ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 11 - 133 | 1.9e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 348 |
| AgsI | TTSAA | 5 cut(s) | 134, 241, 276, 455, 488 |
| AjnI | CCWGG | 1 cut(s) | 334 |
| AluBI | AGCT | 5 cut(s) | 182, 248, 267, 392, 470 |
| AluI | AGCT | 5 cut(s) | 182, 248, 267, 392, 470 |
| Alw26I | GTCTC | 1 cut(s) | 221 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 220, 252 |
| BbsI | GAAGAC | 1 cut(s) | 301 |
| BccI | CCATC | 2 cut(s) | 32, 359 |
| BciT130I | CCWGG | 1 cut(s) | 336 |
| BciVI | GTATCC | 1 cut(s) | 424 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 1 cut(s) | 221 |
| BfaI | CTAG | 3 cut(s) | 209, 360, 464 |
| BfuI | GTATCC | 1 cut(s) | 424 |
| Bme1390I | CCNGG | 1 cut(s) | 336 |
| BmiI | GGNNCC | 1 cut(s) | 340 |
| BmrFI | CCNGG | 1 cut(s) | 336 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BpiI | GAAGAC | 1 cut(s) | 301 |
| Bpu10I | CCTNAGC | 2 cut(s) | 268, 393 |
| BsaBI | GATNNNNATC | 2 cut(s) | 8, 477 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 424, 454 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 348 |
| Bse8I | GATNNNNATC | 2 cut(s) | 8, 477 |
| BseBI | CCWGG | 1 cut(s) | 336 |
| BseJI | GATNNNNATC | 2 cut(s) | 8, 477 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 348 |
| BseMII | CTCAG | 2 cut(s) | 108, 282 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 348 |
| BsmAI | GTCTC | 1 cut(s) | 221 |
| BsmI | GAATGC | 4 cut(s) | 44, 376, 382, 406 |
| Bsp143I | GATC | 2 cut(s) | 3, 9 |
| BspCNI | CTCAG | 2 cut(s) | 107, 281 |
| BspLI | GGNNCC | 1 cut(s) | 340 |
| BssMI | GATC | 2 cut(s) | 3, 9 |
| Bst2UI | CCWGG | 1 cut(s) | 336 |
| Bst4CI | ACNGT | 1 cut(s) | 420 |
| BstDEI | CTNAG | 4 cut(s) | 94, 244, 268, 393 |
| BstKTI | GATC | 2 cut(s) | 6, 12 |
| BstMAI | GTCTC | 1 cut(s) | 221 |
| BstMBI | GATC | 2 cut(s) | 3, 9 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 398, 412, 467 |
| BstNI | CCWGG | 1 cut(s) | 336 |
| BstNSI | RCATGY | 1 cut(s) | 121 |
| BstSCI | CCNGG | 1 cut(s) | 334 |
| BstV2I | GAAGAC | 1 cut(s) | 301 |
| BsuI | GTATCC | 1 cut(s) | 424 |
| Csp6I | GTAC | 1 cut(s) | 194 |
| CviAII | CATG | 2 cut(s) | 118, 343 |
| CviJI | RGCY | 9 cut(s) | 22, 102, 182, 248, 267, 322, 341, 392, 470 |
| CviKI_1 | RGCY | 9 cut(s) | 22, 102, 182, 248, 267, 322, 341, 392, 470 |
| CviQI | GTAC | 1 cut(s) | 194 |
| DdeI | CTNAG | 4 cut(s) | 94, 244, 268, 393 |
| DpnI | GATC | 2 cut(s) | 5, 11 |
| DpnII | GATC | 2 cut(s) | 3, 9 |
| EcoRII | CCWGG | 1 cut(s) | 334 |
| FaeI | CATG | 2 cut(s) | 121, 346 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FatI | CATG | 2 cut(s) | 117, 342 |
| FauNDI | CATATG | 1 cut(s) | 63 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| FspBI | CTAG | 3 cut(s) | 209, 360, 464 |
| Hin1II | CATG | 2 cut(s) | 121, 346 |
| HinfI | GANTC | 2 cut(s) | 233, 297 |
| Hpy166II | GTNNAC | 2 cut(s) | 142, 259 |
| Hpy188I | TCNGA | 1 cut(s) | 97 |
| Hpy188III | TCNNGA | 4 cut(s) | 7, 149, 360, 455 |
| Hpy8I | GTNNAC | 2 cut(s) | 142, 259 |
| HpyAV | CCTTC | 2 cut(s) | 92, 311 |
| HpyCH4III | ACNGT | 1 cut(s) | 420 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 382, 406 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 398, 412, 467 |
| HpyF3I | CTNAG | 4 cut(s) | 94, 244, 268, 393 |
| Hsp92II | CATG | 2 cut(s) | 121, 346 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 2 cut(s) | 3, 9 |
| LmnI | GCTCC | 1 cut(s) | 338 |
| LpnPI | CCDG | 6 cut(s) | 156, 162, 255, 321, 348, 396 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 3 cut(s) | 209, 360, 464 |
| MalI | GATC | 2 cut(s) | 5, 11 |
| MboI | GATC | 2 cut(s) | 3, 9 |
| MboII | GAAGA | 3 cut(s) | 306, 473, 476 |
| MluCI | AATT | 2 cut(s) | 31, 276 |
| MlyI | GAGTC | 1 cut(s) | 291 |
| MmeI | TCCRAC | 1 cut(s) | 55 |
| MnlI | CCTC | 4 cut(s) | 154, 168, 298, 450 |
| MslI | CAYNNNNRTG | 1 cut(s) | 66 |
| MspR9I | CCNGG | 1 cut(s) | 336 |
| Mva1269I | GAATGC | 4 cut(s) | 44, 376, 382, 406 |
| MvaI | CCWGG | 1 cut(s) | 336 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 398, 412, 467 |
| NdeI | CATATG | 1 cut(s) | 63 |
| NdeII | GATC | 2 cut(s) | 3, 9 |
| NlaIII | CATG | 2 cut(s) | 121, 346 |
| NlaIV | GGNNCC | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 121 |
| PctI | GAATGC | 4 cut(s) | 44, 376, 382, 406 |
| PfeI | GAWTC | 1 cut(s) | 233 |
| PleI | GAGTC | 1 cut(s) | 291 |
| PpsI | GAGTC | 1 cut(s) | 291 |
| Psp6I | CCWGG | 1 cut(s) | 334 |
| PspGI | CCWGG | 1 cut(s) | 334 |
| PspN4I | GGNNCC | 1 cut(s) | 340 |
| RsaI | GTAC | 1 cut(s) | 195 |
| RsaNI | GTAC | 1 cut(s) | 194 |
| RseI | CAYNNNNRTG | 1 cut(s) | 66 |
| Sau3AI | GATC | 2 cut(s) | 3, 9 |
| SchI | GAGTC | 1 cut(s) | 291 |
| ScrFI | CCNGG | 1 cut(s) | 336 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 66 |
| Sse9I | AATT | 2 cut(s) | 31, 276 |
| SspMI | CTAG | 3 cut(s) | 209, 360, 464 |
| StyD4I | CCNGG | 1 cut(s) | 334 |
| TaaI | ACNGT | 1 cut(s) | 420 |
| TasI | AATT | 2 cut(s) | 31, 276 |
| TfiI | GAWTC | 1 cut(s) | 233 |
| XbaI | TCTAGA | 1 cut(s) | 359 |
| XceI | RCATGY | 1 cut(s) | 121 |
| XspI | CTAG | 3 cut(s) | 209, 360, 464 |