Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 678 |
| AccB1I | GGYRCC | 2 cut(s) | 615, 666 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 336 |
| AciI | CCGC | 1 cut(s) | 323 |
| AclWI | GGATC | 3 cut(s) | 419, 470, 511 |
| AcuI | CTGAAG | 1 cut(s) | 167 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 336, 526 |
| AflIII | ACRYGT | 1 cut(s) | 652 |
| AjnI | CCWGG | 1 cut(s) | 520 |
| AluBI | AGCT | 3 cut(s) | 170, 512, 551 |
| AluI | AGCT | 3 cut(s) | 170, 512, 551 |
| Alw21I | GWGCWC | 1 cut(s) | 10 |
| Alw26I | GTCTC | 3 cut(s) | 78, 310, 535 |
| AlwI | GGATC | 3 cut(s) | 419, 470, 511 |
| Ama87I | CYCGRG | 1 cut(s) | 429 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| AspLEI | GCGC | 1 cut(s) | 679 |
| AsuHPI | GGTGA | 4 cut(s) | 451, 485, 617, 623 |
| AvaI | CYCGRG | 1 cut(s) | 429 |
| BaeGI | GKGCMC | 1 cut(s) | 671 |
| BanI | GGYRCC | 2 cut(s) | 615, 666 |
| Bbv12I | GWGCWC | 1 cut(s) | 10 |
| BbvI | GCAGC | 1 cut(s) | 271 |
| BccI | CCATC | 2 cut(s) | 33, 436 |
| BceAI | ACGGC | 1 cut(s) | 612 |
| BciT130I | CCWGG | 1 cut(s) | 522 |
| BciVI | GTATCC | 1 cut(s) | 319 |
| BclI | TGATCA | 1 cut(s) | 238 |
| BcoDI | GTCTC | 3 cut(s) | 78, 310, 535 |
| BfaI | CTAG | 3 cut(s) | 90, 171, 573 |
| BfuI | GTATCC | 1 cut(s) | 319 |
| BisI | GCNGC | 1 cut(s) | 285 |
| BlsI | GCNGC | 1 cut(s) | 286 |
| Bme1390I | CCNGG | 1 cut(s) | 522 |
| BmeT110I | CYCGRG | 1 cut(s) | 429 |
| BmiI | GGNNCC | 3 cut(s) | 217, 617, 668 |
| BmrFI | CCNGG | 1 cut(s) | 522 |
| BmsI | GCATC | 4 cut(s) | 109, 310, 373, 439 |
| BpuEI | CTTGAG | 2 cut(s) | 68, 354 |
| BsaI | GGTCTC | 1 cut(s) | 535 |
| BsaJI | CCNNGG | 3 cut(s) | 428, 520, 521 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 682, 712 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 336, 526 |
| Bse118I | RCCGGY | 1 cut(s) | 280 |
| Bse1I | ACTGG | 2 cut(s) | 607, 634 |
| BseBI | CCWGG | 1 cut(s) | 522 |
| BseDI | CCNNGG | 3 cut(s) | 428, 520, 521 |
| BseGI | GGATG | 3 cut(s) | 44, 124, 454 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 336, 526 |
| BseMII | CTCAG | 1 cut(s) | 418 |
| BseNI | ACTGG | 2 cut(s) | 607, 634 |
| BseRI | GAGGAG | 3 cut(s) | 252, 454, 687 |
| BseSI | GKGCMC | 1 cut(s) | 671 |
| BseXI | GCAGC | 1 cut(s) | 271 |
| BshNI | GGYRCC | 2 cut(s) | 615, 666 |
| BsiHKAI | GWGCWC | 1 cut(s) | 10 |
| BsiHKCI | CYCGRG | 1 cut(s) | 429 |
| BsiSI | CCGG | 1 cut(s) | 281 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 336, 526 |
| BsmAI | GTCTC | 3 cut(s) | 78, 310, 535 |
| Bso31I | GGTCTC | 1 cut(s) | 535 |
| BsoBI | CYCGRG | 1 cut(s) | 429 |
| Bsp1286I | GDGCHC | 2 cut(s) | 10, 671 |
| Bsp143I | GATC | 4 cut(s) | 238, 424, 475, 516 |
| BspACI | CCGC | 1 cut(s) | 323 |
| BspCNI | CTCAG | 1 cut(s) | 417 |
| BspLI | GGNNCC | 3 cut(s) | 217, 617, 668 |
| BspPI | GGATC | 3 cut(s) | 419, 470, 511 |
| BspT107I | GGYRCC | 2 cut(s) | 615, 666 |
| BspTNI | GGTCTC | 1 cut(s) | 535 |
| BsrFI | RCCGGY | 1 cut(s) | 280 |
| BsrI | ACTGG | 2 cut(s) | 607, 634 |
| BssAI | RCCGGY | 1 cut(s) | 280 |
| BssECI | CCNNGG | 3 cut(s) | 428, 520, 521 |
| BssMI | GATC | 4 cut(s) | 238, 424, 475, 516 |
| Bst2UI | CCWGG | 1 cut(s) | 522 |
| Bst4CI | ACNGT | 1 cut(s) | 178 |
| Bst6I | CTCTTC | 2 cut(s) | 313, 415 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 27, 549, 620 |
| BstDEI | CTNAG | 2 cut(s) | 404, 513 |
| BstF5I | GGATG | 3 cut(s) | 44, 124, 454 |
| BstHHI | GCGC | 1 cut(s) | 679 |
| BstKTI | GATC | 4 cut(s) | 241, 427, 478, 519 |
| BstMAI | GTCTC | 3 cut(s) | 78, 310, 535 |
| BstMBI | GATC | 4 cut(s) | 238, 424, 475, 516 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 624 |
| BstNI | CCWGG | 1 cut(s) | 522 |
| BstNSI | RCATGY | 1 cut(s) | 656 |
| BstSCI | CCNGG | 1 cut(s) | 520 |
| BstSLI | GKGCMC | 1 cut(s) | 671 |
| BstV1I | GCAGC | 1 cut(s) | 271 |
| BstX2I | RGATCY | 2 cut(s) | 424, 516 |
| BstYI | RGATCY | 2 cut(s) | 424, 516 |
| BsuI | GTATCC | 1 cut(s) | 319 |
| BtsCI | GGATG | 3 cut(s) | 44, 124, 454 |
| BtsIMutI | CAGTG | 1 cut(s) | 248 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 27, 549, 620 |
| CfoI | GCGC | 1 cut(s) | 679 |
| Cfr10I | RCCGGY | 1 cut(s) | 280 |
| CviAII | CATG | 2 cut(s) | 150, 653 |
| CviJI | RGCY | 6 cut(s) | 89, 170, 188, 284, 512, 551 |
| CviKI_1 | RGCY | 6 cut(s) | 89, 170, 188, 284, 512, 551 |
| DdeI | CTNAG | 2 cut(s) | 404, 513 |
| DpnI | GATC | 4 cut(s) | 240, 426, 477, 518 |
| DpnII | GATC | 4 cut(s) | 238, 424, 475, 516 |
| Eam1104I | CTCTTC | 2 cut(s) | 313, 415 |
| EarI | CTCTTC | 2 cut(s) | 313, 415 |
| Eco31I | GGTCTC | 1 cut(s) | 535 |
| Eco57I | CTGAAG | 1 cut(s) | 167 |
| Eco88I | CYCGRG | 1 cut(s) | 429 |
| EcoRII | CCWGG | 1 cut(s) | 520 |
| EcoT22I | ATGCAT | 2 cut(s) | 151, 454 |
| FaeI | CATG | 2 cut(s) | 153, 656 |
| FatI | CATG | 2 cut(s) | 149, 652 |
| FauNDI | CATATG | 1 cut(s) | 145 |
| FbaI | TGATCA | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 1 cut(s) | 285 |
| FokI | GGATG | 3 cut(s) | 51, 131, 461 |
| Fsp4HI | GCNGC | 1 cut(s) | 285 |
| FspBI | CTAG | 3 cut(s) | 90, 171, 573 |
| FspI | TGCGCA | 1 cut(s) | 678 |
| GlaI | GCGC | 1 cut(s) | 678 |
| GluI | GCNGC | 1 cut(s) | 285 |
| HapII | CCGG | 1 cut(s) | 281 |
| HhaI | GCGC | 1 cut(s) | 679 |
| Hin1II | CATG | 2 cut(s) | 153, 656 |
| Hin6I | GCGC | 1 cut(s) | 677 |
| HinP1I | GCGC | 1 cut(s) | 677 |
| HindIII | AAGCTT | 1 cut(s) | 549 |
| HinfI | GANTC | 2 cut(s) | 134, 247 |
| HpaII | CCGG | 1 cut(s) | 281 |
| HphI | GGTGA | 4 cut(s) | 451, 485, 617, 623 |
| Hpy166II | GTNNAC | 1 cut(s) | 278 |
| Hpy188I | TCNGA | 1 cut(s) | 102 |
| Hpy188III | TCNNGA | 3 cut(s) | 371, 431, 493 |
| Hpy8I | GTNNAC | 1 cut(s) | 278 |
| HpyAV | CCTTC | 3 cut(s) | 191, 334, 520 |
| HpyCH4III | ACNGT | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 5 cut(s) | 29, 122, 149, 355, 452 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 624 |
| HpyF3I | CTNAG | 2 cut(s) | 404, 513 |
| Hsp92II | CATG | 2 cut(s) | 153, 656 |
| HspAI | GCGC | 1 cut(s) | 677 |
| Ksp22I | TGATCA | 1 cut(s) | 238 |
| Kzo9I | GATC | 4 cut(s) | 238, 424, 475, 516 |
| LmnI | GCTCC | 1 cut(s) | 700 |
| Lsp1109I | GCAGC | 1 cut(s) | 271 |
| LweI | GCATC | 4 cut(s) | 109, 310, 373, 439 |
| MaeI | CTAG | 3 cut(s) | 90, 171, 573 |
| MaeIII | GTNAC | 4 cut(s) | 290, 498, 564, 629 |
| MalI | GATC | 4 cut(s) | 240, 426, 477, 518 |
| MboI | GATC | 4 cut(s) | 238, 424, 475, 516 |
| MboII | GAAGA | 3 cut(s) | 300, 392, 432 |
| MfeI | CAATTG | 1 cut(s) | 252 |
| MflI | RGATCY | 2 cut(s) | 424, 516 |
| MhlI | GDGCHC | 2 cut(s) | 10, 671 |
| MluCI | AATT | 3 cut(s) | 13, 61, 252 |
| MmeI | TCCRAC | 2 cut(s) | 317, 628 |
| MnlI | CCTC | 9 cut(s) | 36, 151, 229, 273, 427, 438, 472, 475, 708 |
| Mph1103I | ATGCAT | 2 cut(s) | 151, 454 |
| MseI | TTAA | 3 cut(s) | 47, 225, 297 |
| MslI | CAYNNNNRTG | 1 cut(s) | 148 |
| MspI | CCGG | 1 cut(s) | 281 |
| MspR9I | CCNGG | 1 cut(s) | 522 |
| MunI | CAATTG | 1 cut(s) | 252 |
| MvaI | CCWGG | 1 cut(s) | 522 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 624 |
| NdeI | CATATG | 1 cut(s) | 145 |
| NdeII | GATC | 4 cut(s) | 238, 424, 475, 516 |
| NlaIII | CATG | 2 cut(s) | 153, 656 |
| NlaIV | GGNNCC | 3 cut(s) | 217, 617, 668 |
| NmuCI | GTSAC | 2 cut(s) | 498, 629 |
| NsbI | TGCGCA | 1 cut(s) | 678 |
| NsiI | ATGCAT | 2 cut(s) | 151, 454 |
| NspI | RCATGY | 1 cut(s) | 656 |
| PasI | CCCWGGG | 1 cut(s) | 521 |
| PciI | ACATGT | 1 cut(s) | 652 |
| PfeI | GAWTC | 2 cut(s) | 134, 247 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 336 |
| PkrI | GCNGC | 1 cut(s) | 286 |
| PscI | ACATGT | 1 cut(s) | 652 |
| Psp6I | CCWGG | 1 cut(s) | 520 |
| PspGI | CCWGG | 1 cut(s) | 520 |
| PspN4I | GGNNCC | 3 cut(s) | 217, 617, 668 |
| PsuI | RGATCY | 2 cut(s) | 424, 516 |
| RseI | CAYNNNNRTG | 1 cut(s) | 148 |
| SaqAI | TTAA | 3 cut(s) | 47, 225, 297 |
| SatI | GCNGC | 1 cut(s) | 285 |
| Sau3AI | GATC | 4 cut(s) | 238, 424, 475, 516 |
| ScrFI | CCNGG | 1 cut(s) | 522 |
| SduI | GDGCHC | 2 cut(s) | 10, 671 |
| SetI | ASST | 8 cut(s) | 47, 95, 172, 345, 438, 514, 531, 553 |
| SfaNI | GCATC | 4 cut(s) | 109, 310, 373, 439 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 148 |
| SmlI | CTYRAG | 2 cut(s) | 83, 369 |
| SmoI | CTYRAG | 2 cut(s) | 83, 369 |
| Sse9I | AATT | 3 cut(s) | 13, 61, 252 |
| SsiI | CCGC | 1 cut(s) | 323 |
| SspMI | CTAG | 3 cut(s) | 90, 171, 573 |
| StyD4I | CCNGG | 1 cut(s) | 520 |
| TaaI | ACNGT | 1 cut(s) | 178 |
| TasI | AATT | 3 cut(s) | 13, 61, 252 |
| TfiI | GAWTC | 2 cut(s) | 134, 247 |
| Tru1I | TTAA | 3 cut(s) | 47, 225, 297 |
| Tru9I | TTAA | 3 cut(s) | 47, 225, 297 |
| TscAI | CASTG | 1 cut(s) | 248 |
| TseFI | GTSAC | 2 cut(s) | 498, 629 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 2 cut(s) | 498, 629 |
| TspRI | CASTG | 1 cut(s) | 248 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 336 |
| XceI | RCATGY | 1 cut(s) | 656 |
| XspI | CTAG | 3 cut(s) | 90, 171, 573 |
| Zsp2I | ATGCAT | 2 cut(s) | 151, 454 |