Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 229 |
| Acc36I | ACCTGC | 2 cut(s) | 229, 1027 |
| AccB1I | GGYRCC | 1 cut(s) | 1275 |
| AccII | CGCG | 1 cut(s) | 15 |
| AccIII | TCCGGA | 2 cut(s) | 115, 934 |
| AcsI | RAATTY | 6 cut(s) | 89, 406, 842, 895, 943, 1411 |
| AcuI | CTGAAG | 1 cut(s) | 1278 |
| AfaI | GTAC | 3 cut(s) | 7, 421, 751 |
| AfeI | AGCGCT | 1 cut(s) | 660 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 151, 649 |
| AflII | CTTAAG | 1 cut(s) | 1016 |
| AflIII | ACRYGT | 1 cut(s) | 264 |
| AgsI | TTSAA | 6 cut(s) | 261, 323, 639, 719, 847, 1233 |
| AhlI | ACTAGT | 1 cut(s) | 1141 |
| AluBI | AGCT | 7 cut(s) | 581, 769, 872, 908, 1153, 1340, 1400 |
| AluI | AGCT | 7 cut(s) | 581, 769, 872, 908, 1153, 1340, 1400 |
| Alw21I | GWGCWC | 2 cut(s) | 364, 1247 |
| Alw26I | GTCTC | 1 cut(s) | 504 |
| Ama87I | CYCGRG | 1 cut(s) | 1005 |
| Aor13HI | TCCGGA | 2 cut(s) | 115, 934 |
| Aor51HI | AGCGCT | 1 cut(s) | 660 |
| AoxI | GGCC | 2 cut(s) | 651, 1110 |
| ApeKI | GCWGC | 6 cut(s) | 31, 55, 58, 155, 314, 1126 |
| ApoI | RAATTY | 6 cut(s) | 89, 406, 842, 895, 943, 1411 |
| AspLEI | GCGC | 3 cut(s) | 17, 661, 990 |
| AspS9I | GGNCC | 5 cut(s) | 306, 652, 712, 1111, 1253 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| AvaI | CYCGRG | 1 cut(s) | 1005 |
| AvaII | GGWCC | 3 cut(s) | 306, 712, 1253 |
| BanI | GGYRCC | 1 cut(s) | 1275 |
| BbsI | GAAGAC | 2 cut(s) | 173, 1266 |
| Bbv12I | GWGCWC | 2 cut(s) | 364, 1247 |
| BbvCI | CCTCAGC | 1 cut(s) | 1218 |
| BbvI | GCAGC | 6 cut(s) | 43, 67, 70, 167, 301, 1138 |
| BccI | CCATC | 1 cut(s) | 226 |
| BcoDI | GTCTC | 1 cut(s) | 504 |
| BcuI | ACTAGT | 1 cut(s) | 1141 |
| BfaI | CTAG | 4 cut(s) | 1053, 1142, 1248, 1280 |
| BfoI | RGCGCY | 1 cut(s) | 662 |
| BfrI | CTTAAG | 1 cut(s) | 1016 |
| BfuAI | ACCTGC | 2 cut(s) | 229, 1027 |
| BglII | AGATCT | 1 cut(s) | 1389 |
| BisI | GCNGC | 6 cut(s) | 32, 56, 59, 156, 315, 1127 |
| BlsI | GCNGC | 6 cut(s) | 33, 57, 60, 157, 316, 1128 |
| Bme18I | GGWCC | 3 cut(s) | 306, 712, 1253 |
| BmeT110I | CYCGRG | 1 cut(s) | 1005 |
| BmgT120I | GGNCC | 5 cut(s) | 306, 652, 712, 1111, 1253 |
| BmiI | GGNNCC | 2 cut(s) | 308, 1277 |
| BmsI | GCATC | 2 cut(s) | 398, 846 |
| BpiI | GAAGAC | 2 cut(s) | 173, 1266 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1218 |
| BpuEI | CTTGAG | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 1 cut(s) | 282 |
| BsaWI | WCCGGW | 2 cut(s) | 115, 934 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 151, 649 |
| Bse1I | ACTGG | 2 cut(s) | 139, 1467 |
| Bse3DI | GCAATG | 1 cut(s) | 348 |
| BseAI | TCCGGA | 2 cut(s) | 115, 934 |
| BseDI | CCNNGG | 1 cut(s) | 282 |
| BseGI | GGATG | 5 cut(s) | 226, 292, 793, 889, 943 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 151, 649 |
| BseMI | GCAATG | 1 cut(s) | 348 |
| BseMII | CTCAG | 4 cut(s) | 363, 923, 1209, 1232 |
| BseNI | ACTGG | 2 cut(s) | 139, 1467 |
| BseXI | GCAGC | 6 cut(s) | 43, 67, 70, 167, 301, 1138 |
| BsgI | GTGCAG | 1 cut(s) | 642 |
| Bsh1236I | CGCG | 1 cut(s) | 15 |
| BshFI | GGCC | 2 cut(s) | 653, 1112 |
| BshNI | GGYRCC | 1 cut(s) | 1275 |
| BsiHKAI | GWGCWC | 2 cut(s) | 364, 1247 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1005 |
| BsiSI | CCGG | 2 cut(s) | 116, 935 |
| BslFI | GGGAC | 1 cut(s) | 531 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 151, 649 |
| BsmAI | GTCTC | 1 cut(s) | 504 |
| BsmFI | GGGAC | 1 cut(s) | 531 |
| BsmI | GAATGC | 1 cut(s) | 1432 |
| BsnI | GGCC | 2 cut(s) | 653, 1112 |
| BsoBI | CYCGRG | 1 cut(s) | 1005 |
| Bsp1286I | GDGCHC | 2 cut(s) | 364, 1247 |
| Bsp13I | TCCGGA | 2 cut(s) | 115, 934 |
| Bsp1407I | TGTACA | 1 cut(s) | 5 |
| Bsp143I | GATC | 2 cut(s) | 454, 1389 |
| BspANI | GGCC | 2 cut(s) | 653, 1112 |
| BspCNI | CTCAG | 4 cut(s) | 364, 922, 1210, 1233 |
| BspEI | TCCGGA | 2 cut(s) | 115, 934 |
| BspFNI | CGCG | 1 cut(s) | 15 |
| BspHI | TCATGA | 3 cut(s) | 96, 502, 1210 |
| BspLI | GGNNCC | 2 cut(s) | 308, 1277 |
| BspMI | ACCTGC | 2 cut(s) | 229, 1027 |
| BspT107I | GGYRCC | 1 cut(s) | 1275 |
| BspTI | CTTAAG | 1 cut(s) | 1016 |
| BsrDI | GCAATG | 1 cut(s) | 348 |
| BsrGI | TGTACA | 1 cut(s) | 5 |
| BsrI | ACTGG | 2 cut(s) | 139, 1467 |
| BssECI | CCNNGG | 1 cut(s) | 282 |
| BssMI | GATC | 2 cut(s) | 454, 1389 |
| BssT1I | CCWWGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 2 cut(s) | 424, 1303 |
| Bst6I | CTCTTC | 3 cut(s) | 372, 1282, 1353 |
| BstAFI | CTTAAG | 1 cut(s) | 1016 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1189 |
| BstAUI | TGTACA | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 4 cut(s) | 387, 625, 1194, 1398 |
| BstDEI | CTNAG | 6 cut(s) | 184, 372, 614, 909, 1218, 1241 |
| BstEII | GGTNACC | 1 cut(s) | 122 |
| BstF5I | GGATG | 5 cut(s) | 226, 292, 793, 889, 943 |
| BstFNI | CGCG | 1 cut(s) | 15 |
| BstH2I | RGCGCY | 1 cut(s) | 662 |
| BstHHI | GCGC | 3 cut(s) | 17, 661, 990 |
| BstKTI | GATC | 2 cut(s) | 457, 1392 |
| BstMAI | GTCTC | 1 cut(s) | 504 |
| BstMBI | GATC | 2 cut(s) | 454, 1389 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 23, 1189 |
| BstNSI | RCATGY | 3 cut(s) | 268, 927, 968 |
| BstPI | GGTNACC | 1 cut(s) | 122 |
| BstUI | CGCG | 1 cut(s) | 15 |
| BstV1I | GCAGC | 6 cut(s) | 43, 67, 70, 167, 301, 1138 |
| BstV2I | GAAGAC | 2 cut(s) | 173, 1266 |
| BstX2I | RGATCY | 1 cut(s) | 1389 |
| BstYI | RGATCY | 1 cut(s) | 1389 |
| BsuRI | GGCC | 2 cut(s) | 653, 1112 |
| BtsCI | GGATG | 5 cut(s) | 226, 292, 793, 889, 943 |
| BtsI | GCAGTG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 2 cut(s) | 270, 1460 |
| BveI | ACCTGC | 2 cut(s) | 229, 1027 |
| Cac8I | GCNNGC | 4 cut(s) | 387, 625, 1194, 1398 |
| CciI | TCATGA | 3 cut(s) | 96, 502, 1210 |
| CfoI | GCGC | 3 cut(s) | 17, 661, 990 |
| Cfr13I | GGNCC | 5 cut(s) | 306, 652, 712, 1111, 1253 |
| Csp6I | GTAC | 3 cut(s) | 6, 420, 750 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 627, 662 |
| CviQI | GTAC | 3 cut(s) | 6, 420, 750 |
| DdeI | CTNAG | 6 cut(s) | 184, 372, 614, 909, 1218, 1241 |
| DpnI | GATC | 2 cut(s) | 456, 1391 |
| DpnII | GATC | 2 cut(s) | 454, 1389 |
| Eam1104I | CTCTTC | 3 cut(s) | 372, 1282, 1353 |
| EarI | CTCTTC | 3 cut(s) | 372, 1282, 1353 |
| Eco130I | CCWWGG | 1 cut(s) | 282 |
| Eco47I | GGWCC | 3 cut(s) | 306, 712, 1253 |
| Eco47III | AGCGCT | 1 cut(s) | 660 |
| Eco57I | CTGAAG | 1 cut(s) | 1278 |
| Eco88I | CYCGRG | 1 cut(s) | 1005 |
| Eco91I | GGTNACC | 1 cut(s) | 122 |
| EcoO109I | RGGNCCY | 4 cut(s) | 306, 712, 1111, 1253 |
| EcoO65I | GGTNACC | 1 cut(s) | 122 |
| EcoRI | GAATTC | 2 cut(s) | 842, 895 |
| EcoT14I | CCWWGG | 1 cut(s) | 282 |
| ErhI | CCWWGG | 1 cut(s) | 282 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 33, 1251, 1283 |
| FaqI | GGGAC | 1 cut(s) | 531 |
| Fnu4HI | GCNGC | 6 cut(s) | 32, 56, 59, 156, 315, 1127 |
| FokI | GGATG | 5 cut(s) | 233, 299, 800, 876, 950 |
| Fsp4HI | GCNGC | 6 cut(s) | 32, 56, 59, 156, 315, 1127 |
| FspBI | CTAG | 4 cut(s) | 1053, 1142, 1248, 1280 |
| GlaI | GCGC | 3 cut(s) | 16, 660, 989 |
| GluI | GCNGC | 6 cut(s) | 32, 56, 59, 156, 315, 1127 |
| HaeII | RGCGCY | 1 cut(s) | 662 |
| HaeIII | GGCC | 2 cut(s) | 653, 1112 |
| HapII | CCGG | 2 cut(s) | 116, 935 |
| HhaI | GCGC | 3 cut(s) | 17, 661, 990 |
| Hin6I | GCGC | 3 cut(s) | 15, 659, 988 |
| HinP1I | GCGC | 3 cut(s) | 15, 659, 988 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HindIII | AAGCTT | 2 cut(s) | 767, 870 |
| HinfI | GANTC | 6 cut(s) | 197, 346, 497, 1073, 1081, 1377 |
| HpaII | CCGG | 2 cut(s) | 116, 935 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy166II | GTNNAC | 5 cut(s) | 6, 270, 487, 962, 1299 |
| Hpy188I | TCNGA | 5 cut(s) | 77, 202, 373, 894, 1242 |
| Hpy8I | GTNNAC | 5 cut(s) | 6, 270, 487, 962, 1299 |
| HpyAV | CCTTC | 5 cut(s) | 145, 197, 984, 1104, 1365 |
| HpyCH4III | ACNGT | 2 cut(s) | 424, 1303 |
| HpyCH4V | TGCA | 8 cut(s) | 317, 341, 623, 731, 956, 968, 1126, 1313 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 23, 1189 |
| HpyF3I | CTNAG | 6 cut(s) | 184, 372, 614, 909, 1218, 1241 |
| HspAI | GCGC | 3 cut(s) | 15, 659, 988 |
| Kpn2I | TCCGGA | 2 cut(s) | 115, 934 |
| Kzo9I | GATC | 2 cut(s) | 454, 1389 |
| LmnI | GCTCC | 1 cut(s) | 235 |
| Lsp1109I | GCAGC | 6 cut(s) | 43, 67, 70, 167, 301, 1138 |
| LweI | GCATC | 2 cut(s) | 398, 846 |
| MaeI | CTAG | 4 cut(s) | 1053, 1142, 1248, 1280 |
| MaeIII | GTNAC | 4 cut(s) | 122, 244, 926, 1363 |
| MalI | GATC | 2 cut(s) | 456, 1391 |
| MboI | GATC | 2 cut(s) | 454, 1389 |
| MboII | GAAGA | 9 cut(s) | 178, 389, 775, 790, 1271, 1299, 1335, 1340, 1445 |
| MfeI | CAATTG | 1 cut(s) | 318 |
| MflI | RGATCY | 1 cut(s) | 1389 |
| MhlI | GDGCHC | 2 cut(s) | 364, 1247 |
| MlyI | GAGTC | 2 cut(s) | 506, 1386 |
| MroI | TCCGGA | 2 cut(s) | 115, 934 |
| MseI | TTAA | 4 cut(s) | 110, 590, 1017, 1206 |
| MspCI | CTTAAG | 1 cut(s) | 1016 |
| MspI | CCGG | 2 cut(s) | 116, 935 |
| MunI | CAATTG | 1 cut(s) | 318 |
| Mva1269I | GAATGC | 1 cut(s) | 1432 |
| MvnI | CGCG | 1 cut(s) | 15 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 23, 1189 |
| NdeII | GATC | 2 cut(s) | 454, 1389 |
| NlaIV | GGNNCC | 2 cut(s) | 308, 1277 |
| NmuCI | GTSAC | 1 cut(s) | 122 |
| NspI | RCATGY | 3 cut(s) | 268, 927, 968 |
| PaeR7I | CTCGAG | 1 cut(s) | 1005 |
| PagI | TCATGA | 3 cut(s) | 96, 502, 1210 |
| PaqCI | CACCTGC | 1 cut(s) | 229 |
| PciI | ACATGT | 1 cut(s) | 264 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1364 |
| PctI | GAATGC | 1 cut(s) | 1432 |
| PfeI | GAWTC | 4 cut(s) | 197, 346, 1073, 1081 |
| PkrI | GCNGC | 6 cut(s) | 33, 57, 60, 157, 316, 1128 |
| PleI | GAGTC | 2 cut(s) | 505, 1385 |
| PpsI | GAGTC | 2 cut(s) | 505, 1385 |
| PpuMI | RGGWCCY | 3 cut(s) | 306, 712, 1253 |
| PscI | ACATGT | 1 cut(s) | 264 |
| Psp5II | RGGWCCY | 3 cut(s) | 306, 712, 1253 |
| PspEI | GGTNACC | 1 cut(s) | 122 |
| PspN4I | GGNNCC | 2 cut(s) | 308, 1277 |
| PspPI | GGNCC | 5 cut(s) | 306, 652, 712, 1111, 1253 |
| PspPPI | RGGWCCY | 3 cut(s) | 306, 712, 1253 |
| PsuI | RGATCY | 1 cut(s) | 1389 |
| RsaI | GTAC | 3 cut(s) | 7, 421, 751 |
| RsaNI | GTAC | 3 cut(s) | 6, 420, 750 |
| SaqAI | TTAA | 4 cut(s) | 110, 590, 1017, 1206 |
| SatI | GCNGC | 6 cut(s) | 32, 56, 59, 156, 315, 1127 |
| Sau3AI | GATC | 2 cut(s) | 454, 1389 |
| Sau96I | GGNCC | 5 cut(s) | 306, 652, 712, 1111, 1253 |
| SchI | GAGTC | 2 cut(s) | 506, 1386 |
| SduI | GDGCHC | 2 cut(s) | 364, 1247 |
| SfaNI | GCATC | 2 cut(s) | 398, 846 |
| Sfr274I | CTCGAG | 1 cut(s) | 1005 |
| SinI | GGWCC | 3 cut(s) | 306, 712, 1253 |
| SlaI | CTCGAG | 1 cut(s) | 1005 |
| SmlI | CTYRAG | 3 cut(s) | 49, 1005, 1016 |
| SmoI | CTYRAG | 3 cut(s) | 49, 1005, 1016 |
| SpeI | ACTAGT | 1 cut(s) | 1141 |
| SspI | AATATT | 2 cut(s) | 368, 1450 |
| SspMI | CTAG | 4 cut(s) | 1053, 1142, 1248, 1280 |
| StyI | CCWWGG | 1 cut(s) | 282 |
| TaaI | ACNGT | 2 cut(s) | 424, 1303 |
| TaqI | TCGA | 2 cut(s) | 854, 1006 |
| TatI | WGTACW | 1 cut(s) | 5 |
| TfiI | GAWTC | 4 cut(s) | 197, 346, 1073, 1081 |
| Tru1I | TTAA | 4 cut(s) | 110, 590, 1017, 1206 |
| Tru9I | TTAA | 4 cut(s) | 110, 590, 1017, 1206 |
| TscAI | CASTG | 2 cut(s) | 277, 1467 |
| TseFI | GTSAC | 1 cut(s) | 122 |
| TseI | GCWGC | 6 cut(s) | 31, 55, 58, 155, 314, 1126 |
| Tsp45I | GTSAC | 1 cut(s) | 122 |
| TspDTI | ATGAA | 6 cut(s) | 113, 117, 240, 359, 761, 1260 |
| TspRI | CASTG | 2 cut(s) | 277, 1467 |
| Vha464I | CTTAAG | 1 cut(s) | 1016 |
| VpaK11BI | GGWCC | 3 cut(s) | 306, 712, 1253 |
| XapI | RAATTY | 6 cut(s) | 89, 406, 842, 895, 943, 1411 |
| XceI | RCATGY | 3 cut(s) | 268, 927, 968 |
| XhoI | CTCGAG | 1 cut(s) | 1005 |
| XspI | CTAG | 4 cut(s) | 1053, 1142, 1248, 1280 |