Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 352, 428 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 63 |
| AccIII | TCCGGA | 1 cut(s) | 259 |
| AciI | CCGC | 1 cut(s) | 164 |
| AclWI | GGATC | 1 cut(s) | 151 |
| AcsI | RAATTY | 3 cut(s) | 25, 167, 220 |
| AfaI | GTAC | 1 cut(s) | 442 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 63, 437 |
| AgsI | TTSAA | 1 cut(s) | 569 |
| AluBI | AGCT | 5 cut(s) | 197, 248, 485, 506, 786 |
| AluI | AGCT | 5 cut(s) | 197, 248, 485, 506, 786 |
| Alw26I | GTCTC | 1 cut(s) | 556 |
| AlwI | GGATC | 1 cut(s) | 151 |
| Aor13HI | TCCGGA | 1 cut(s) | 259 |
| ApeKI | GCWGC | 1 cut(s) | 783 |
| ApoI | RAATTY | 3 cut(s) | 25, 167, 220 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 749, 781 |
| AseI | ATTAAT | 1 cut(s) | 384 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 39 |
| AsuHPI | GGTGA | 2 cut(s) | 380, 403 |
| AxyI | CCTNAGG | 1 cut(s) | 129 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 585, 617 |
| BbsI | GAAGAC | 3 cut(s) | 42, 119, 600 |
| BbvI | GCAGC | 1 cut(s) | 795 |
| BccI | CCATC | 3 cut(s) | 271, 365, 533 |
| BclI | TGATCA | 1 cut(s) | 798 |
| BcoDI | GTCTC | 1 cut(s) | 556 |
| BfaI | CTAG | 3 cut(s) | 234, 411, 534 |
| BfmI | CTRYAG | 1 cut(s) | 810 |
| BfuAI | ACCTGC | 2 cut(s) | 352, 428 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 824 |
| BisI | GCNGC | 1 cut(s) | 784 |
| BlsI | GCNGC | 1 cut(s) | 785 |
| BmiI | GGNNCC | 1 cut(s) | 817 |
| BmsI | GCATC | 1 cut(s) | 388 |
| BpiI | GAAGAC | 3 cut(s) | 42, 119, 600 |
| Bpu10I | CCTNAGC | 1 cut(s) | 787 |
| BsaWI | WCCGGW | 1 cut(s) | 259 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 63, 437 |
| Bse1I | ACTGG | 1 cut(s) | 104 |
| Bse21I | CCTNAGG | 1 cut(s) | 129 |
| BseAI | TCCGGA | 1 cut(s) | 259 |
| BseGI | GGATG | 2 cut(s) | 282, 733 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 63, 437 |
| BseMII | CTCAG | 2 cut(s) | 801, 869 |
| BseNI | ACTGG | 1 cut(s) | 104 |
| BseXI | GCAGC | 1 cut(s) | 795 |
| BsiSI | CCGG | 1 cut(s) | 260 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 63, 437 |
| BsmAI | GTCTC | 1 cut(s) | 556 |
| Bsp13I | TCCGGA | 1 cut(s) | 259 |
| Bsp143I | GATC | 2 cut(s) | 143, 798 |
| BspACI | CCGC | 1 cut(s) | 164 |
| BspCNI | CTCAG | 2 cut(s) | 800, 868 |
| BspEI | TCCGGA | 1 cut(s) | 259 |
| BspLI | GGNNCC | 1 cut(s) | 817 |
| BspMI | ACCTGC | 2 cut(s) | 352, 428 |
| BspPI | GGATC | 1 cut(s) | 151 |
| BsrI | ACTGG | 1 cut(s) | 104 |
| BssMI | GATC | 2 cut(s) | 143, 798 |
| Bst4CI | ACNGT | 5 cut(s) | 48, 158, 590, 606, 779 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 2 cut(s) | 186, 250 |
| BstDEI | CTNAG | 4 cut(s) | 129, 517, 787, 855 |
| BstF5I | GGATG | 2 cut(s) | 282, 733 |
| BstKTI | GATC | 2 cut(s) | 146, 801 |
| BstMAI | GTCTC | 1 cut(s) | 556 |
| BstMBI | GATC | 2 cut(s) | 143, 798 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 185, 194, 518, 824 |
| BstNSI | RCATGY | 1 cut(s) | 868 |
| BstSFI | CTRYAG | 1 cut(s) | 810 |
| BstV1I | GCAGC | 1 cut(s) | 795 |
| BstV2I | GAAGAC | 3 cut(s) | 42, 119, 600 |
| Bsu36I | CCTNAGG | 1 cut(s) | 129 |
| BtsCI | GGATG | 2 cut(s) | 282, 733 |
| BtsIMutI | CAGTG | 2 cut(s) | 97, 784 |
| BveI | ACCTGC | 2 cut(s) | 352, 428 |
| Cac8I | GCNNGC | 2 cut(s) | 186, 250 |
| CseI | GACGC | 1 cut(s) | 779 |
| Csp6I | GTAC | 1 cut(s) | 441 |
| CviAII | CATG | 4 cut(s) | 309, 347, 509, 865 |
| CviQI | GTAC | 1 cut(s) | 441 |
| DdeI | CTNAG | 4 cut(s) | 129, 517, 787, 855 |
| DpnI | GATC | 2 cut(s) | 145, 800 |
| DpnII | GATC | 2 cut(s) | 143, 798 |
| DraI | TTTAAA | 1 cut(s) | 244 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| EciI | GGCGGA | 1 cut(s) | 179 |
| Eco81I | CCTNAGG | 1 cut(s) | 129 |
| FaeI | CATG | 4 cut(s) | 312, 350, 512, 868 |
| FatI | CATG | 4 cut(s) | 308, 346, 508, 864 |
| FbaI | TGATCA | 1 cut(s) | 798 |
| Fnu4HI | GCNGC | 1 cut(s) | 784 |
| FokI | GGATG | 2 cut(s) | 289, 740 |
| Fsp4HI | GCNGC | 1 cut(s) | 784 |
| FspBI | CTAG | 3 cut(s) | 234, 411, 534 |
| GluI | GCNGC | 1 cut(s) | 784 |
| HapII | CCGG | 1 cut(s) | 260 |
| HgaI | GACGC | 1 cut(s) | 779 |
| Hin1II | CATG | 4 cut(s) | 312, 350, 512, 868 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HindIII | AAGCTT | 1 cut(s) | 195 |
| HinfI | GANTC | 3 cut(s) | 406, 672, 806 |
| HpaI | GTTAAC | 1 cut(s) | 211 |
| HpaII | CCGG | 1 cut(s) | 260 |
| HphI | GGTGA | 2 cut(s) | 380, 403 |
| Hpy166II | GTNNAC | 2 cut(s) | 211, 586 |
| Hpy188I | TCNGA | 1 cut(s) | 803 |
| Hpy188III | TCNNGA | 4 cut(s) | 260, 274, 325, 676 |
| Hpy8I | GTNNAC | 2 cut(s) | 211, 586 |
| HpyAV | CCTTC | 5 cut(s) | 50, 309, 462, 464, 673 |
| HpyCH4III | ACNGT | 5 cut(s) | 48, 158, 590, 606, 779 |
| HpyCH4V | TGCA | 3 cut(s) | 123, 437, 610 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 185, 194, 518, 824 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 517, 787, 855 |
| Hsp92II | CATG | 4 cut(s) | 312, 350, 512, 868 |
| Kpn2I | TCCGGA | 1 cut(s) | 259 |
| Ksp22I | TGATCA | 1 cut(s) | 798 |
| KspAI | GTTAAC | 1 cut(s) | 211 |
| Kzo9I | GATC | 2 cut(s) | 143, 798 |
| LmnI | GCTCC | 2 cut(s) | 542, 815 |
| Lsp1109I | GCAGC | 1 cut(s) | 795 |
| LweI | GCATC | 1 cut(s) | 388 |
| MaeI | CTAG | 3 cut(s) | 234, 411, 534 |
| MaeIII | GTNAC | 2 cut(s) | 71, 391 |
| MalI | GATC | 2 cut(s) | 145, 800 |
| MboI | GATC | 2 cut(s) | 143, 798 |
| MboII | GAAGA | 4 cut(s) | 47, 124, 146, 605 |
| MfeI | CAATTG | 1 cut(s) | 14 |
| MluCI | AATT | 6 cut(s) | 14, 25, 106, 167, 220, 444 |
| MnlI | CCTC | 5 cut(s) | 130, 537, 643, 678, 707 |
| MroI | TCCGGA | 1 cut(s) | 259 |
| MroXI | GAANNNNTTC | 1 cut(s) | 39 |
| MseI | TTAA | 5 cut(s) | 171, 210, 243, 384, 426 |
| MslI | CAYNNNNRTG | 1 cut(s) | 615 |
| MspI | CCGG | 1 cut(s) | 260 |
| MunI | CAATTG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 185, 194, 518, 824 |
| NdeII | GATC | 2 cut(s) | 143, 798 |
| NlaIII | CATG | 4 cut(s) | 312, 350, 512, 868 |
| NlaIV | GGNNCC | 1 cut(s) | 817 |
| NmuCI | GTSAC | 1 cut(s) | 391 |
| NspI | RCATGY | 1 cut(s) | 868 |
| PdmI | GAANNNNTTC | 1 cut(s) | 39 |
| PfeI | GAWTC | 3 cut(s) | 406, 672, 806 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 63 |
| PkrI | GCNGC | 1 cut(s) | 785 |
| PshBI | ATTAAT | 1 cut(s) | 384 |
| PspN4I | GGNNCC | 1 cut(s) | 817 |
| RsaI | GTAC | 1 cut(s) | 442 |
| RsaNI | GTAC | 1 cut(s) | 441 |
| RseI | CAYNNNNRTG | 1 cut(s) | 615 |
| SaqAI | TTAA | 5 cut(s) | 171, 210, 243, 384, 426 |
| SatI | GCNGC | 1 cut(s) | 784 |
| Sau3AI | GATC | 2 cut(s) | 143, 798 |
| SfaNI | GCATC | 1 cut(s) | 388 |
| SfcI | CTRYAG | 1 cut(s) | 810 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 615 |
| Sse9I | AATT | 6 cut(s) | 14, 25, 106, 167, 220, 444 |
| SsiI | CCGC | 1 cut(s) | 164 |
| SspMI | CTAG | 3 cut(s) | 234, 411, 534 |
| TaaI | ACNGT | 5 cut(s) | 48, 158, 590, 606, 779 |
| TaqI | TCGA | 4 cut(s) | 43, 326, 481, 748 |
| TasI | AATT | 6 cut(s) | 14, 25, 106, 167, 220, 444 |
| TfiI | GAWTC | 3 cut(s) | 406, 672, 806 |
| Tru1I | TTAA | 5 cut(s) | 171, 210, 243, 384, 426 |
| Tru9I | TTAA | 5 cut(s) | 171, 210, 243, 384, 426 |
| TscAI | CASTG | 2 cut(s) | 104, 784 |
| TseFI | GTSAC | 1 cut(s) | 391 |
| TseI | GCWGC | 1 cut(s) | 783 |
| Tsp45I | GTSAC | 1 cut(s) | 391 |
| TspDTI | ATGAA | 4 cut(s) | 258, 335, 483, 516 |
| TspRI | CASTG | 2 cut(s) | 104, 784 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 63 |
| VspI | ATTAAT | 1 cut(s) | 384 |
| XapI | RAATTY | 3 cut(s) | 25, 167, 220 |
| XceI | RCATGY | 1 cut(s) | 868 |
| XmnI | GAANNNNTTC | 1 cut(s) | 39 |
| XspI | CTAG | 3 cut(s) | 234, 411, 534 |