Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 80 - 159 | 6.7e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 226, 417 |
| AclWI | GGATC | 3 cut(s) | 98, 111, 274 |
| AcsI | RAATTY | 1 cut(s) | 346 |
| AfaI | GTAC | 2 cut(s) | 149, 283 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 220, 221 |
| AgsI | TTSAA | 3 cut(s) | 68, 96, 487 |
| AluBI | AGCT | 3 cut(s) | 158, 251, 458 |
| AluI | AGCT | 3 cut(s) | 158, 251, 458 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AlwI | GGATC | 3 cut(s) | 98, 111, 274 |
| AoxI | GGCC | 1 cut(s) | 360 |
| ApeKI | GCWGC | 1 cut(s) | 455 |
| ApoI | RAATTY | 1 cut(s) | 346 |
| AspA2I | CCTAGG | 2 cut(s) | 107, 218 |
| AsuHPI | GGTGA | 3 cut(s) | 130, 301, 479 |
| AvrII | CCTAGG | 2 cut(s) | 107, 218 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 273, 306 |
| BamHI | GGATCC | 1 cut(s) | 103 |
| BbvCI | CCTCAGC | 1 cut(s) | 389 |
| BbvI | GCAGC | 1 cut(s) | 467 |
| BccI | CCATC | 1 cut(s) | 117 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 2 cut(s) | 108, 219 |
| BisI | GCNGC | 1 cut(s) | 456 |
| BlnI | CCTAGG | 2 cut(s) | 107, 218 |
| BlsI | GCNGC | 1 cut(s) | 457 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BpmI | CTGGAG | 1 cut(s) | 26 |
| Bpu10I | CCTNAGC | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 3 cut(s) | 107, 218, 363 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 220, 221 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| BseDI | CCNNGG | 3 cut(s) | 107, 218, 363 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 220, 221 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BseMII | CTCAG | 1 cut(s) | 380 |
| BseRI | GAGGAG | 2 cut(s) | 288, 406 |
| BseXI | GCAGC | 1 cut(s) | 467 |
| BshFI | GGCC | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 220, 221 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsmBI | CGTCTC | 1 cut(s) | 107 |
| BsnI | GGCC | 1 cut(s) | 362 |
| Bsp143I | GATC | 2 cut(s) | 103, 266 |
| BspANI | GGCC | 1 cut(s) | 362 |
| BspCNI | CTCAG | 1 cut(s) | 381 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BspPI | GGATC | 3 cut(s) | 98, 111, 274 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BssECI | CCNNGG | 3 cut(s) | 107, 218, 363 |
| BssMI | GATC | 2 cut(s) | 103, 266 |
| BssT1I | CCWWGG | 2 cut(s) | 107, 218 |
| Bst4CI | ACNGT | 3 cut(s) | 118, 467, 476 |
| BstC8I | GCNNGC | 2 cut(s) | 156, 376 |
| BstDEI | CTNAG | 1 cut(s) | 389 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 2 cut(s) | 106, 269 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 2 cut(s) | 103, 266 |
| BstNSI | RCATGY | 1 cut(s) | 378 |
| BstV1I | GCAGC | 1 cut(s) | 467 |
| BstX2I | RGATCY | 1 cut(s) | 103 |
| BstYI | RGATCY | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 362 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| BtsI | GCAGTG | 1 cut(s) | 405 |
| BtsIMutI | CAGTG | 3 cut(s) | 333, 405, 481 |
| Cac8I | GCNNGC | 2 cut(s) | 156, 376 |
| Csp6I | GTAC | 2 cut(s) | 148, 282 |
| CviAII | CATG | 1 cut(s) | 375 |
| CviJI | RGCY | 7 cut(s) | 158, 251, 306, 362, 368, 388, 458 |
| CviKI_1 | RGCY | 7 cut(s) | 158, 251, 306, 362, 368, 388, 458 |
| CviQI | GTAC | 2 cut(s) | 148, 282 |
| DdeI | CTNAG | 1 cut(s) | 389 |
| DpnI | GATC | 2 cut(s) | 105, 268 |
| DpnII | GATC | 2 cut(s) | 103, 266 |
| DraI | TTTAAA | 1 cut(s) | 345 |
| Eco130I | CCWWGG | 2 cut(s) | 107, 218 |
| EcoT14I | CCWWGG | 2 cut(s) | 107, 218 |
| ErhI | CCWWGG | 2 cut(s) | 107, 218 |
| Esp3I | CGTCTC | 1 cut(s) | 107 |
| FaeI | CATG | 1 cut(s) | 378 |
| FaiI | YATR | 5 cut(s) | 44, 255, 356, 371, 376 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 147, 179 |
| FatI | CATG | 1 cut(s) | 374 |
| FblI | GTMKAC | 2 cut(s) | 226, 417 |
| Fnu4HI | GCNGC | 1 cut(s) | 456 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 1 cut(s) | 456 |
| FspBI | CTAG | 2 cut(s) | 108, 219 |
| GluI | GCNGC | 1 cut(s) | 456 |
| GsuI | CTGGAG | 1 cut(s) | 26 |
| HaeIII | GGCC | 1 cut(s) | 362 |
| Hin1II | CATG | 1 cut(s) | 378 |
| HincII | GTYRAC | 1 cut(s) | 418 |
| HindII | GTYRAC | 1 cut(s) | 418 |
| HphI | GGTGA | 3 cut(s) | 130, 301, 479 |
| Hpy166II | GTNNAC | 2 cut(s) | 227, 418 |
| Hpy188I | TCNGA | 1 cut(s) | 462 |
| Hpy188III | TCNNGA | 2 cut(s) | 96, 270 |
| Hpy8I | GTNNAC | 2 cut(s) | 227, 418 |
| Hpy99I | CGWCG | 1 cut(s) | 248 |
| HpyAV | CCTTC | 1 cut(s) | 295 |
| HpyCH4III | ACNGT | 3 cut(s) | 118, 467, 476 |
| HpyCH4IV | ACGT | 2 cut(s) | 70, 284 |
| HpyCH4V | TGCA | 1 cut(s) | 378 |
| HpyF3I | CTNAG | 1 cut(s) | 389 |
| HpySE526I | ACGT | 2 cut(s) | 70, 284 |
| Hsp92II | CATG | 1 cut(s) | 378 |
| Kzo9I | GATC | 2 cut(s) | 103, 266 |
| LmnI | GCTCC | 1 cut(s) | 248 |
| LpnPI | CCDG | 3 cut(s) | 37, 344, 434 |
| Lsp1109I | GCAGC | 1 cut(s) | 467 |
| MaeI | CTAG | 2 cut(s) | 108, 219 |
| MaeII | ACGT | 2 cut(s) | 70, 284 |
| MaeIII | GTNAC | 2 cut(s) | 71, 476 |
| MalI | GATC | 2 cut(s) | 105, 268 |
| MboI | GATC | 2 cut(s) | 103, 266 |
| MflI | RGATCY | 1 cut(s) | 103 |
| MluCI | AATT | 3 cut(s) | 57, 346, 493 |
| MmeI | TCCRAC | 1 cut(s) | 120 |
| MnlI | CCTC | 8 cut(s) | 25, 195, 225, 251, 253, 266, 358, 384 |
| MseI | TTAA | 2 cut(s) | 312, 344 |
| NdeII | GATC | 2 cut(s) | 103, 266 |
| NlaIII | CATG | 1 cut(s) | 378 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NmeAIII | GCCGAG | 1 cut(s) | 388 |
| NmuCI | GTSAC | 1 cut(s) | 476 |
| NspI | RCATGY | 1 cut(s) | 378 |
| PaeI | GCATGC | 1 cut(s) | 378 |
| PkrI | GCNGC | 1 cut(s) | 457 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PsuI | RGATCY | 1 cut(s) | 103 |
| RsaI | GTAC | 2 cut(s) | 149, 283 |
| RsaNI | GTAC | 2 cut(s) | 148, 282 |
| SalI | GTCGAC | 1 cut(s) | 416 |
| SaqAI | TTAA | 2 cut(s) | 312, 344 |
| SatI | GCNGC | 1 cut(s) | 456 |
| Sau3AI | GATC | 2 cut(s) | 103, 266 |
| SetI | ASST | 9 cut(s) | 36, 73, 160, 206, 243, 253, 287, 412, 460 |
| SmiI | ATTTAAAT | 1 cut(s) | 345 |
| SphI | GCATGC | 1 cut(s) | 378 |
| Sse9I | AATT | 3 cut(s) | 57, 346, 493 |
| SspMI | CTAG | 2 cut(s) | 108, 219 |
| StyI | CCWWGG | 2 cut(s) | 107, 218 |
| SwaI | ATTTAAAT | 1 cut(s) | 345 |
| TaaI | ACNGT | 3 cut(s) | 118, 467, 476 |
| TaiI | ACGT | 2 cut(s) | 73, 287 |
| TaqI | TCGA | 2 cut(s) | 243, 417 |
| TasI | AATT | 3 cut(s) | 57, 346, 493 |
| TatI | WGTACW | 1 cut(s) | 147 |
| Tru1I | TTAA | 2 cut(s) | 312, 344 |
| Tru9I | TTAA | 2 cut(s) | 312, 344 |
| TscAI | CASTG | 3 cut(s) | 333, 405, 481 |
| TseFI | GTSAC | 1 cut(s) | 476 |
| TseI | GCWGC | 1 cut(s) | 455 |
| Tsp45I | GTSAC | 1 cut(s) | 476 |
| TspGWI | ACGGA | 3 cut(s) | 261, 279, 495 |
| TspRI | CASTG | 3 cut(s) | 333, 405, 481 |
| XapI | RAATTY | 1 cut(s) | 346 |
| XceI | RCATGY | 1 cut(s) | 378 |
| XmaJI | CCTAGG | 2 cut(s) | 107, 218 |
| XmiI | GTMKAC | 2 cut(s) | 226, 417 |
| XspI | CTAG | 2 cut(s) | 108, 219 |