 cut(s) | 168, 288, 834 |
| HspAI | GCGC | 6 cut(s) | 90, 168, 250, 327, 399, 983 |
| KasI | GGCGCC | 1 cut(s) | 167 |
| KroI | GCCGGC | 1 cut(s) | 164 |
| KroNI | GCCGGC | 1 cut(s) | 166 |
| Ksp22I | TGATCA | 2 cut(s) | 267, 603 |
| Kzo9I | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| LguI | GCTCTTC | 1 cut(s) | 425 |
| LmnI | GCTCC | 7 cut(s) | 54, 97, 314, 555, 746, 771, 935 |
| Lsp1109I | GCAGC | 6 cut(s) | 505, 602, 836, 974, 1036, 1039 |
| LweI | GCATC | 2 cut(s) | 14, 1035 |
| MaeI | CTAG | 1 cut(s) | 986 |
| MaeII | ACGT | 2 cut(s) | 288, 693 |
| MaeIII | GTNAC | 3 cut(s) | 634, 728, 877 |
| MalI | GATC | 9 cut(s) | 189, 215, 269, 605, 910, 947, 1012, 1043, 1073 |
| MboI | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| MboII | GAAGA | 4 cut(s) | 412, 568, 772, 842 |
| MflI | RGATCY | 1 cut(s) | 908 |
| MhlI | GDGCHC | 1 cut(s) | 339 |
| MlsI | TGGCCA | 1 cut(s) | 414 |
| MluNI | TGGCCA | 1 cut(s) | 414 |
| Mly113I | GGCGCC | 1 cut(s) | 168 |
| MlyI | GAGTC | 3 cut(s) | 68, 230, 312 |
| MmeI | TCCRAC | 2 cut(s) | 156, 1000 |
| Mox20I | TGGCCA | 1 cut(s) | 414 |
| MreI | CGCCGGCG | 1 cut(s) | 164 |
| MroNI | GCCGGC | 1 cut(s) | 164 |
| MroXI | GAANNNNTTC | 1 cut(s) | 575 |
| MscI | TGGCCA | 1 cut(s) | 414 |
| MseI | TTAA | 2 cut(s) | 462, 1084 |
| MslI | CAYNNNNRTG | 3 cut(s) | 434, 676, 755 |
| Msp20I | TGGCCA | 1 cut(s) | 414 |
| MspA1I | CMGCKG | 2 cut(s) | 593, 827 |
| MspI | CCGG | 4 cut(s) | 165, 315, 390, 753 |
| MspR9I | CCNGG | 6 cut(s) | 235, 247, 390, 798, 853, 867 |
| Mva1269I | GAATGC | 1 cut(s) | 826 |
| MvaI | CCWGG | 5 cut(s) | 235, 247, 798, 853, 867 |
| MvnI | CGCG | 2 cut(s) | 105, 401 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 11, 98, 311, 393, 590, 833, 971, 980, 1061 |
| NaeI | GCCGGC | 1 cut(s) | 166 |
| NarI | GGCGCC | 1 cut(s) | 168 |
| NciI | CCSGG | 1 cut(s) | 390 |
| NcoI | CCATGG | 2 cut(s) | 9, 429 |
| NdeI | CATATG | 1 cut(s) | 1015 |
| NdeII | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| NgoMIV | GCCGGC | 1 cut(s) | 164 |
| NlaIV | GGNNCC | 5 cut(s) | 169, 310, 687, 748, 924 |
| NmeAIII | GCCGAG | 1 cut(s) | 538 |
| NmuCI | GTSAC | 2 cut(s) | 634, 728 |
| NspI | RCATGY | 1 cut(s) | 518 |
| OliI | CACNNNNGTG | 2 cut(s) | 676, 755 |
| PceI | AGGCCT | 1 cut(s) | 809 |
| PciSI | GCTCTTC | 1 cut(s) | 425 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 93, 147, 282, 294 |
| PctI | GAATGC | 1 cut(s) | 826 |
| PdiI | GCCGGC | 1 cut(s) | 166 |
| PdmI | GAANNNNTTC | 1 cut(s) | 575 |
| PfeI | GAWTC | 1 cut(s) | 1058 |
| PflFI | GACNNNGTC | 1 cut(s) | 290 |
| PleI | GAGTC | 3 cut(s) | 68, 229, 312 |
| PluTI | GGCGCC | 1 cut(s) | 171 |
| PpsI | GAGTC | 3 cut(s) | 68, 229, 312 |
| PpuMI | RGGWCCY | 1 cut(s) | 923 |
| Psp124BI | GAGCTC | 1 cut(s) | 339 |
| Psp1406I | AACGTT | 1 cut(s) | 693 |
| Psp5II | RGGWCCY | 1 cut(s) | 923 |
| Psp6I | CCWGG | 5 cut(s) | 233, 245, 796, 851, 865 |
| PspGI | CCWGG | 5 cut(s) | 233, 245, 796, 851, 865 |
| PspN4I | GGNNCC | 5 cut(s) | 169, 310, 687, 748, 924 |
| PspPI | GGNCC | 5 cut(s) | 561, 645, 685, 737, 923 |
| PspPPI | RGGWCCY | 1 cut(s) | 923 |
| PstI | CTGCAG | 1 cut(s) | 1057 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1061 |
| PsuI | RGATCY | 1 cut(s) | 908 |
| PsyI | GACNNNGTC | 1 cut(s) | 290 |
| PvuII | CAGCTG | 2 cut(s) | 593, 827 |
| RseI | CAYNNNNRTG | 3 cut(s) | 434, 676, 755 |
| SacI | GAGCTC | 1 cut(s) | 339 |
| SapI | GCTCTTC | 1 cut(s) | 425 |
| SaqAI | TTAA | 2 cut(s) | 462, 1084 |
| Sau3AI | GATC | 9 cut(s) | 187, 213, 267, 603, 908, 945, 1010, 1041, 1071 |
| Sau96I | GGNCC | 5 cut(s) | 561, 645, 685, 737, 923 |
| SchI | GAGTC | 3 cut(s) | 68, 230, 312 |
| ScrFI | CCNGG | 6 cut(s) | 235, 247, 390, 798, 853, 867 |
| SduI | GDGCHC | 1 cut(s) | 339 |
| SfaNI | GCATC | 2 cut(s) | 14, 1035 |
| SfcI | CTRYAG | 1 cut(s) | 1053 |
| SfoI | GGCGCC | 1 cut(s) | 169 |
| SgrAI | CRCCGGYG | 2 cut(s) | 164, 752 |
| SinI | GGWCC | 2 cut(s) | 685, 923 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 434, 676, 755 |
| SmlI | CTYRAG | 1 cut(s) | 116 |
| SmoI | CTYRAG | 1 cut(s) | 116 |
| SseBI | AGGCCT | 1 cut(s) | 809 |
| SspDI | GGCGCC | 1 cut(s) | 167 |
| SspMI | CTAG | 1 cut(s) | 986 |
| SstI | GAGCTC | 1 cut(s) | 339 |
| StuI | AGGCCT | 1 cut(s) | 809 |
| StyD4I | CCNGG | 6 cut(s) | 233, 245, 388, 796, 851, 865 |
| StyI | CCWWGG | 5 cut(s) | 9, 429, 648, 705, 810 |
| TaaI | ACNGT | 1 cut(s) | 675 |
| TaiI | ACGT | 2 cut(s) | 291, 696 |
| TaqI | TCGA | 1 cut(s) | 72 |
| TauI | GCSGC | 4 cut(s) | 29, 125, 396, 399 |
| TfiI | GAWTC | 1 cut(s) | 1058 |
| Tru1I | TTAA | 2 cut(s) | 462, 1084 |
| Tru9I | TTAA | 2 cut(s) | 462, 1084 |
| TseFI | GTSAC | 2 cut(s) | 634, 728 |
| TseI | GCWGC | 6 cut(s) | 518, 590, 824, 962, 1049, 1052 |
| Tsp45I | GTSAC | 2 cut(s) | 634, 728 |
| TspDTI | ATGAA | 3 cut(s) | 674, 818, 833 |
| TspGWI | ACGGA | 2 cut(s) | 139, 370 |
| Tth111I | GACNNNGTC | 1 cut(s) | 290 |
| VpaK11BI | GGWCC | 2 cut(s) | 685, 923 |
| XceI | RCATGY | 1 cut(s) | 518 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 646 |
| XmnI | GAANNNNTTC | 1 cut(s) | 575 |
| XspI | CTAG | 1 cut(s) | 986 |
| ZraI | GACGTC | 1 cut(s) | 289 |