Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 352 |
| Acc65I | GGTACC | 2 cut(s) | 425, 508 |
| AccB1I | GGYRCC | 2 cut(s) | 425, 508 |
| AccBSI | CCGCTC | 1 cut(s) | 1212 |
| AccII | CGCG | 4 cut(s) | 940, 945, 955, 1095 |
| AccIII | TCCGGA | 1 cut(s) | 409 |
| AclWI | GGATC | 4 cut(s) | 689, 730, 743, 804 |
| AcoI | YGGCCR | 1 cut(s) | 894 |
| AcsI | RAATTY | 1 cut(s) | 753 |
| AcyI | GRCGYC | 1 cut(s) | 911 |
| AfaI | GTAC | 6 cut(s) | 370, 427, 510, 847, 965, 1233 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 195, 859, 988, 1088 |
| AflIII | ACRYGT | 2 cut(s) | 494, 1188 |
| AgeI | ACCGGT | 1 cut(s) | 439 |
| AgsI | TTSAA | 6 cut(s) | 213, 356, 681, 704, 752, 761 |
| AjiI | CACGTC | 2 cut(s) | 495, 1189 |
| AjnI | CCWGG | 3 cut(s) | 488, 739, 1048 |
| AluBI | AGCT | 4 cut(s) | 248, 347, 719, 920 |
| AluI | AGCT | 4 cut(s) | 248, 347, 719, 920 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| Alw26I | GTCTC | 1 cut(s) | 300 |
| AlwI | GGATC | 4 cut(s) | 689, 730, 743, 804 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1240, 1289 |
| Ama87I | CYCGRG | 2 cut(s) | 648, 1127 |
| Aor13HI | TCCGGA | 1 cut(s) | 409 |
| AoxI | GGCC | 1 cut(s) | 894 |
| ApoI | RAATTY | 1 cut(s) | 753 |
| AseI | ATTAAT | 1 cut(s) | 206 |
| AsiGI | ACCGGT | 1 cut(s) | 439 |
| Asp718I | GGTACC | 2 cut(s) | 425, 508 |
| AspLEI | GCGC | 4 cut(s) | 884, 945, 955, 1033 |
| AspS9I | GGNCC | 2 cut(s) | 437, 1079 |
| AsuHPI | GGTGA | 3 cut(s) | 152, 704, 842 |
| AsuNHI | GCTAGC | 1 cut(s) | 184 |
| AvaI | CYCGRG | 2 cut(s) | 648, 1127 |
| AvaII | GGWCC | 2 cut(s) | 437, 1079 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 417, 450 |
| BalI | TGGCCA | 1 cut(s) | 896 |
| BamHI | GGATCC | 1 cut(s) | 735 |
| BanI | GGYRCC | 2 cut(s) | 425, 508 |
| BanII | GRGCYC | 2 cut(s) | 1224, 1261 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BccI | CCATC | 5 cut(s) | 307, 416, 473, 857, 1082 |
| BciT130I | CCWGG | 3 cut(s) | 490, 741, 1050 |
| BciVI | GTATCC | 1 cut(s) | 1140 |
| BcoDI | GTCTC | 1 cut(s) | 300 |
| BfaI | CTAG | 7 cut(s) | 185, 234, 249, 348, 431, 732, 1158 |
| BfoI | RGCGCY | 1 cut(s) | 1034 |
| BfuAI | ACCTGC | 1 cut(s) | 352 |
| BfuI | GTATCC | 1 cut(s) | 1140 |
| BisI | GCNGC | 2 cut(s) | 941, 951 |
| BlsI | GCNGC | 2 cut(s) | 942, 952 |
| Bme1390I | CCNGG | 3 cut(s) | 490, 741, 1050 |
| Bme18I | GGWCC | 2 cut(s) | 437, 1079 |
| BmeT110I | CYCGRG | 2 cut(s) | 648, 1127 |
| BmgBI | CACGTC | 2 cut(s) | 495, 1189 |
| BmgT120I | GGNCC | 2 cut(s) | 437, 1079 |
| BmiI | GGNNCC | 3 cut(s) | 427, 510, 737 |
| BmrFI | CCNGG | 3 cut(s) | 490, 741, 1050 |
| BmrI | ACTGGG | 1 cut(s) | 977 |
| BmsI | GCATC | 2 cut(s) | 52, 916 |
| BmtI | GCTAGC | 1 cut(s) | 188 |
| BmuI | ACTGGG | 1 cut(s) | 977 |
| BpmI | CTGGAG | 3 cut(s) | 472, 623, 936 |
| BsaBI | GATNNNNATC | 1 cut(s) | 42 |
| BsaHI | GRCGYC | 1 cut(s) | 911 |
| BsaJI | CCNNGG | 5 cut(s) | 98, 739, 740, 1049, 1126 |
| BsaWI | WCCGGW | 3 cut(s) | 409, 439, 889 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 757, 787 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 195, 859, 988, 1088 |
| Bse118I | RCCGGY | 2 cut(s) | 439, 1264 |
| Bse1I | ACTGG | 3 cut(s) | 339, 606, 983 |
| Bse8I | GATNNNNATC | 1 cut(s) | 42 |
| BseAI | TCCGGA | 1 cut(s) | 409 |
| BseBI | CCWGG | 3 cut(s) | 490, 741, 1050 |
| BseDI | CCNNGG | 5 cut(s) | 98, 739, 740, 1049, 1126 |
| BseGI | GGATG | 4 cut(s) | 123, 418, 868, 1093 |
| BseJI | GATNNNNATC | 1 cut(s) | 42 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 195, 859, 988, 1088 |
| BseNI | ACTGG | 3 cut(s) | 339, 606, 983 |
| BseRI | GAGGAG | 1 cut(s) | 592 |
| BseYI | CCCAGC | 1 cut(s) | 1067 |
| BsgI | GTGCAG | 1 cut(s) | 486 |
| Bsh1236I | CGCG | 4 cut(s) | 940, 945, 955, 1095 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1104 |
| BshFI | GGCC | 1 cut(s) | 896 |
| BshNI | GGYRCC | 2 cut(s) | 425, 508 |
| BshTI | ACCGGT | 1 cut(s) | 439 |
| BsiEI | CGRYCG | 1 cut(s) | 1104 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BsiHKCI | CYCGRG | 2 cut(s) | 648, 1127 |
| BsiSI | CCGG | 4 cut(s) | 410, 440, 890, 1265 |
| BslFI | GGGAC | 3 cut(s) | 955, 964, 1041 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 195, 859, 988, 1088 |
| BsmAI | GTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 3 cut(s) | 955, 964, 1041 |
| BsmI | GAATGC | 1 cut(s) | 555 |
| BsnI | GGCC | 1 cut(s) | 896 |
| BsoBI | CYCGRG | 2 cut(s) | 648, 1127 |
| Bsp1286I | GDGCHC | 3 cut(s) | 58, 1224, 1261 |
| Bsp13I | TCCGGA | 1 cut(s) | 409 |
| Bsp143I | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| BspANI | GGCC | 1 cut(s) | 896 |
| BspEI | TCCGGA | 1 cut(s) | 409 |
| BspFNI | CGCG | 4 cut(s) | 940, 945, 955, 1095 |
| BspLI | GGNNCC | 3 cut(s) | 427, 510, 737 |
| BspMI | ACCTGC | 1 cut(s) | 352 |
| BspOI | GCTAGC | 1 cut(s) | 188 |
| BspPI | GGATC | 4 cut(s) | 689, 730, 743, 804 |
| BspT107I | GGYRCC | 2 cut(s) | 425, 508 |
| BsrBI | CCGCTC | 1 cut(s) | 1212 |
| BsrFI | RCCGGY | 2 cut(s) | 439, 1264 |
| BsrI | ACTGG | 3 cut(s) | 339, 606, 983 |
| BssAI | RCCGGY | 2 cut(s) | 439, 1264 |
| BssECI | CCNNGG | 5 cut(s) | 98, 739, 740, 1049, 1126 |
| BssMI | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| BssNI | GRCGYC | 1 cut(s) | 911 |
| BssT1I | CCWWGG | 1 cut(s) | 98 |
| Bst2UI | CCWGG | 3 cut(s) | 490, 741, 1050 |
| Bst4CI | ACNGT | 1 cut(s) | 1176 |
| Bst6I | CTCTTC | 1 cut(s) | 623 |
| BstACI | GRCGYC | 1 cut(s) | 911 |
| BstC8I | GCNNGC | 5 cut(s) | 186, 315, 345, 1046, 1266 |
| BstF5I | GGATG | 4 cut(s) | 123, 418, 868, 1093 |
| BstFNI | CGCG | 4 cut(s) | 940, 945, 955, 1095 |
| BstH2I | RGCGCY | 1 cut(s) | 1034 |
| BstHHI | GCGC | 4 cut(s) | 884, 945, 955, 1033 |
| BstKTI | GATC | 4 cut(s) | 697, 738, 799, 1018 |
| BstMAI | GTCTC | 1 cut(s) | 300 |
| BstMBI | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| BstMCI | CGRYCG | 1 cut(s) | 1104 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 185, 190, 917, 926, 1045, 1265 |
| BstNI | CCWGG | 3 cut(s) | 490, 741, 1050 |
| BstNSI | RCATGY | 1 cut(s) | 875 |
| BstSCI | CCNGG | 3 cut(s) | 488, 739, 1048 |
| BstUI | CGCG | 4 cut(s) | 940, 945, 955, 1095 |
| BstX2I | RGATCY | 1 cut(s) | 735 |
| BstYI | RGATCY | 1 cut(s) | 735 |
| BsuI | GTATCC | 1 cut(s) | 1140 |
| BsuRI | GGCC | 1 cut(s) | 896 |
| BtrI | CACGTC | 2 cut(s) | 495, 1189 |
| BtsCI | GGATG | 4 cut(s) | 123, 418, 868, 1093 |
| BtsI | GCAGTG | 1 cut(s) | 1275 |
| BtsIMutI | CAGTG | 2 cut(s) | 1181, 1275 |
| BveI | ACCTGC | 1 cut(s) | 352 |
| Cac8I | GCNNGC | 5 cut(s) | 186, 315, 345, 1046, 1266 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1240, 1289 |
| CfoI | GCGC | 4 cut(s) | 884, 945, 955, 1033 |
| Cfr10I | RCCGGY | 2 cut(s) | 439, 1264 |
| Cfr13I | GGNCC | 2 cut(s) | 437, 1079 |
| CseI | GACGC | 3 cut(s) | 900, 944, 946 |
| Csp6I | GTAC | 6 cut(s) | 369, 426, 509, 846, 964, 1232 |
| CspAI | ACCGGT | 1 cut(s) | 439 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 669, 704 |
| CviAII | CATG | 2 cut(s) | 728, 872 |
| CviQI | GTAC | 6 cut(s) | 369, 426, 509, 846, 964, 1232 |
| DpnI | GATC | 4 cut(s) | 696, 737, 798, 1017 |
| DpnII | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| DraI | TTTAAA | 2 cut(s) | 154, 244 |
| EaeI | YGGCCR | 1 cut(s) | 894 |
| Eam1104I | CTCTTC | 1 cut(s) | 623 |
| EarI | CTCTTC | 1 cut(s) | 623 |
| EciI | GGCGGA | 2 cut(s) | 214, 1159 |
| Eco130I | CCWWGG | 1 cut(s) | 98 |
| Eco24I | GRGCYC | 2 cut(s) | 1224, 1261 |
| Eco47I | GGWCC | 2 cut(s) | 437, 1079 |
| Eco88I | CYCGRG | 2 cut(s) | 648, 1127 |
| EcoRII | CCWGG | 3 cut(s) | 488, 739, 1048 |
| EcoT14I | CCWWGG | 1 cut(s) | 98 |
| EcoT38I | GRGCYC | 2 cut(s) | 1224, 1261 |
| ErhI | CCWWGG | 1 cut(s) | 98 |
| FaeI | CATG | 2 cut(s) | 731, 875 |
| FaqI | GGGAC | 3 cut(s) | 955, 964, 1041 |
| FatI | CATG | 2 cut(s) | 727, 871 |
| FauI | CCCGC | 3 cut(s) | 306, 1053, 1162 |
| Fnu4HI | GCNGC | 2 cut(s) | 941, 951 |
| FokI | GGATG | 4 cut(s) | 130, 425, 875, 1100 |
| FriOI | GRGCYC | 2 cut(s) | 1224, 1261 |
| Fsp4HI | GCNGC | 2 cut(s) | 941, 951 |
| FspBI | CTAG | 7 cut(s) | 185, 234, 249, 348, 431, 732, 1158 |
| GlaI | GCGC | 4 cut(s) | 883, 944, 954, 1032 |
| GluI | GCNGC | 2 cut(s) | 941, 951 |
| GsaI | CCCAGC | 1 cut(s) | 1071 |
| GsuI | CTGGAG | 3 cut(s) | 472, 623, 936 |
| HaeII | RGCGCY | 1 cut(s) | 1034 |
| HaeIII | GGCC | 1 cut(s) | 896 |
| HapII | CCGG | 4 cut(s) | 410, 440, 890, 1265 |
| HgaI | GACGC | 3 cut(s) | 900, 944, 946 |
| HhaI | GCGC | 4 cut(s) | 884, 945, 955, 1033 |
| Hin1I | GRCGYC | 1 cut(s) | 911 |
| Hin1II | CATG | 2 cut(s) | 731, 875 |
| Hin6I | GCGC | 4 cut(s) | 882, 943, 953, 1031 |
| HinP1I | GCGC | 4 cut(s) | 882, 943, 953, 1031 |
| HincII | GTYRAC | 1 cut(s) | 804 |
| HindII | GTYRAC | 1 cut(s) | 804 |
| HindIII | AAGCTT | 1 cut(s) | 717 |
| HinfI | GANTC | 6 cut(s) | 94, 406, 485, 565, 1054, 1132 |
| HpaI | GTTAAC | 1 cut(s) | 804 |
| HpaII | CCGG | 4 cut(s) | 410, 440, 890, 1265 |
| HphI | GGTGA | 3 cut(s) | 152, 704, 842 |
| Hpy166II | GTNNAC | 4 cut(s) | 452, 804, 846, 1186 |
| Hpy188I | TCNGA | 4 cut(s) | 925, 1087, 1112, 1285 |
| Hpy188III | TCNNGA | 5 cut(s) | 410, 650, 915, 934, 1129 |
| Hpy8I | GTNNAC | 4 cut(s) | 452, 804, 846, 1186 |
| HpyAV | CCTTC | 3 cut(s) | 228, 388, 1092 |
| HpyCH4III | ACNGT | 1 cut(s) | 1176 |
| HpyCH4IV | ACGT | 2 cut(s) | 494, 1188 |
| HpyCH4V | TGCA | 5 cut(s) | 43, 503, 555, 1243, 1301 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 185, 190, 917, 926, 1045, 1265 |
| HpySE526I | ACGT | 2 cut(s) | 494, 1188 |
| Hsp92I | GRCGYC | 1 cut(s) | 911 |
| Hsp92II | CATG | 2 cut(s) | 731, 875 |
| HspAI | GCGC | 4 cut(s) | 882, 943, 953, 1031 |
| Kpn2I | TCCGGA | 1 cut(s) | 409 |
| KpnI | GGTACC | 2 cut(s) | 429, 512 |
| KroI | GCCGGC | 1 cut(s) | 1264 |
| KroNI | GCCGGC | 1 cut(s) | 1266 |
| KspAI | GTTAAC | 1 cut(s) | 804 |
| Kzo9I | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| LmnI | GCTCC | 3 cut(s) | 376, 532, 917 |
| LweI | GCATC | 2 cut(s) | 52, 916 |
| MaeI | CTAG | 7 cut(s) | 185, 234, 249, 348, 431, 732, 1158 |
| MaeII | ACGT | 2 cut(s) | 494, 1188 |
| MalI | GATC | 4 cut(s) | 696, 737, 798, 1017 |
| MbiI | CCGCTC | 1 cut(s) | 1212 |
| MboI | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| MboII | GAAGA | 3 cut(s) | 103, 213, 640 |
| MflI | RGATCY | 1 cut(s) | 735 |
| MhlI | GDGCHC | 3 cut(s) | 58, 1224, 1261 |
| MlsI | TGGCCA | 1 cut(s) | 896 |
| MluNI | TGGCCA | 1 cut(s) | 896 |
| MlyI | GAGTC | 3 cut(s) | 479, 574, 1063 |
| Mox20I | TGGCCA | 1 cut(s) | 896 |
| MroI | TCCGGA | 1 cut(s) | 409 |
| MroNI | GCCGGC | 1 cut(s) | 1264 |
| MscI | TGGCCA | 1 cut(s) | 896 |
| MseI | TTAA | 6 cut(s) | 153, 206, 227, 243, 662, 803 |
| MslI | CAYNNNNRTG | 1 cut(s) | 855 |
| Msp20I | TGGCCA | 1 cut(s) | 896 |
| MspA1I | CMGCKG | 1 cut(s) | 961 |
| MspI | CCGG | 4 cut(s) | 410, 440, 890, 1265 |
| MspR9I | CCNGG | 3 cut(s) | 490, 741, 1050 |
| Mva1269I | GAATGC | 1 cut(s) | 555 |
| MvaI | CCWGG | 3 cut(s) | 490, 741, 1050 |
| MvnI | CGCG | 4 cut(s) | 940, 945, 955, 1095 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 185, 190, 917, 926, 1045, 1265 |
| NaeI | GCCGGC | 1 cut(s) | 1266 |
| NdeII | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| NgoMIV | GCCGGC | 1 cut(s) | 1264 |
| NheI | GCTAGC | 1 cut(s) | 184 |
| NlaIII | CATG | 2 cut(s) | 731, 875 |
| NlaIV | GGNNCC | 3 cut(s) | 427, 510, 737 |
| NspI | RCATGY | 1 cut(s) | 875 |
| PaeR7I | CTCGAG | 1 cut(s) | 648 |
| PasI | CCCWGGG | 1 cut(s) | 740 |
| PctI | GAATGC | 1 cut(s) | 555 |
| PdiI | GCCGGC | 1 cut(s) | 1266 |
| PfeI | GAWTC | 3 cut(s) | 94, 406, 1132 |
| PfoI | TCCNGGA | 1 cut(s) | 488 |
| PinAI | ACCGGT | 1 cut(s) | 439 |
| PkrI | GCNGC | 2 cut(s) | 942, 952 |
| PleI | GAGTC | 3 cut(s) | 479, 573, 1062 |
| PpsI | GAGTC | 3 cut(s) | 479, 573, 1062 |
| PshBI | ATTAAT | 1 cut(s) | 206 |
| Psp6I | CCWGG | 3 cut(s) | 488, 739, 1048 |
| PspFI | CCCAGC | 1 cut(s) | 1067 |
| PspGI | CCWGG | 3 cut(s) | 488, 739, 1048 |
| PspN4I | GGNNCC | 3 cut(s) | 427, 510, 737 |
| PspPI | GGNCC | 2 cut(s) | 437, 1079 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 426, 458 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1240, 1289 |
| PsuI | RGATCY | 1 cut(s) | 735 |
| RsaI | GTAC | 6 cut(s) | 370, 427, 510, 847, 965, 1233 |
| RsaNI | GTAC | 6 cut(s) | 369, 426, 509, 846, 964, 1232 |
| RseI | CAYNNNNRTG | 1 cut(s) | 855 |
| SaqAI | TTAA | 6 cut(s) | 153, 206, 227, 243, 662, 803 |
| SatI | GCNGC | 2 cut(s) | 941, 951 |
| Sau3AI | GATC | 4 cut(s) | 694, 735, 796, 1015 |
| Sau96I | GGNCC | 2 cut(s) | 437, 1079 |
| SchI | GAGTC | 3 cut(s) | 479, 574, 1063 |
| ScrFI | CCNGG | 3 cut(s) | 490, 741, 1050 |
| SduI | GDGCHC | 3 cut(s) | 58, 1224, 1261 |
| SfaNI | GCATC | 2 cut(s) | 52, 916 |
| Sfr274I | CTCGAG | 1 cut(s) | 648 |
| SinI | GGWCC | 2 cut(s) | 437, 1079 |
| SlaI | CTCGAG | 1 cut(s) | 648 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 855 |
| SmlI | CTYRAG | 1 cut(s) | 648 |
| SmoI | CTYRAG | 1 cut(s) | 648 |
| SspMI | CTAG | 7 cut(s) | 185, 234, 249, 348, 431, 732, 1158 |
| StyD4I | CCNGG | 3 cut(s) | 488, 739, 1048 |
| StyI | CCWWGG | 1 cut(s) | 98 |
| TaaI | ACNGT | 1 cut(s) | 1176 |
| TaiI | ACGT | 2 cut(s) | 497, 1191 |
| TaqI | TCGA | 2 cut(s) | 568, 649 |
| TatI | WGTACW | 2 cut(s) | 845, 1231 |
| TauI | GCSGC | 2 cut(s) | 943, 953 |
| TfiI | GAWTC | 3 cut(s) | 94, 406, 1132 |
| Tru1I | TTAA | 6 cut(s) | 153, 206, 227, 243, 662, 803 |
| Tru9I | TTAA | 6 cut(s) | 153, 206, 227, 243, 662, 803 |
| TscAI | CASTG | 2 cut(s) | 1181, 1275 |
| TspDTI | ATGAA | 3 cut(s) | 17, 96, 434 |
| TspGWI | ACGGA | 1 cut(s) | 1092 |
| TspRI | CASTG | 2 cut(s) | 1181, 1275 |
| VpaK11BI | GGWCC | 2 cut(s) | 437, 1079 |
| VspI | ATTAAT | 1 cut(s) | 206 |
| XapI | RAATTY | 1 cut(s) | 753 |
| XceI | RCATGY | 1 cut(s) | 875 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 306, 904 |
| XhoI | CTCGAG | 1 cut(s) | 648 |
| XspI | CTAG | 7 cut(s) | 185, 234, 249, 348, 431, 732, 1158 |