Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 10 - 60 | 2.2e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 217 |
| AccB1I | GGYRCC | 1 cut(s) | 217 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 166 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 313 |
| AfaI | GTAC | 1 cut(s) | 219 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 166, 247, 304 |
| AflIII | ACRYGT | 2 cut(s) | 130, 182 |
| AgsI | TTSAA | 1 cut(s) | 11 |
| AjnI | CCWGG | 1 cut(s) | 45 |
| AluBI | AGCT | 2 cut(s) | 37, 344 |
| AluI | AGCT | 2 cut(s) | 37, 344 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| AoxI | GGCC | 2 cut(s) | 3, 156 |
| ApeKI | GCWGC | 1 cut(s) | 34 |
| ApoI | RAATTY | 1 cut(s) | 313 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 120, 152 |
| AseI | ATTAAT | 2 cut(s) | 321, 327 |
| Asp718I | GGTACC | 1 cut(s) | 217 |
| AspS9I | GGNCC | 1 cut(s) | 157 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 217 |
| BauI | CACGAG | 1 cut(s) | 276 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BccI | CCATC | 1 cut(s) | 298 |
| BciT130I | CCWGG | 1 cut(s) | 47 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BisI | GCNGC | 1 cut(s) | 35 |
| BlpI | GCTNAGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 1 cut(s) | 47 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 1 cut(s) | 157 |
| BmiI | GGNNCC | 1 cut(s) | 219 |
| BmrFI | CCNGG | 1 cut(s) | 47 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 2 cut(s) | 46, 213 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 166, 247, 304 |
| BseBI | CCWGG | 1 cut(s) | 47 |
| BseDI | CCNNGG | 2 cut(s) | 46, 213 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 166, 247, 304 |
| BseMII | CTCAG | 1 cut(s) | 336 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BshFI | GGCC | 2 cut(s) | 5, 158 |
| BshNI | GGYRCC | 1 cut(s) | 217 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BslFI | GGGAC | 1 cut(s) | 280 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 166, 247, 304 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 1 cut(s) | 280 |
| BsnI | GGCC | 2 cut(s) | 5, 158 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 345 |
| BspANI | GGCC | 2 cut(s) | 5, 158 |
| BspCNI | CTCAG | 1 cut(s) | 337 |
| BspLI | GGNNCC | 1 cut(s) | 219 |
| BspT107I | GGYRCC | 1 cut(s) | 217 |
| BssECI | CCNNGG | 2 cut(s) | 46, 213 |
| BssSI | CACGAG | 1 cut(s) | 276 |
| Bst2BI | CACGAG | 1 cut(s) | 276 |
| Bst2UI | CCWGG | 1 cut(s) | 47 |
| Bst4CI | ACNGT | 3 cut(s) | 98, 152, 257 |
| BstDEI | CTNAG | 2 cut(s) | 208, 345 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 176 |
| BstNI | CCWGG | 1 cut(s) | 47 |
| BstNSI | RCATGY | 1 cut(s) | 134 |
| BstSCI | CCNGG | 1 cut(s) | 45 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BsuRI | GGCC | 2 cut(s) | 5, 158 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 1 cut(s) | 157 |
| Cfr13I | GGNCC | 1 cut(s) | 157 |
| Csp6I | GTAC | 1 cut(s) | 218 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 34, 135, 170 |
| CviAII | CATG | 3 cut(s) | 14, 58, 131 |
| CviJI | RGCY | 7 cut(s) | 5, 37, 158, 170, 212, 344, 349 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 37, 158, 170, 212, 344, 349 |
| CviQI | GTAC | 1 cut(s) | 218 |
| DdeI | CTNAG | 2 cut(s) | 208, 345 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 245 |
| EcoRII | CCWGG | 1 cut(s) | 45 |
| EcoT22I | ATGCAT | 1 cut(s) | 105 |
| FaeI | CATG | 3 cut(s) | 17, 61, 134 |
| FaiI | YATR | 8 cut(s) | 15, 59, 101, 117, 132, 162, 246, 293 |
| FaqI | GGGAC | 1 cut(s) | 280 |
| FatI | CATG | 3 cut(s) | 13, 57, 130 |
| Fnu4HI | GCNGC | 1 cut(s) | 35 |
| FokI | GGATG | 1 cut(s) | 248 |
| Fsp4HI | GCNGC | 1 cut(s) | 35 |
| GluI | GCNGC | 1 cut(s) | 35 |
| HaeIII | GGCC | 2 cut(s) | 5, 158 |
| Hin1II | CATG | 3 cut(s) | 17, 61, 134 |
| Hpy188I | TCNGA | 2 cut(s) | 75, 128 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 233 |
| HpyCH4III | ACNGT | 3 cut(s) | 98, 152, 257 |
| HpyCH4IV | ACGT | 1 cut(s) | 182 |
| HpyCH4V | TGCA | 2 cut(s) | 103, 179 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 176 |
| HpyF3I | CTNAG | 2 cut(s) | 208, 345 |
| HpySE526I | ACGT | 1 cut(s) | 182 |
| Hsp92II | CATG | 3 cut(s) | 17, 61, 134 |
| KpnI | GGTACC | 1 cut(s) | 221 |
| LmnI | GCTCC | 1 cut(s) | 341 |
| LpnPI | CCDG | 5 cut(s) | 32, 59, 218, 234, 319 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| MaeII | ACGT | 1 cut(s) | 182 |
| MaeIII | GTNAC | 4 cut(s) | 41, 53, 118, 271 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 313 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 2 cut(s) | 53, 151 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 105 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 267, 321, 327, 355 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 47 |
| MvaI | CCWGG | 1 cut(s) | 47 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 176 |
| NlaIII | CATG | 3 cut(s) | 17, 61, 134 |
| NlaIV | GGNNCC | 1 cut(s) | 219 |
| NmeAIII | GCCGAG | 1 cut(s) | 238 |
| NmuCI | GTSAC | 2 cut(s) | 53, 271 |
| NsiI | ATGCAT | 1 cut(s) | 105 |
| NspI | RCATGY | 1 cut(s) | 134 |
| PaeR7I | CTCGAG | 1 cut(s) | 29 |
| PciI | ACATGT | 1 cut(s) | 130 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 166 |
| PkrI | GCNGC | 1 cut(s) | 36 |
| PscI | ACATGT | 1 cut(s) | 130 |
| PshBI | ATTAAT | 2 cut(s) | 321, 327 |
| Psp6I | CCWGG | 1 cut(s) | 45 |
| PspGI | CCWGG | 1 cut(s) | 45 |
| PspN4I | GGNNCC | 1 cut(s) | 219 |
| PspPI | GGNCC | 1 cut(s) | 157 |
| PspXI | VCTCGAGB | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 219 |
| RsaNI | GTAC | 1 cut(s) | 218 |
| SaqAI | TTAA | 4 cut(s) | 267, 321, 327, 355 |
| SatI | GCNGC | 1 cut(s) | 35 |
| Sau96I | GGNCC | 1 cut(s) | 157 |
| ScrFI | CCNGG | 1 cut(s) | 47 |
| Sfr274I | CTCGAG | 1 cut(s) | 29 |
| SlaI | CTCGAG | 1 cut(s) | 29 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| Sse9I | AATT | 1 cut(s) | 313 |
| SspI | AATATT | 1 cut(s) | 325 |
| StyD4I | CCNGG | 1 cut(s) | 45 |
| TaaI | ACNGT | 3 cut(s) | 98, 152, 257 |
| TaiI | ACGT | 1 cut(s) | 185 |
| TaqI | TCGA | 2 cut(s) | 30, 302 |
| TasI | AATT | 1 cut(s) | 313 |
| Tru1I | TTAA | 4 cut(s) | 267, 321, 327, 355 |
| Tru9I | TTAA | 4 cut(s) | 267, 321, 327, 355 |
| TscAI | CASTG | 1 cut(s) | 157 |
| TseFI | GTSAC | 2 cut(s) | 53, 271 |
| TseI | GCWGC | 1 cut(s) | 34 |
| Tsp45I | GTSAC | 2 cut(s) | 53, 271 |
| TspDTI | ATGAA | 1 cut(s) | 217 |
| TspRI | CASTG | 1 cut(s) | 157 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 166 |
| VspI | ATTAAT | 2 cut(s) | 321, 327 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 313 |
| XceI | RCATGY | 1 cut(s) | 134 |
| XhoI | CTCGAG | 1 cut(s) | 29 |
| Zsp2I | ATGCAT | 1 cut(s) | 105 |