Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 33 - 113 | 2.6e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 689 |
| AccI | GTMKAC | 1 cut(s) | 703 |
| AccII | CGCG | 1 cut(s) | 533 |
| AccIII | TCCGGA | 1 cut(s) | 622 |
| AciI | CCGC | 1 cut(s) | 689 |
| AclWI | GGATC | 2 cut(s) | 573, 586 |
| AcsI | RAATTY | 1 cut(s) | 341 |
| AcuI | CTGAAG | 2 cut(s) | 252, 308 |
| AfaI | GTAC | 2 cut(s) | 201, 599 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 32, 450, 451, 477, 503, 613, 674 |
| AflIII | ACRYGT | 1 cut(s) | 392 |
| AgsI | TTSAA | 2 cut(s) | 78, 213 |
| AhlI | ACTAGT | 1 cut(s) | 80 |
| AjiI | CACGTC | 1 cut(s) | 395 |
| AlwI | GGATC | 2 cut(s) | 573, 586 |
| Aor13HI | TCCGGA | 1 cut(s) | 622 |
| AoxI | GGCC | 1 cut(s) | 604 |
| ApeKI | GCWGC | 1 cut(s) | 509 |
| ApoI | RAATTY | 1 cut(s) | 341 |
| AseI | ATTAAT | 1 cut(s) | 96 |
| AspLEI | GCGC | 2 cut(s) | 509, 535 |
| AspS9I | GGNCC | 1 cut(s) | 494 |
| AsuHPI | GGTGA | 2 cut(s) | 67, 515 |
| AvaII | GGWCC | 1 cut(s) | 494 |
| BamHI | GGATCC | 1 cut(s) | 578 |
| BbsI | GAAGAC | 3 cut(s) | 242, 540, 656 |
| BbvI | GCAGC | 1 cut(s) | 496 |
| BccI | CCATC | 2 cut(s) | 98, 473 |
| BcuI | ACTAGT | 1 cut(s) | 80 |
| BfaI | CTAG | 3 cut(s) | 81, 189, 378 |
| BfoI | RGCGCY | 1 cut(s) | 510 |
| BisI | GCNGC | 1 cut(s) | 510 |
| BlsI | GCNGC | 1 cut(s) | 511 |
| Bme18I | GGWCC | 1 cut(s) | 494 |
| BmgBI | CACGTC | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 1 cut(s) | 494 |
| BmiI | GGNNCC | 1 cut(s) | 580 |
| BpiI | GAAGAC | 3 cut(s) | 242, 540, 656 |
| BsaJI | CCNNGG | 2 cut(s) | 268, 423 |
| BsaWI | WCCGGW | 1 cut(s) | 622 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 32, 450, 451, 477, 503, 613, 674 |
| Bse118I | RCCGGY | 1 cut(s) | 500 |
| Bse1I | ACTGG | 1 cut(s) | 668 |
| Bse3DI | GCAATG | 1 cut(s) | 189 |
| BseAI | TCCGGA | 1 cut(s) | 622 |
| BseDI | CCNNGG | 2 cut(s) | 268, 423 |
| BseGI | GGATG | 3 cut(s) | 22, 282, 697 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 32, 450, 451, 477, 503, 613, 674 |
| BseMI | GCAATG | 1 cut(s) | 189 |
| BseNI | ACTGG | 1 cut(s) | 668 |
| BseRI | GAGGAG | 3 cut(s) | 20, 184, 347 |
| BseXI | GCAGC | 1 cut(s) | 496 |
| Bsh1236I | CGCG | 1 cut(s) | 533 |
| Bsh1285I | CGRYCG | 1 cut(s) | 545 |
| BshFI | GGCC | 1 cut(s) | 606 |
| BsiEI | CGRYCG | 1 cut(s) | 545 |
| BsiSI | CCGG | 2 cut(s) | 501, 623 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 32, 450, 451, 477, 503, 613, 674 |
| BsnI | GGCC | 1 cut(s) | 606 |
| Bsp13I | TCCGGA | 1 cut(s) | 622 |
| Bsp143I | GATC | 1 cut(s) | 578 |
| Bsp19I | CCATGG | 2 cut(s) | 268, 423 |
| BspACI | CCGC | 1 cut(s) | 689 |
| BspANI | GGCC | 1 cut(s) | 606 |
| BspEI | TCCGGA | 1 cut(s) | 622 |
| BspFNI | CGCG | 1 cut(s) | 533 |
| BspLI | GGNNCC | 1 cut(s) | 580 |
| BspPI | GGATC | 2 cut(s) | 573, 586 |
| BspQI | GCTCTTC | 1 cut(s) | 679 |
| BsrBI | CCGCTC | 1 cut(s) | 689 |
| BsrDI | GCAATG | 1 cut(s) | 189 |
| BsrFI | RCCGGY | 1 cut(s) | 500 |
| BsrI | ACTGG | 1 cut(s) | 668 |
| BssAI | RCCGGY | 1 cut(s) | 500 |
| BssECI | CCNNGG | 2 cut(s) | 268, 423 |
| BssMI | GATC | 1 cut(s) | 578 |
| BssT1I | CCWWGG | 2 cut(s) | 268, 423 |
| Bst4CI | ACNGT | 2 cut(s) | 539, 677 |
| Bst6I | CTCTTC | 2 cut(s) | 564, 679 |
| BstDSI | CCRYGG | 2 cut(s) | 268, 423 |
| BstF5I | GGATG | 3 cut(s) | 22, 282, 697 |
| BstFNI | CGCG | 1 cut(s) | 533 |
| BstH2I | RGCGCY | 1 cut(s) | 510 |
| BstHHI | GCGC | 2 cut(s) | 509, 535 |
| BstKTI | GATC | 1 cut(s) | 581 |
| BstMBI | GATC | 1 cut(s) | 578 |
| BstMCI | CGRYCG | 1 cut(s) | 545 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 461, 506 |
| BstNSI | RCATGY | 1 cut(s) | 206 |
| BstUI | CGCG | 1 cut(s) | 533 |
| BstV1I | GCAGC | 1 cut(s) | 496 |
| BstV2I | GAAGAC | 3 cut(s) | 242, 540, 656 |
| BstX2I | RGATCY | 1 cut(s) | 578 |
| BstYI | RGATCY | 1 cut(s) | 578 |
| BsuRI | GGCC | 1 cut(s) | 606 |
| BtgI | CCRYGG | 2 cut(s) | 268, 423 |
| BtrI | CACGTC | 1 cut(s) | 395 |
| BtsCI | GGATG | 3 cut(s) | 22, 282, 697 |
| CfoI | GCGC | 2 cut(s) | 509, 535 |
| Cfr10I | RCCGGY | 1 cut(s) | 500 |
| Cfr13I | GGNCC | 1 cut(s) | 494 |
| Csp6I | GTAC | 2 cut(s) | 200, 598 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 409, 444 |
| CviAII | CATG | 6 cut(s) | 163, 203, 269, 424, 554, 562 |
| CviJI | RGCY | 8 cut(s) | 67, 88, 188, 230, 377, 443, 455, 606 |
| CviKI_1 | RGCY | 8 cut(s) | 67, 88, 188, 230, 377, 443, 455, 606 |
| CviQI | GTAC | 2 cut(s) | 200, 598 |
| DpnI | GATC | 1 cut(s) | 580 |
| DpnII | GATC | 1 cut(s) | 578 |
| Eam1104I | CTCTTC | 2 cut(s) | 564, 679 |
| EarI | CTCTTC | 2 cut(s) | 564, 679 |
| Eco130I | CCWWGG | 2 cut(s) | 268, 423 |
| Eco47I | GGWCC | 1 cut(s) | 494 |
| Eco57I | CTGAAG | 2 cut(s) | 252, 308 |
| EcoT14I | CCWWGG | 2 cut(s) | 268, 423 |
| ErhI | CCWWGG | 2 cut(s) | 268, 423 |
| FaeI | CATG | 6 cut(s) | 166, 206, 272, 427, 557, 565 |
| FatI | CATG | 6 cut(s) | 162, 202, 268, 423, 553, 561 |
| FblI | GTMKAC | 1 cut(s) | 703 |
| Fnu4HI | GCNGC | 1 cut(s) | 510 |
| FokI | GGATG | 3 cut(s) | 9, 289, 704 |
| Fsp4HI | GCNGC | 1 cut(s) | 510 |
| FspBI | CTAG | 3 cut(s) | 81, 189, 378 |
| GlaI | GCGC | 2 cut(s) | 508, 534 |
| GluI | GCNGC | 1 cut(s) | 510 |
| HaeII | RGCGCY | 1 cut(s) | 510 |
| HaeIII | GGCC | 1 cut(s) | 606 |
| HapII | CCGG | 2 cut(s) | 501, 623 |
| HhaI | GCGC | 2 cut(s) | 509, 535 |
| Hin1II | CATG | 6 cut(s) | 166, 206, 272, 427, 557, 565 |
| Hin6I | GCGC | 2 cut(s) | 507, 533 |
| HinP1I | GCGC | 2 cut(s) | 507, 533 |
| HincII | GTYRAC | 2 cut(s) | 430, 704 |
| HindII | GTYRAC | 2 cut(s) | 430, 704 |
| HinfI | GANTC | 3 cut(s) | 355, 437, 626 |
| HpaII | CCGG | 2 cut(s) | 501, 623 |
| HphI | GGTGA | 2 cut(s) | 67, 515 |
| Hpy166II | GTNNAC | 3 cut(s) | 430, 673, 704 |
| Hpy188I | TCNGA | 1 cut(s) | 327 |
| Hpy188III | TCNNGA | 1 cut(s) | 623 |
| Hpy8I | GTNNAC | 3 cut(s) | 430, 673, 704 |
| Hpy99I | CGWCG | 1 cut(s) | 708 |
| HpyAV | CCTTC | 1 cut(s) | 469 |
| HpyCH4III | ACNGT | 2 cut(s) | 539, 677 |
| HpyCH4IV | ACGT | 2 cut(s) | 394, 485 |
| HpyCH4V | TGCA | 1 cut(s) | 206 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 461, 506 |
| HpySE526I | ACGT | 2 cut(s) | 394, 485 |
| Hsp92II | CATG | 6 cut(s) | 166, 206, 272, 427, 557, 565 |
| HspAI | GCGC | 2 cut(s) | 507, 533 |
| Kpn2I | TCCGGA | 1 cut(s) | 622 |
| Kzo9I | GATC | 1 cut(s) | 578 |
| LguI | GCTCTTC | 1 cut(s) | 679 |
| LpnPI | CCDG | 5 cut(s) | 359, 510, 514, 636, 681 |
| Lsp1109I | GCAGC | 1 cut(s) | 496 |
| MaeI | CTAG | 3 cut(s) | 81, 189, 378 |
| MaeII | ACGT | 2 cut(s) | 394, 485 |
| MaeIII | GTNAC | 2 cut(s) | 55, 296 |
| MalI | GATC | 1 cut(s) | 580 |
| MbiI | CCGCTC | 1 cut(s) | 689 |
| MboI | GATC | 1 cut(s) | 578 |
| MboII | GAAGA | 9 cut(s) | 55, 242, 245, 349, 446, 540, 581, 656, 696 |
| MflI | RGATCY | 1 cut(s) | 578 |
| MluCI | AATT | 4 cut(s) | 93, 97, 281, 341 |
| MmeI | TCCRAC | 1 cut(s) | 254 |
| MroI | TCCGGA | 1 cut(s) | 622 |
| MseI | TTAA | 2 cut(s) | 96, 114 |
| MspI | CCGG | 2 cut(s) | 501, 623 |
| MvnI | CGCG | 1 cut(s) | 533 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 461, 506 |
| NcoI | CCATGG | 2 cut(s) | 268, 423 |
| NdeII | GATC | 1 cut(s) | 578 |
| NlaIII | CATG | 6 cut(s) | 166, 206, 272, 427, 557, 565 |
| NlaIV | GGNNCC | 1 cut(s) | 580 |
| NmuCI | GTSAC | 2 cut(s) | 55, 296 |
| NspI | RCATGY | 1 cut(s) | 206 |
| PciSI | GCTCTTC | 1 cut(s) | 679 |
| PfeI | GAWTC | 3 cut(s) | 355, 437, 626 |
| PflFI | GACNNNGTC | 1 cut(s) | 302 |
| PkrI | GCNGC | 1 cut(s) | 511 |
| PshBI | ATTAAT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 1 cut(s) | 580 |
| PspPI | GGNCC | 1 cut(s) | 494 |
| PsuI | RGATCY | 1 cut(s) | 578 |
| PsyI | GACNNNGTC | 1 cut(s) | 302 |
| RsaI | GTAC | 2 cut(s) | 201, 599 |
| RsaNI | GTAC | 2 cut(s) | 200, 598 |
| SalI | GTCGAC | 1 cut(s) | 702 |
| SapI | GCTCTTC | 1 cut(s) | 679 |
| SaqAI | TTAA | 2 cut(s) | 96, 114 |
| SatI | GCNGC | 1 cut(s) | 510 |
| Sau3AI | GATC | 1 cut(s) | 578 |
| Sau96I | GGNCC | 1 cut(s) | 494 |
| SetI | ASST | 8 cut(s) | 57, 75, 120, 131, 196, 397, 488, 660 |
| SinI | GGWCC | 1 cut(s) | 494 |
| SpeI | ACTAGT | 1 cut(s) | 80 |
| Sse9I | AATT | 4 cut(s) | 93, 97, 281, 341 |
| SsiI | CCGC | 1 cut(s) | 689 |
| SspMI | CTAG | 3 cut(s) | 81, 189, 378 |
| StyI | CCWWGG | 2 cut(s) | 268, 423 |
| TaaI | ACNGT | 2 cut(s) | 539, 677 |
| TaiI | ACGT | 2 cut(s) | 397, 488 |
| TaqI | TCGA | 1 cut(s) | 703 |
| TaqII | GACCGA | 1 cut(s) | 531 |
| TasI | AATT | 4 cut(s) | 93, 97, 281, 341 |
| TfiI | GAWTC | 3 cut(s) | 355, 437, 626 |
| Tru1I | TTAA | 2 cut(s) | 96, 114 |
| Tru9I | TTAA | 2 cut(s) | 96, 114 |
| TseFI | GTSAC | 2 cut(s) | 55, 296 |
| TseI | GCWGC | 1 cut(s) | 509 |
| Tsp45I | GTSAC | 2 cut(s) | 55, 296 |
| TspDTI | ATGAA | 3 cut(s) | 11, 293, 708 |
| Tth111I | GACNNNGTC | 1 cut(s) | 302 |
| VpaK11BI | GGWCC | 1 cut(s) | 494 |
| VspI | ATTAAT | 1 cut(s) | 96 |
| XapI | RAATTY | 1 cut(s) | 341 |
| XceI | RCATGY | 1 cut(s) | 206 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 590 |
| XmiI | GTMKAC | 1 cut(s) | 703 |
| XspI | CTAG | 3 cut(s) | 81, 189, 378 |