ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 343, 579 |
| AccB1I | GGYRCC | 2 cut(s) | 343, 579 |
| AciI | CCGC | 1 cut(s) | 471 |
| AclWI | GGATC | 3 cut(s) | 416, 566, 780 |
| AcoI | YGGCCR | 2 cut(s) | 15, 147 |
| AcsI | RAATTY | 4 cut(s) | 20, 54, 181, 498 |
| AcvI | CACGTG | 1 cut(s) | 309 |
| AfaI | GTAC | 3 cut(s) | 345, 581, 804 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 13, 24, 156 |
| AgsI | TTSAA | 2 cut(s) | 133, 403 |
| AjnI | CCWGG | 4 cut(s) | 68, 220, 229, 245 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 604, 636 |
| AluBI | AGCT | 3 cut(s) | 140, 209, 274 |
| AluI | AGCT | 3 cut(s) | 140, 209, 274 |
| Alw26I | GTCTC | 3 cut(s) | 157, 508, 802 |
| AlwI | GGATC | 3 cut(s) | 416, 566, 780 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 811 |
| AoxI | GGCC | 3 cut(s) | 15, 147, 365 |
| ApeKI | GCWGC | 1 cut(s) | 602 |
| ApoI | RAATTY | 4 cut(s) | 20, 54, 181, 498 |
| Asp718I | GGTACC | 2 cut(s) | 343, 579 |
| AspS9I | GGNCC | 2 cut(s) | 226, 682 |
| AsuHPI | GGTGA | 1 cut(s) | 44 |
| AvaII | GGWCC | 2 cut(s) | 226, 682 |
| BalI | TGGCCA | 1 cut(s) | 149 |
| BanI | GGYRCC | 2 cut(s) | 343, 579 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 563, 595 |
| BbrPI | CACGTG | 1 cut(s) | 309 |
| BbvI | GCAGC | 1 cut(s) | 589 |
| BccI | CCATC | 1 cut(s) | 591 |
| BciT130I | CCWGG | 4 cut(s) | 70, 222, 231, 247 |
| BciVI | GTATCC | 2 cut(s) | 95, 282 |
| BclI | TGATCA | 1 cut(s) | 40 |
| BcoDI | GTCTC | 3 cut(s) | 157, 508, 802 |
| BfaI | CTAG | 2 cut(s) | 591, 815 |
| BfuI | GTATCC | 2 cut(s) | 95, 282 |
| BisI | GCNGC | 1 cut(s) | 603 |
| BlsI | GCNGC | 1 cut(s) | 604 |
| Bme1390I | CCNGG | 4 cut(s) | 70, 222, 231, 247 |
| Bme18I | GGWCC | 2 cut(s) | 226, 682 |
| BmgT120I | GGNCC | 2 cut(s) | 226, 682 |
| BmiI | GGNNCC | 5 cut(s) | 227, 228, 345, 581, 683 |
| BmrFI | CCNGG | 4 cut(s) | 70, 222, 231, 247 |
| BmsI | GCATC | 1 cut(s) | 735 |
| BpmI | CTGGAG | 1 cut(s) | 476 |
| BsaAI | YACGTR | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 4 cut(s) | 69, 221, 229, 230 |
| BsaWI | WCCGGW | 1 cut(s) | 424 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 13, 24, 156 |
| Bse1I | ACTGG | 1 cut(s) | 65 |
| BseBI | CCWGG | 4 cut(s) | 70, 222, 231, 247 |
| BseDI | CCNNGG | 4 cut(s) | 69, 221, 229, 230 |
| BseGI | GGATG | 2 cut(s) | 447, 726 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 13, 24, 156 |
| BseMII | CTCAG | 1 cut(s) | 520 |
| BseNI | ACTGG | 1 cut(s) | 65 |
| BseXI | GCAGC | 1 cut(s) | 589 |
| BseYI | CCCAGC | 1 cut(s) | 677 |
| BshFI | GGCC | 3 cut(s) | 17, 149, 367 |
| BshNI | GGYRCC | 2 cut(s) | 343, 579 |
| BsiSI | CCGG | 1 cut(s) | 425 |
| BslFI | GGGAC | 2 cut(s) | 86, 239 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 13, 24, 156 |
| BsmAI | GTCTC | 3 cut(s) | 157, 508, 802 |
| BsmFI | GGGAC | 2 cut(s) | 86, 239 |
| BsnI | GGCC | 3 cut(s) | 17, 149, 367 |
| Bsp1407I | TGTACA | 1 cut(s) | 802 |
| Bsp143I | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| BspACI | CCGC | 1 cut(s) | 471 |
| BspANI | GGCC | 3 cut(s) | 17, 149, 367 |
| BspCNI | CTCAG | 1 cut(s) | 519 |
| BspLI | GGNNCC | 5 cut(s) | 227, 228, 345, 581, 683 |
| BspPI | GGATC | 3 cut(s) | 416, 566, 780 |
| BspQI | GCTCTTC | 1 cut(s) | 147 |
| BspT107I | GGYRCC | 2 cut(s) | 343, 579 |
| BsrGI | TGTACA | 1 cut(s) | 802 |
| BsrI | ACTGG | 1 cut(s) | 65 |
| BssECI | CCNNGG | 4 cut(s) | 69, 221, 229, 230 |
| BssMI | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| Bst2UI | CCWGG | 4 cut(s) | 70, 222, 231, 247 |
| Bst4CI | ACNGT | 1 cut(s) | 8 |
| Bst6I | CTCTTC | 2 cut(s) | 147, 566 |
| BstAUI | TGTACA | 1 cut(s) | 802 |
| BstBAI | YACGTR | 1 cut(s) | 309 |
| BstDEI | CTNAG | 2 cut(s) | 432, 506 |
| BstF5I | GGATG | 2 cut(s) | 447, 726 |
| BstKTI | GATC | 6 cut(s) | 43, 337, 424, 550, 561, 775 |
| BstMAI | GTCTC | 3 cut(s) | 157, 508, 802 |
| BstMBI | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 146, 820 |
| BstNI | CCWGG | 4 cut(s) | 70, 222, 231, 247 |
| BstSCI | CCNGG | 4 cut(s) | 68, 220, 229, 245 |
| BstV1I | GCAGC | 1 cut(s) | 589 |
| BstX2I | RGATCY | 1 cut(s) | 558 |
| BstYI | RGATCY | 1 cut(s) | 558 |
| BsuI | GTATCC | 2 cut(s) | 95, 282 |
| BsuRI | GGCC | 3 cut(s) | 17, 149, 367 |
| BtsCI | GGATG | 2 cut(s) | 447, 726 |
| BtsIMutI | CAGTG | 1 cut(s) | 58 |
| CaiI | CAGNNNCTG | 1 cut(s) | 811 |
| Cfr13I | GGNCC | 2 cut(s) | 226, 682 |
| Csp6I | GTAC | 3 cut(s) | 344, 580, 803 |
| CviAII | CATG | 4 cut(s) | 13, 554, 632, 646 |
| CviQI | GTAC | 3 cut(s) | 344, 580, 803 |
| DdeI | CTNAG | 2 cut(s) | 432, 506 |
| DpnI | GATC | 6 cut(s) | 42, 336, 423, 549, 560, 774 |
| DpnII | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| EaeI | YGGCCR | 2 cut(s) | 15, 147 |
| Eam1104I | CTCTTC | 2 cut(s) | 147, 566 |
| EarI | CTCTTC | 2 cut(s) | 147, 566 |
| Eco147I | AGGCCT | 1 cut(s) | 367 |
| Eco47I | GGWCC | 2 cut(s) | 226, 682 |
| Eco72I | CACGTG | 1 cut(s) | 309 |
| EcoO109I | RGGNCCY | 1 cut(s) | 226 |
| EcoRI | GAATTC | 1 cut(s) | 20 |
| EcoRII | CCWGG | 4 cut(s) | 68, 220, 229, 245 |
| FaeI | CATG | 4 cut(s) | 16, 557, 635, 649 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 261, 293 |
| FaqI | GGGAC | 2 cut(s) | 86, 239 |
| FatI | CATG | 4 cut(s) | 12, 553, 631, 645 |
| FauNDI | CATATG | 1 cut(s) | 475 |
| FbaI | TGATCA | 1 cut(s) | 40 |
| Fnu4HI | GCNGC | 1 cut(s) | 603 |
| FokI | GGATG | 2 cut(s) | 454, 713 |
| Fsp4HI | GCNGC | 1 cut(s) | 603 |
| FspBI | CTAG | 2 cut(s) | 591, 815 |
| GluI | GCNGC | 1 cut(s) | 603 |
| GsaI | CCCAGC | 1 cut(s) | 681 |
| GsuI | CTGGAG | 1 cut(s) | 476 |
| HaeIII | GGCC | 3 cut(s) | 17, 149, 367 |
| HapII | CCGG | 1 cut(s) | 425 |
| Hin1II | CATG | 4 cut(s) | 16, 557, 635, 649 |
| HinfI | GANTC | 2 cut(s) | 35, 236 |
| HpaII | CCGG | 1 cut(s) | 425 |
| HphI | GGTGA | 1 cut(s) | 44 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 378 |
| Hpy188III | TCNNGA | 3 cut(s) | 278, 455, 697 |
| HpyAV | CCTTC | 3 cut(s) | 92, 397, 667 |
| HpyCH4III | ACNGT | 1 cut(s) | 8 |
| HpyCH4IV | ACGT | 2 cut(s) | 292, 308 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 12, 553 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 146, 820 |
| HpyF3I | CTNAG | 2 cut(s) | 432, 506 |
| HpySE526I | ACGT | 2 cut(s) | 292, 308 |
| Hsp92II | CATG | 4 cut(s) | 16, 557, 635, 649 |
| KflI | GGGWCCC | 1 cut(s) | 226 |
| KpnI | GGTACC | 2 cut(s) | 347, 583 |
| Ksp22I | TGATCA | 1 cut(s) | 40 |
| Kzo9I | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| LguI | GCTCTTC | 1 cut(s) | 147 |
| Lsp1109I | GCAGC | 1 cut(s) | 589 |
| LweI | GCATC | 1 cut(s) | 735 |
| MaeI | CTAG | 2 cut(s) | 591, 815 |
| MaeII | ACGT | 2 cut(s) | 292, 308 |
| MaeIII | GTNAC | 3 cut(s) | 32, 427, 606 |
| MalI | GATC | 6 cut(s) | 42, 336, 423, 549, 560, 774 |
| MboI | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| MboII | GAAGA | 7 cut(s) | 60, 107, 134, 407, 583, 615, 618 |
| MflI | RGATCY | 1 cut(s) | 558 |
| MlsI | TGGCCA | 1 cut(s) | 149 |
| MluCI | AATT | 8 cut(s) | 20, 54, 181, 417, 498, 717, 763, 776 |
| MluNI | TGGCCA | 1 cut(s) | 149 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MmeI | TCCRAC | 2 cut(s) | 372, 709 |
| MnlI | CCTC | 8 cut(s) | 95, 363, 379, 451, 472, 513, 705, 736 |
| Mox20I | TGGCCA | 1 cut(s) | 149 |
| MscI | TGGCCA | 1 cut(s) | 149 |
| MseI | TTAA | 5 cut(s) | 257, 416, 716, 720, 762 |
| MslI | CAYNNNNRTG | 1 cut(s) | 636 |
| Msp20I | TGGCCA | 1 cut(s) | 149 |
| MspI | CCGG | 1 cut(s) | 425 |
| MspR9I | CCNGG | 4 cut(s) | 70, 222, 231, 247 |
| MvaI | CCWGG | 4 cut(s) | 70, 222, 231, 247 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 146, 820 |
| NdeI | CATATG | 1 cut(s) | 475 |
| NdeII | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| NlaIII | CATG | 4 cut(s) | 16, 557, 635, 649 |
| NlaIV | GGNNCC | 5 cut(s) | 227, 228, 345, 581, 683 |
| NmuCI | GTSAC | 1 cut(s) | 32 |
| PacI | TTAATTAA | 1 cut(s) | 720 |
| PasI | CCCWGGG | 1 cut(s) | 230 |
| PceI | AGGCCT | 1 cut(s) | 367 |
| PciSI | GCTCTTC | 1 cut(s) | 147 |
| PfeI | GAWTC | 1 cut(s) | 236 |
| PkrI | GCNGC | 1 cut(s) | 604 |
| PleI | GAGTC | 1 cut(s) | 29 |
| PmaCI | CACGTG | 1 cut(s) | 309 |
| PmlI | CACGTG | 1 cut(s) | 309 |
| PpsI | GAGTC | 1 cut(s) | 29 |
| Ppu21I | YACGTR | 1 cut(s) | 309 |
| PpuMI | RGGWCCY | 1 cut(s) | 226 |
| Psp5II | RGGWCCY | 1 cut(s) | 226 |
| Psp6I | CCWGG | 4 cut(s) | 68, 220, 229, 245 |
| PspCI | CACGTG | 1 cut(s) | 309 |
| PspFI | CCCAGC | 1 cut(s) | 677 |
| PspGI | CCWGG | 4 cut(s) | 68, 220, 229, 245 |
| PspN4I | GGNNCC | 5 cut(s) | 227, 228, 345, 581, 683 |
| PspPI | GGNCC | 2 cut(s) | 226, 682 |
| PspPPI | RGGWCCY | 1 cut(s) | 226 |
| PstNI | CAGNNNCTG | 1 cut(s) | 811 |
| PsuI | RGATCY | 1 cut(s) | 558 |
| RsaI | GTAC | 3 cut(s) | 345, 581, 804 |
| RsaNI | GTAC | 3 cut(s) | 344, 580, 803 |
| RseI | CAYNNNNRTG | 1 cut(s) | 636 |
| SapI | GCTCTTC | 1 cut(s) | 147 |
| SaqAI | TTAA | 5 cut(s) | 257, 416, 716, 720, 762 |
| SatI | GCNGC | 1 cut(s) | 603 |
| Sau3AI | GATC | 6 cut(s) | 40, 334, 421, 547, 558, 772 |
| Sau96I | GGNCC | 2 cut(s) | 226, 682 |
| SchI | GAGTC | 1 cut(s) | 29 |
| ScrFI | CCNGG | 4 cut(s) | 70, 222, 231, 247 |
| SfaNI | GCATC | 1 cut(s) | 735 |
| SinI | GGWCC | 2 cut(s) | 226, 682 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 636 |
| Sse9I | AATT | 8 cut(s) | 20, 54, 181, 417, 498, 717, 763, 776 |
| SseBI | AGGCCT | 1 cut(s) | 367 |
| SsiI | CCGC | 1 cut(s) | 471 |
| SspI | AATATT | 1 cut(s) | 215 |
| SspMI | CTAG | 2 cut(s) | 591, 815 |
| StuI | AGGCCT | 1 cut(s) | 367 |
| StyD4I | CCNGG | 4 cut(s) | 68, 220, 229, 245 |
| TaaI | ACNGT | 1 cut(s) | 8 |
| TaiI | ACGT | 2 cut(s) | 295, 311 |
| TaqI | TCGA | 1 cut(s) | 333 |
| TasI | AATT | 8 cut(s) | 20, 54, 181, 417, 498, 717, 763, 776 |
| TatI | WGTACW | 1 cut(s) | 802 |
| TfiI | GAWTC | 1 cut(s) | 236 |
| Tru1I | TTAA | 5 cut(s) | 257, 416, 716, 720, 762 |
| Tru9I | TTAA | 5 cut(s) | 257, 416, 716, 720, 762 |
| TscAI | CASTG | 1 cut(s) | 65 |
| TseFI | GTSAC | 1 cut(s) | 32 |
| TseI | GCWGC | 1 cut(s) | 602 |
| Tsp45I | GTSAC | 1 cut(s) | 32 |
| TspDTI | ATGAA | 2 cut(s) | 275, 662 |
| TspRI | CASTG | 1 cut(s) | 65 |
| VpaK11BI | GGWCC | 2 cut(s) | 226, 682 |
| XapI | RAATTY | 4 cut(s) | 20, 54, 181, 498 |
| XspI | CTAG | 2 cut(s) | 591, 815 |