Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 368, 485 |
| AatII | GACGTC | 1 cut(s) | 519 |
| AccBSI | CCGCTC | 2 cut(s) | 108, 138 |
| AccII | CGCG | 3 cut(s) | 213, 222, 327 |
| AclWI | GGATC | 5 cut(s) | 439, 452, 807, 923, 1037 |
| AcoI | YGGCCR | 3 cut(s) | 3, 634, 792 |
| AcsI | RAATTY | 1 cut(s) | 1200 |
| AcuI | CTGAAG | 2 cut(s) | 631, 962 |
| AcyI | GRCGYC | 1 cut(s) | 516 |
| AfaI | GTAC | 2 cut(s) | 676, 1055 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 801 |
| AflIII | ACRYGT | 1 cut(s) | 564 |
| AgsI | TTSAA | 4 cut(s) | 73, 898, 1229, 1265 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 58, 565 |
| AjiI | CACGTC | 2 cut(s) | 487, 565 |
| AjnI | CCWGG | 4 cut(s) | 528, 587, 863, 1092 |
| AluBI | AGCT | 9 cut(s) | 121, 343, 454, 466, 523, 597, 701, 901, 1165 |
| AluI | AGCT | 9 cut(s) | 121, 343, 454, 466, 523, 597, 701, 901, 1165 |
| Alw21I | GWGCWC | 1 cut(s) | 468 |
| Alw26I | GTCTC | 1 cut(s) | 415 |
| AlwI | GGATC | 5 cut(s) | 439, 452, 807, 923, 1037 |
| AoxI | GGCC | 6 cut(s) | 3, 426, 634, 792, 844, 1034 |
| ApeKI | GCWGC | 3 cut(s) | 582, 776, 1078 |
| ApoI | RAATTY | 1 cut(s) | 1200 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 965, 997 |
| AspLEI | GCGC | 2 cut(s) | 24, 329 |
| AspS9I | GGNCC | 3 cut(s) | 532, 591, 844 |
| AsuC2I | CCSGG | 1 cut(s) | 442 |
| AsuHPI | GGTGA | 6 cut(s) | 115, 427, 460, 481, 740, 1189 |
| AsuII | TTCGAA | 1 cut(s) | 971 |
| AvaII | GGWCC | 2 cut(s) | 532, 591 |
| BamHI | GGATCC | 1 cut(s) | 444 |
| BanII | GRGCYC | 1 cut(s) | 468 |
| BauI | CACGAG | 1 cut(s) | 461 |
| Bbv12I | GWGCWC | 1 cut(s) | 468 |
| BbvI | GCAGC | 3 cut(s) | 569, 763, 1065 |
| BceAI | ACGGC | 3 cut(s) | 12, 310, 621 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 286, 320 |
| BciT130I | CCWGG | 4 cut(s) | 530, 589, 865, 1094 |
| BcnI | CCSGG | 1 cut(s) | 442 |
| BcoDI | GTCTC | 1 cut(s) | 415 |
| BfoI | RGCGCY | 1 cut(s) | 25 |
| Bme1390I | CCNGG | 5 cut(s) | 442, 530, 589, 865, 1094 |
| Bme18I | GGWCC | 2 cut(s) | 532, 591 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 58, 565 |
| BmgBI | CACGTC | 2 cut(s) | 487, 565 |
| BmgT120I | GGNCC | 3 cut(s) | 532, 591, 844 |
| BmiI | GGNNCC | 1 cut(s) | 446 |
| BmrFI | CCNGG | 5 cut(s) | 442, 530, 589, 865, 1094 |
| BmrI | ACTGGG | 1 cut(s) | 535 |
| BmsI | GCATC | 4 cut(s) | 375, 733, 763, 834 |
| BmuI | ACTGGG | 1 cut(s) | 535 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| Bpu14I | TTCGAA | 1 cut(s) | 971 |
| BpuEI | CTTGAG | 1 cut(s) | 895 |
| BpuMI | CCSGG | 1 cut(s) | 442 |
| Bsa29I | ATCGAT | 1 cut(s) | 669 |
| BsaBI | GATNNNNATC | 1 cut(s) | 927 |
| BsaHI | GRCGYC | 1 cut(s) | 516 |
| BsaJI | CCNNGG | 2 cut(s) | 795, 1239 |
| BsaWI | WCCGGW | 1 cut(s) | 1063 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 371, 401 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 801 |
| Bse1I | ACTGG | 3 cut(s) | 244, 535, 541 |
| Bse8I | GATNNNNATC | 1 cut(s) | 927 |
| BseBI | CCWGG | 4 cut(s) | 530, 589, 865, 1094 |
| BseCI | ATCGAT | 1 cut(s) | 669 |
| BseDI | CCNNGG | 2 cut(s) | 795, 1239 |
| BseGI | GGATG | 8 cut(s) | 99, 111, 285, 456, 480, 552, 693, 859 |
| BseJI | GATNNNNATC | 1 cut(s) | 927 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 801 |
| BseNI | ACTGG | 3 cut(s) | 244, 535, 541 |
| BseX3I | CGGCCG | 1 cut(s) | 634 |
| BseXI | GCAGC | 3 cut(s) | 569, 763, 1065 |
| BsgI | GTGCAG | 1 cut(s) | 568 |
| Bsh1236I | CGCG | 3 cut(s) | 213, 222, 327 |
| Bsh1285I | CGRYCG | 2 cut(s) | 364, 637 |
| BshFI | GGCC | 6 cut(s) | 5, 428, 636, 794, 846, 1036 |
| BshVI | ATCGAT | 1 cut(s) | 669 |
| BsiEI | CGRYCG | 2 cut(s) | 364, 637 |
| BsiHKAI | GWGCWC | 1 cut(s) | 468 |
| BsiSI | CCGG | 4 cut(s) | 442, 851, 1010, 1064 |
| BslFI | GGGAC | 3 cut(s) | 46, 335, 523 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 801 |
| BsmAI | GTCTC | 1 cut(s) | 415 |
| BsmBI | CGTCTC | 1 cut(s) | 415 |
| BsmFI | GGGAC | 3 cut(s) | 46, 335, 523 |
| BsnI | GGCC | 6 cut(s) | 5, 428, 636, 794, 846, 1036 |
| Bsp119I | TTCGAA | 1 cut(s) | 971 |
| Bsp1286I | GDGCHC | 1 cut(s) | 468 |
| Bsp143I | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| BspANI | GGCC | 6 cut(s) | 5, 428, 636, 794, 846, 1036 |
| BspDI | ATCGAT | 1 cut(s) | 669 |
| BspFNI | CGCG | 3 cut(s) | 213, 222, 327 |
| BspLI | GGNNCC | 1 cut(s) | 446 |
| BspPI | GGATC | 5 cut(s) | 439, 452, 807, 923, 1037 |
| BspQI | GCTCTTC | 1 cut(s) | 530 |
| BspT104I | TTCGAA | 1 cut(s) | 971 |
| BsrBI | CCGCTC | 2 cut(s) | 108, 138 |
| BsrI | ACTGG | 3 cut(s) | 244, 535, 541 |
| BssECI | CCNNGG | 2 cut(s) | 795, 1239 |
| BssMI | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| BssNI | GRCGYC | 1 cut(s) | 516 |
| BssSI | CACGAG | 1 cut(s) | 461 |
| Bst2BI | CACGAG | 1 cut(s) | 461 |
| Bst2UI | CCWGG | 4 cut(s) | 530, 589, 865, 1094 |
| Bst4CI | ACNGT | 2 cut(s) | 418, 433 |
| Bst6I | CTCTTC | 3 cut(s) | 509, 530, 1175 |
| BstACI | GRCGYC | 1 cut(s) | 516 |
| BstBI | TTCGAA | 1 cut(s) | 971 |
| BstC8I | GCNNGC | 2 cut(s) | 848, 912 |
| BstDEI | CTNAG | 1 cut(s) | 678 |
| BstF5I | GGATG | 8 cut(s) | 99, 111, 285, 456, 480, 552, 693, 859 |
| BstFNI | CGCG | 3 cut(s) | 213, 222, 327 |
| BstH2I | RGCGCY | 1 cut(s) | 25 |
| BstHHI | GCGC | 2 cut(s) | 24, 329 |
| BstKTI | GATC | 8 cut(s) | 255, 447, 579, 645, 669, 802, 931, 1032 |
| BstMAI | GTCTC | 1 cut(s) | 415 |
| BstMBI | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| BstMCI | CGRYCG | 2 cut(s) | 364, 637 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 219, 657, 907, 1075 |
| BstNI | CCWGG | 4 cut(s) | 530, 589, 865, 1094 |
| BstSCI | CCNGG | 5 cut(s) | 440, 528, 587, 863, 1092 |
| BstUI | CGCG | 3 cut(s) | 213, 222, 327 |
| BstV1I | GCAGC | 3 cut(s) | 569, 763, 1065 |
| BstX2I | RGATCY | 1 cut(s) | 444 |
| BstYI | RGATCY | 1 cut(s) | 444 |
| BstZI | CGGCCG | 1 cut(s) | 634 |
| Bsu15I | ATCGAT | 1 cut(s) | 669 |
| BsuRI | GGCC | 6 cut(s) | 5, 428, 636, 794, 846, 1036 |
| BsuTUI | ATCGAT | 1 cut(s) | 669 |
| BtgZI | GCGATG | 1 cut(s) | 675 |
| BtrI | CACGTC | 2 cut(s) | 487, 565 |
| BtsCI | GGATG | 8 cut(s) | 99, 111, 285, 456, 480, 552, 693, 859 |
| BtsI | GCAGTG | 1 cut(s) | 1076 |
| BtsIMutI | CAGTG | 1 cut(s) | 1076 |
| Cac8I | GCNNGC | 2 cut(s) | 848, 912 |
| CfoI | GCGC | 2 cut(s) | 24, 329 |
| Cfr13I | GGNCC | 3 cut(s) | 532, 591, 844 |
| ClaI | ATCGAT | 1 cut(s) | 669 |
| CsiI | ACCWGGT | 1 cut(s) | 587 |
| Csp6I | GTAC | 2 cut(s) | 675, 1054 |
| CviAII | CATG | 1 cut(s) | 265 |
| CviQI | GTAC | 2 cut(s) | 675, 1054 |
| DdeI | CTNAG | 1 cut(s) | 678 |
| DpnI | GATC | 8 cut(s) | 254, 446, 578, 644, 668, 801, 930, 1031 |
| DpnII | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 368, 485 |
| DriI | GACNNNNNGTC | 2 cut(s) | 58, 565 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 368, 485 |
| EaeI | YGGCCR | 3 cut(s) | 3, 634, 792 |
| EagI | CGGCCG | 1 cut(s) | 634 |
| Eam1104I | CTCTTC | 3 cut(s) | 509, 530, 1175 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 58, 565 |
| EarI | CTCTTC | 3 cut(s) | 509, 530, 1175 |
| EciI | GGCGGA | 3 cut(s) | 139, 383, 629 |
| Ecl136II | GAGCTC | 1 cut(s) | 466 |
| EclXI | CGGCCG | 1 cut(s) | 634 |
| Eco24I | GRGCYC | 1 cut(s) | 468 |
| Eco47I | GGWCC | 2 cut(s) | 532, 591 |
| Eco52I | CGGCCG | 1 cut(s) | 634 |
| Eco53kI | GAGCTC | 1 cut(s) | 466 |
| Eco57I | CTGAAG | 2 cut(s) | 631, 962 |
| EcoICRI | GAGCTC | 1 cut(s) | 466 |
| EcoRII | CCWGG | 4 cut(s) | 528, 587, 863, 1092 |
| EcoT22I | ATGCAT | 1 cut(s) | 748 |
| EcoT38I | GRGCYC | 1 cut(s) | 468 |
| Esp3I | CGTCTC | 1 cut(s) | 415 |
| FaeI | CATG | 1 cut(s) | 268 |
| FaqI | GGGAC | 3 cut(s) | 46, 335, 523 |
| FatI | CATG | 1 cut(s) | 264 |
| FauI | CCCGC | 1 cut(s) | 714 |
| FauNDI | CATATG | 1 cut(s) | 985 |
| FokI | GGATG | 8 cut(s) | 86, 98, 272, 443, 467, 539, 700, 866 |
| FriOI | GRGCYC | 1 cut(s) | 468 |
| GlaI | GCGC | 2 cut(s) | 23, 328 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| HaeII | RGCGCY | 1 cut(s) | 25 |
| HaeIII | GGCC | 6 cut(s) | 5, 428, 636, 794, 846, 1036 |
| HapII | CCGG | 4 cut(s) | 442, 851, 1010, 1064 |
| HhaI | GCGC | 2 cut(s) | 24, 329 |
| Hin1I | GRCGYC | 1 cut(s) | 516 |
| Hin1II | CATG | 1 cut(s) | 268 |
| Hin6I | GCGC | 2 cut(s) | 22, 327 |
| HinP1I | GCGC | 2 cut(s) | 22, 327 |
| HindIII | AAGCTT | 1 cut(s) | 899 |
| HinfI | GANTC | 5 cut(s) | 59, 92, 257, 1144, 1168 |
| HpaII | CCGG | 4 cut(s) | 442, 851, 1010, 1064 |
| HphI | GGTGA | 6 cut(s) | 115, 427, 460, 481, 740, 1189 |
| Hpy188I | TCNGA | 7 cut(s) | 46, 250, 547, 642, 1149, 1173, 1240 |
| Hpy188III | TCNNGA | 2 cut(s) | 73, 874 |
| HpyAV | CCTTC | 5 cut(s) | 79, 319, 835, 1105, 1186 |
| HpyCH4III | ACNGT | 2 cut(s) | 418, 433 |
| HpyCH4IV | ACGT | 7 cut(s) | 315, 348, 408, 486, 516, 564, 603 |
| HpyCH4V | TGCA | 5 cut(s) | 585, 736, 746, 825, 860 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 219, 657, 907, 1075 |
| HpyF3I | CTNAG | 1 cut(s) | 678 |
| HpySE526I | ACGT | 7 cut(s) | 315, 348, 408, 486, 516, 564, 603 |
| Hsp92I | GRCGYC | 1 cut(s) | 516 |
| Hsp92II | CATG | 1 cut(s) | 268 |
| HspAI | GCGC | 2 cut(s) | 22, 327 |
| Kzo9I | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| LguI | GCTCTTC | 1 cut(s) | 530 |
| LmnI | GCTCC | 4 cut(s) | 113, 143, 1066, 1162 |
| Lsp1109I | GCAGC | 3 cut(s) | 569, 763, 1065 |
| LweI | GCATC | 4 cut(s) | 375, 733, 763, 834 |
| MabI | ACCWGGT | 1 cut(s) | 587 |
| MaeII | ACGT | 7 cut(s) | 315, 348, 408, 486, 516, 564, 603 |
| MaeIII | GTNAC | 4 cut(s) | 433, 487, 497, 832 |
| MalI | GATC | 8 cut(s) | 254, 446, 578, 644, 668, 801, 930, 1031 |
| MbiI | CCGCTC | 2 cut(s) | 108, 138 |
| MboI | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| MflI | RGATCY | 1 cut(s) | 444 |
| MhlI | GDGCHC | 1 cut(s) | 468 |
| MluCI | AATT | 3 cut(s) | 893, 1200, 1216 |
| MlyI | GAGTC | 3 cut(s) | 68, 86, 1162 |
| MmeI | TCCRAC | 1 cut(s) | 69 |
| Mph1103I | ATGCAT | 1 cut(s) | 748 |
| MseI | TTAA | 4 cut(s) | 599, 1017, 1101, 1137 |
| MslI | CAYNNNNRTG | 1 cut(s) | 830 |
| MspI | CCGG | 4 cut(s) | 442, 851, 1010, 1064 |
| MspR9I | CCNGG | 5 cut(s) | 442, 530, 589, 865, 1094 |
| MvaI | CCWGG | 4 cut(s) | 530, 589, 865, 1094 |
| MvnI | CGCG | 3 cut(s) | 213, 222, 327 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 219, 657, 907, 1075 |
| NciI | CCSGG | 1 cut(s) | 442 |
| NdeI | CATATG | 1 cut(s) | 985 |
| NdeII | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| NlaIII | CATG | 1 cut(s) | 268 |
| NlaIV | GGNNCC | 1 cut(s) | 446 |
| NmeAIII | GCCGAG | 2 cut(s) | 820, 1062 |
| NmuCI | GTSAC | 4 cut(s) | 433, 487, 497, 832 |
| NsiI | ATGCAT | 1 cut(s) | 748 |
| NspV | TTCGAA | 1 cut(s) | 971 |
| PciSI | GCTCTTC | 1 cut(s) | 530 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 54, 312, 366, 414 |
| PfeI | GAWTC | 2 cut(s) | 257, 1144 |
| PfoI | TCCNGGA | 1 cut(s) | 528 |
| PleI | GAGTC | 3 cut(s) | 67, 86, 1162 |
| PpsI | GAGTC | 3 cut(s) | 67, 86, 1162 |
| Psp124BI | GAGCTC | 1 cut(s) | 468 |
| Psp6I | CCWGG | 4 cut(s) | 528, 587, 863, 1092 |
| PspGI | CCWGG | 4 cut(s) | 528, 587, 863, 1092 |
| PspN4I | GGNNCC | 1 cut(s) | 446 |
| PspPI | GGNCC | 3 cut(s) | 532, 591, 844 |
| PsuI | RGATCY | 1 cut(s) | 444 |
| RsaI | GTAC | 2 cut(s) | 676, 1055 |
| RsaNI | GTAC | 2 cut(s) | 675, 1054 |
| RseI | CAYNNNNRTG | 1 cut(s) | 830 |
| SacI | GAGCTC | 1 cut(s) | 468 |
| SapI | GCTCTTC | 1 cut(s) | 530 |
| SaqAI | TTAA | 4 cut(s) | 599, 1017, 1101, 1137 |
| Sau3AI | GATC | 8 cut(s) | 252, 444, 576, 642, 666, 799, 928, 1029 |
| Sau96I | GGNCC | 3 cut(s) | 532, 591, 844 |
| SchI | GAGTC | 3 cut(s) | 68, 86, 1162 |
| ScrFI | CCNGG | 5 cut(s) | 442, 530, 589, 865, 1094 |
| SduI | GDGCHC | 1 cut(s) | 468 |
| SexAI | ACCWGGT | 1 cut(s) | 587 |
| SfaNI | GCATC | 4 cut(s) | 375, 733, 763, 834 |
| SfuI | TTCGAA | 1 cut(s) | 971 |
| SinI | GGWCC | 2 cut(s) | 532, 591 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 830 |
| SmlI | CTYRAG | 1 cut(s) | 874 |
| SmoI | CTYRAG | 1 cut(s) | 874 |
| Sse9I | AATT | 3 cut(s) | 893, 1200, 1216 |
| SstI | GAGCTC | 1 cut(s) | 468 |
| StyD4I | CCNGG | 5 cut(s) | 440, 528, 587, 863, 1092 |
| TaaI | ACNGT | 2 cut(s) | 418, 433 |
| TaiI | ACGT | 7 cut(s) | 318, 351, 411, 489, 519, 567, 606 |
| TaqI | TCGA | 7 cut(s) | 255, 291, 312, 360, 558, 669, 971 |
| TasI | AATT | 3 cut(s) | 893, 1200, 1216 |
| TatI | WGTACW | 2 cut(s) | 674, 1053 |
| TauI | GCSGC | 7 cut(s) | 27, 155, 213, 332, 335, 614, 696 |
| TfiI | GAWTC | 2 cut(s) | 257, 1144 |
| Tru1I | TTAA | 4 cut(s) | 599, 1017, 1101, 1137 |
| Tru9I | TTAA | 4 cut(s) | 599, 1017, 1101, 1137 |
| TscAI | CASTG | 1 cut(s) | 1076 |
| TseFI | GTSAC | 4 cut(s) | 433, 487, 497, 832 |
| TseI | GCWGC | 3 cut(s) | 582, 776, 1078 |
| Tsp45I | GTSAC | 4 cut(s) | 433, 487, 497, 832 |
| TspDTI | ATGAA | 2 cut(s) | 742, 899 |
| TspGWI | ACGGA | 1 cut(s) | 229 |
| TspRI | CASTG | 1 cut(s) | 1076 |
| VpaK11BI | GGWCC | 2 cut(s) | 532, 591 |
| XapI | RAATTY | 1 cut(s) | 1200 |
| ZraI | GACGTC | 1 cut(s) | 517 |
| Zsp2I | ATGCAT | 1 cut(s) | 748 |