Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 922 |
| AccBSI | CCGCTC | 1 cut(s) | 920 |
| AciI | CCGC | 2 cut(s) | 11, 920 |
| AclWI | GGATC | 1 cut(s) | 605 |
| AcsI | RAATTY | 2 cut(s) | 337, 550 |
| AcuI | CTGAAG | 1 cut(s) | 680 |
| AfaI | GTAC | 1 cut(s) | 937 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 352, 469, 581, 634, 932 |
| AgsI | TTSAA | 6 cut(s) | 44, 80, 375, 421, 457, 989 |
| AjnI | CCWGG | 2 cut(s) | 58, 732 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 236, 268 |
| AluBI | AGCT | 8 cut(s) | 67, 76, 100, 151, 476, 728, 955, 1018 |
| AluI | AGCT | 8 cut(s) | 67, 76, 100, 151, 476, 728, 955, 1018 |
| Alw21I | GWGCWC | 1 cut(s) | 730 |
| Alw26I | GTCTC | 2 cut(s) | 522, 855 |
| AlwI | GGATC | 1 cut(s) | 605 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 432 |
| Ama87I | CYCGRG | 1 cut(s) | 521 |
| ApeKI | GCWGC | 3 cut(s) | 73, 133, 473 |
| ApoI | RAATTY | 2 cut(s) | 337, 550 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 341 |
| AspS9I | GGNCC | 3 cut(s) | 227, 638, 1027 |
| AsuC2I | CCSGG | 1 cut(s) | 933 |
| AsuHPI | GGTGA | 3 cut(s) | 188, 694, 722 |
| AvaI | CYCGRG | 1 cut(s) | 521 |
| AvaII | GGWCC | 3 cut(s) | 227, 638, 1027 |
| BanI | GGYRCC | 1 cut(s) | 922 |
| BanII | GRGCYC | 1 cut(s) | 730 |
| Bbv12I | GWGCWC | 1 cut(s) | 730 |
| BbvI | GCAGC | 3 cut(s) | 85, 145, 485 |
| BccI | CCATC | 2 cut(s) | 170, 740 |
| BciT130I | CCWGG | 2 cut(s) | 60, 734 |
| BciVI | GTATCC | 1 cut(s) | 339 |
| BcnI | CCSGG | 1 cut(s) | 933 |
| BcoDI | GTCTC | 2 cut(s) | 522, 855 |
| BfaI | CTAG | 3 cut(s) | 290, 710, 1019 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BfuI | GTATCC | 1 cut(s) | 339 |
| BglII | AGATCT | 1 cut(s) | 199 |
| BisI | GCNGC | 4 cut(s) | 74, 134, 474, 921 |
| BlsI | GCNGC | 4 cut(s) | 75, 135, 475, 922 |
| Bme1390I | CCNGG | 3 cut(s) | 60, 734, 933 |
| Bme18I | GGWCC | 3 cut(s) | 227, 638, 1027 |
| BmeT110I | CYCGRG | 1 cut(s) | 521 |
| BmgT120I | GGNCC | 3 cut(s) | 227, 638, 1027 |
| BmiI | GGNNCC | 3 cut(s) | 639, 795, 924 |
| BmrFI | CCNGG | 3 cut(s) | 60, 734, 933 |
| BmsI | GCATC | 1 cut(s) | 145 |
| BpmI | CTGGAG | 1 cut(s) | 998 |
| Bpu10I | CCTNAGC | 1 cut(s) | 927 |
| BpuEI | CTTGAG | 1 cut(s) | 148 |
| BpuMI | CCSGG | 1 cut(s) | 933 |
| BsaJI | CCNNGG | 2 cut(s) | 59, 628 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 352, 469, 581, 634, 932 |
| BseBI | CCWGG | 2 cut(s) | 60, 734 |
| BseDI | CCNNGG | 2 cut(s) | 59, 628 |
| BseGI | GGATG | 2 cut(s) | 624, 850 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 352, 469, 581, 634, 932 |
| BseMII | CTCAG | 5 cut(s) | 78, 197, 324, 341, 666 |
| BseRI | GAGGAG | 1 cut(s) | 590 |
| BseXI | GCAGC | 3 cut(s) | 85, 145, 485 |
| BseYI | CCCAGC | 2 cut(s) | 633, 824 |
| BsgI | GTGCAG | 1 cut(s) | 92 |
| BshNI | GGYRCC | 1 cut(s) | 922 |
| BsiHKAI | GWGCWC | 1 cut(s) | 730 |
| BsiHKCI | CYCGRG | 1 cut(s) | 521 |
| BsiSI | CCGG | 1 cut(s) | 932 |
| BslFI | GGGAC | 2 cut(s) | 275, 651 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 352, 469, 581, 634, 932 |
| BsmAI | GTCTC | 2 cut(s) | 522, 855 |
| BsmFI | GGGAC | 2 cut(s) | 275, 651 |
| BsoBI | CYCGRG | 1 cut(s) | 521 |
| Bsp1286I | GDGCHC | 1 cut(s) | 730 |
| Bsp143I | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| BspACI | CCGC | 2 cut(s) | 11, 920 |
| BspCNI | CTCAG | 5 cut(s) | 79, 198, 325, 342, 667 |
| BspLI | GGNNCC | 3 cut(s) | 639, 795, 924 |
| BspPI | GGATC | 1 cut(s) | 605 |
| BspT107I | GGYRCC | 1 cut(s) | 922 |
| BsrBI | CCGCTC | 1 cut(s) | 920 |
| BssECI | CCNNGG | 2 cut(s) | 59, 628 |
| BssMI | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| BssT1I | CCWWGG | 1 cut(s) | 628 |
| Bst2UI | CCWGG | 2 cut(s) | 60, 734 |
| Bst4CI | ACNGT | 2 cut(s) | 516, 806 |
| BstC8I | GCNNGC | 2 cut(s) | 503, 882 |
| BstDEI | CTNAG | 7 cut(s) | 87, 206, 333, 350, 675, 715, 927 |
| BstF5I | GGATG | 2 cut(s) | 624, 850 |
| BstKTI | GATC | 5 cut(s) | 202, 274, 598, 613, 709 |
| BstMAI | GTCTC | 2 cut(s) | 522, 855 |
| BstMBI | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 64, 73, 459, 961 |
| BstNI | CCWGG | 2 cut(s) | 60, 734 |
| BstNSI | RCATGY | 1 cut(s) | 505 |
| BstSCI | CCNGG | 3 cut(s) | 58, 732, 931 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstV1I | GCAGC | 3 cut(s) | 85, 145, 485 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BsuI | GTATCC | 1 cut(s) | 339 |
| BtgZI | GCGATG | 1 cut(s) | 845 |
| BtsCI | GGATG | 2 cut(s) | 624, 850 |
| Cac8I | GCNNGC | 2 cut(s) | 503, 882 |
| CaiI | CAGNNNCTG | 1 cut(s) | 432 |
| Cfr13I | GGNCC | 3 cut(s) | 227, 638, 1027 |
| CsiI | ACCWGGT | 1 cut(s) | 732 |
| Csp6I | GTAC | 1 cut(s) | 936 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 154, 189 |
| CviAII | CATG | 5 cut(s) | 185, 362, 502, 506, 704 |
| CviQI | GTAC | 1 cut(s) | 936 |
| DdeI | CTNAG | 7 cut(s) | 87, 206, 333, 350, 675, 715, 927 |
| DpnI | GATC | 5 cut(s) | 201, 273, 597, 612, 708 |
| DpnII | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| Ecl136II | GAGCTC | 1 cut(s) | 728 |
| Eco130I | CCWWGG | 1 cut(s) | 628 |
| Eco24I | GRGCYC | 1 cut(s) | 730 |
| Eco47I | GGWCC | 3 cut(s) | 227, 638, 1027 |
| Eco53kI | GAGCTC | 1 cut(s) | 728 |
| Eco57I | CTGAAG | 1 cut(s) | 680 |
| Eco88I | CYCGRG | 1 cut(s) | 521 |
| EcoICRI | GAGCTC | 1 cut(s) | 728 |
| EcoRII | CCWGG | 2 cut(s) | 58, 732 |
| EcoT14I | CCWWGG | 1 cut(s) | 628 |
| EcoT22I | ATGCAT | 1 cut(s) | 507 |
| EcoT38I | GRGCYC | 1 cut(s) | 730 |
| ErhI | CCWWGG | 1 cut(s) | 628 |
| FaeI | CATG | 5 cut(s) | 188, 365, 505, 509, 707 |
| FaqI | GGGAC | 2 cut(s) | 275, 651 |
| FatI | CATG | 5 cut(s) | 184, 361, 501, 505, 703 |
| Fnu4HI | GCNGC | 4 cut(s) | 74, 134, 474, 921 |
| FokI | GGATG | 2 cut(s) | 611, 857 |
| FriOI | GRGCYC | 1 cut(s) | 730 |
| Fsp4HI | GCNGC | 4 cut(s) | 74, 134, 474, 921 |
| FspBI | CTAG | 3 cut(s) | 290, 710, 1019 |
| GluI | GCNGC | 4 cut(s) | 74, 134, 474, 921 |
| GsaI | CCCAGC | 2 cut(s) | 637, 828 |
| GsuI | CTGGAG | 1 cut(s) | 998 |
| HapII | CCGG | 1 cut(s) | 932 |
| Hin1II | CATG | 5 cut(s) | 188, 365, 505, 509, 707 |
| HindIII | AAGCTT | 1 cut(s) | 65 |
| HinfI | GANTC | 4 cut(s) | 20, 83, 429, 848 |
| HpaII | CCGG | 1 cut(s) | 932 |
| HphI | GGTGA | 3 cut(s) | 188, 694, 722 |
| Hpy166II | GTNNAC | 3 cut(s) | 227, 410, 512 |
| Hpy188I | TCNGA | 8 cut(s) | 88, 199, 207, 351, 428, 610, 699, 942 |
| Hpy8I | GTNNAC | 3 cut(s) | 227, 410, 512 |
| HpyAV | CCTTC | 6 cut(s) | 243, 314, 356, 473, 673, 1018 |
| HpyCH4III | ACNGT | 2 cut(s) | 516, 806 |
| HpyCH4V | TGCA | 5 cut(s) | 73, 158, 314, 501, 505 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 64, 73, 459, 961 |
| HpyF3I | CTNAG | 7 cut(s) | 87, 206, 333, 350, 675, 715, 927 |
| Hsp92II | CATG | 5 cut(s) | 188, 365, 505, 509, 707 |
| Kzo9I | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| LmnI | GCTCC | 2 cut(s) | 148, 799 |
| Lsp1109I | GCAGC | 3 cut(s) | 85, 145, 485 |
| LweI | GCATC | 1 cut(s) | 145 |
| MabI | ACCWGGT | 1 cut(s) | 732 |
| MaeI | CTAG | 3 cut(s) | 290, 710, 1019 |
| MaeIII | GTNAC | 2 cut(s) | 682, 778 |
| MalI | GATC | 5 cut(s) | 201, 273, 597, 612, 708 |
| MbiI | CCGCTC | 1 cut(s) | 920 |
| MboI | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| MboII | GAAGA | 4 cut(s) | 194, 686, 755, 1058 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MhlI | GDGCHC | 1 cut(s) | 730 |
| MluCI | AATT | 6 cut(s) | 321, 337, 375, 543, 550, 799 |
| MlyI | GAGTC | 3 cut(s) | 92, 423, 857 |
| MmeI | TCCRAC | 1 cut(s) | 267 |
| MnlI | CCTC | 9 cut(s) | 123, 201, 269, 345, 408, 611, 693, 988, 1022 |
| Mph1103I | ATGCAT | 1 cut(s) | 507 |
| MroXI | GAANNNNTTC | 1 cut(s) | 341 |
| MseI | TTAA | 6 cut(s) | 324, 378, 527, 546, 875, 969 |
| MslI | CAYNNNNRTG | 1 cut(s) | 366 |
| MspI | CCGG | 1 cut(s) | 932 |
| MspR9I | CCNGG | 3 cut(s) | 60, 734, 933 |
| MvaI | CCWGG | 2 cut(s) | 60, 734 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 64, 73, 459, 961 |
| NciI | CCSGG | 1 cut(s) | 933 |
| NdeII | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| NlaIII | CATG | 5 cut(s) | 188, 365, 505, 509, 707 |
| NlaIV | GGNNCC | 3 cut(s) | 639, 795, 924 |
| NmuCI | GTSAC | 1 cut(s) | 682 |
| NsiI | ATGCAT | 1 cut(s) | 507 |
| NspI | RCATGY | 1 cut(s) | 505 |
| PaeI | GCATGC | 1 cut(s) | 505 |
| PdmI | GAANNNNTTC | 1 cut(s) | 341 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PkrI | GCNGC | 4 cut(s) | 75, 135, 475, 922 |
| PleI | GAGTC | 3 cut(s) | 91, 423, 856 |
| PpsI | GAGTC | 3 cut(s) | 91, 423, 856 |
| Psp124BI | GAGCTC | 1 cut(s) | 730 |
| Psp6I | CCWGG | 2 cut(s) | 58, 732 |
| PspFI | CCCAGC | 2 cut(s) | 633, 824 |
| PspGI | CCWGG | 2 cut(s) | 58, 732 |
| PspN4I | GGNNCC | 3 cut(s) | 639, 795, 924 |
| PspPI | GGNCC | 3 cut(s) | 227, 638, 1027 |
| PstNI | CAGNNNCTG | 1 cut(s) | 432 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| RsaI | GTAC | 1 cut(s) | 937 |
| RsaNI | GTAC | 1 cut(s) | 936 |
| RseI | CAYNNNNRTG | 1 cut(s) | 366 |
| SacI | GAGCTC | 1 cut(s) | 730 |
| SaqAI | TTAA | 6 cut(s) | 324, 378, 527, 546, 875, 969 |
| SatI | GCNGC | 4 cut(s) | 74, 134, 474, 921 |
| Sau3AI | GATC | 5 cut(s) | 199, 271, 595, 610, 706 |
| Sau96I | GGNCC | 3 cut(s) | 227, 638, 1027 |
| SchI | GAGTC | 3 cut(s) | 92, 423, 857 |
| ScrFI | CCNGG | 3 cut(s) | 60, 734, 933 |
| SduI | GDGCHC | 1 cut(s) | 730 |
| SexAI | ACCWGGT | 1 cut(s) | 732 |
| SfaNI | GCATC | 1 cut(s) | 145 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| SinI | GGWCC | 3 cut(s) | 227, 638, 1027 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 366 |
| SmlI | CTYRAG | 1 cut(s) | 127 |
| SmoI | CTYRAG | 1 cut(s) | 127 |
| SphI | GCATGC | 1 cut(s) | 505 |
| Sse9I | AATT | 6 cut(s) | 321, 337, 375, 543, 550, 799 |
| SsiI | CCGC | 2 cut(s) | 11, 920 |
| SspMI | CTAG | 3 cut(s) | 290, 710, 1019 |
| SstI | GAGCTC | 1 cut(s) | 730 |
| StyD4I | CCNGG | 3 cut(s) | 58, 732, 931 |
| StyI | CCWWGG | 1 cut(s) | 628 |
| TaaI | ACNGT | 2 cut(s) | 516, 806 |
| TaqI | TCGA | 2 cut(s) | 274, 724 |
| TasI | AATT | 6 cut(s) | 321, 337, 375, 543, 550, 799 |
| TauI | GCSGC | 1 cut(s) | 923 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| Tru1I | TTAA | 6 cut(s) | 324, 378, 527, 546, 875, 969 |
| Tru9I | TTAA | 6 cut(s) | 324, 378, 527, 546, 875, 969 |
| TseFI | GTSAC | 1 cut(s) | 682 |
| TseI | GCWGC | 3 cut(s) | 73, 133, 473 |
| Tsp45I | GTSAC | 1 cut(s) | 682 |
| TspDTI | ATGAA | 3 cut(s) | 173, 501, 959 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| VpaK11BI | GGWCC | 3 cut(s) | 227, 638, 1027 |
| XapI | RAATTY | 2 cut(s) | 337, 550 |
| XbaI | TCTAGA | 1 cut(s) | 709 |
| XceI | RCATGY | 1 cut(s) | 505 |
| XmnI | GAANNNNTTC | 1 cut(s) | 341 |
| XspI | CTAG | 3 cut(s) | 290, 710, 1019 |
| Zsp2I | ATGCAT | 1 cut(s) | 507 |