Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 242, 609 |
| AccI | GTMKAC | 1 cut(s) | 579 |
| AciI | CCGC | 3 cut(s) | 25, 391, 671 |
| AclWI | GGATC | 1 cut(s) | 267 |
| AcsI | RAATTY | 1 cut(s) | 763 |
| AcuI | CTGAAG | 2 cut(s) | 198, 210 |
| AfaI | GTAC | 2 cut(s) | 413, 1068 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 242, 281, 401, 589, 609, 1159 |
| AgsI | TTSAA | 9 cut(s) | 362, 441, 473, 563, 575, 702, 786, 1060, 1091 |
| AjnI | CCWGG | 3 cut(s) | 109, 1195, 1276 |
| AluBI | AGCT | 7 cut(s) | 218, 348, 718, 733, 877, 1115, 1124 |
| AluI | AGCT | 7 cut(s) | 218, 348, 718, 733, 877, 1115, 1124 |
| Alw26I | GTCTC | 2 cut(s) | 83, 1168 |
| AlwI | GGATC | 1 cut(s) | 267 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 176 |
| AoxI | GGCC | 2 cut(s) | 392, 1181 |
| ApeKI | GCWGC | 2 cut(s) | 348, 1112 |
| ApoI | RAATTY | 1 cut(s) | 763 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1243, 1275 |
| AspS9I | GGNCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 518, 1058, 1150 |
| AsuII | TTCGAA | 1 cut(s) | 1224 |
| AvaII | GGWCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| BauI | CACGAG | 1 cut(s) | 429 |
| BbsI | GAAGAC | 2 cut(s) | 216, 690 |
| BbvI | GCAGC | 2 cut(s) | 335, 1124 |
| BccI | CCATC | 3 cut(s) | 603, 1045, 1181 |
| BciT130I | CCWGG | 3 cut(s) | 111, 1197, 1278 |
| BclI | TGATCA | 2 cut(s) | 777, 979 |
| BcoDI | GTCTC | 2 cut(s) | 83, 1168 |
| BfaI | CTAG | 1 cut(s) | 1128 |
| BfmI | CTRYAG | 1 cut(s) | 1284 |
| BisI | GCNGC | 4 cut(s) | 349, 392, 672, 1113 |
| BlsI | GCNGC | 4 cut(s) | 350, 393, 673, 1114 |
| Bme1390I | CCNGG | 3 cut(s) | 111, 1197, 1278 |
| Bme18I | GGWCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| BmgT120I | GGNCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| BmiI | GGNNCC | 1 cut(s) | 653 |
| BmrFI | CCNGG | 3 cut(s) | 111, 1197, 1278 |
| BmrI | ACTGGG | 3 cut(s) | 798, 1017, 1028 |
| BmsI | GCATC | 2 cut(s) | 833, 944 |
| BmuI | ACTGGG | 3 cut(s) | 798, 1017, 1028 |
| BpiI | GAAGAC | 2 cut(s) | 216, 690 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1242 |
| Bpu14I | TTCGAA | 1 cut(s) | 1224 |
| BsaBI | GATNNNNATC | 3 cut(s) | 186, 258, 1191 |
| BsaI | GGTCTC | 1 cut(s) | 1168 |
| BsaJI | CCNNGG | 1 cut(s) | 555 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 584, 614 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 242, 281, 401, 589, 609, 1159 |
| Bse1I | ACTGG | 4 cut(s) | 419, 793, 1012, 1034 |
| Bse8I | GATNNNNATC | 3 cut(s) | 186, 258, 1191 |
| BseBI | CCWGG | 3 cut(s) | 111, 1197, 1278 |
| BseDI | CCNNGG | 1 cut(s) | 555 |
| BseGI | GGATG | 6 cut(s) | 199, 848, 957, 968, 1192, 1216 |
| BseJI | GATNNNNATC | 3 cut(s) | 186, 258, 1191 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 242, 281, 401, 589, 609, 1159 |
| BseMII | CTCAG | 4 cut(s) | 129, 183, 654, 899 |
| BseNI | ACTGG | 4 cut(s) | 419, 793, 1012, 1034 |
| BseRI | GAGGAG | 1 cut(s) | 1112 |
| BseXI | GCAGC | 2 cut(s) | 335, 1124 |
| BseYI | CCCAGC | 1 cut(s) | 877 |
| BshFI | GGCC | 2 cut(s) | 394, 1183 |
| BslFI | GGGAC | 3 cut(s) | 158, 351, 637 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 242, 281, 401, 589, 609, 1159 |
| BsmAI | GTCTC | 2 cut(s) | 83, 1168 |
| BsmFI | GGGAC | 3 cut(s) | 158, 351, 637 |
| BsnI | GGCC | 2 cut(s) | 394, 1183 |
| Bso31I | GGTCTC | 1 cut(s) | 1168 |
| Bsp119I | TTCGAA | 1 cut(s) | 1224 |
| Bsp143I | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| BspACI | CCGC | 3 cut(s) | 25, 391, 671 |
| BspANI | GGCC | 2 cut(s) | 394, 1183 |
| BspCNI | CTCAG | 4 cut(s) | 130, 182, 653, 900 |
| BspLI | GGNNCC | 1 cut(s) | 653 |
| BspPI | GGATC | 1 cut(s) | 267 |
| BspT104I | TTCGAA | 1 cut(s) | 1224 |
| BspTNI | GGTCTC | 1 cut(s) | 1168 |
| BsrI | ACTGG | 4 cut(s) | 419, 793, 1012, 1034 |
| BssECI | CCNNGG | 1 cut(s) | 555 |
| BssMI | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| BssNAI | GTATAC | 1 cut(s) | 580 |
| BssSI | CACGAG | 1 cut(s) | 429 |
| Bst1107I | GTATAC | 1 cut(s) | 580 |
| Bst2BI | CACGAG | 1 cut(s) | 429 |
| Bst2UI | CCWGG | 3 cut(s) | 111, 1197, 1278 |
| Bst4CI | ACNGT | 3 cut(s) | 559, 854, 1212 |
| Bst6I | CTCTTC | 1 cut(s) | 137 |
| BstBI | TTCGAA | 1 cut(s) | 1224 |
| BstC8I | GCNNGC | 1 cut(s) | 548 |
| BstDEI | CTNAG | 5 cut(s) | 138, 169, 640, 908, 1242 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 399 |
| BstF5I | GGATG | 6 cut(s) | 199, 848, 957, 968, 1192, 1216 |
| BstKTI | GATC | 7 cut(s) | 190, 256, 262, 754, 780, 957, 982 |
| BstMAI | GTCTC | 2 cut(s) | 83, 1168 |
| BstMBI | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 547, 1121 |
| BstNI | CCWGG | 3 cut(s) | 111, 1197, 1278 |
| BstNSI | RCATGY | 1 cut(s) | 550 |
| BstSCI | CCNGG | 3 cut(s) | 109, 1195, 1276 |
| BstSFI | CTRYAG | 1 cut(s) | 1284 |
| BstV1I | GCAGC | 2 cut(s) | 335, 1124 |
| BstV2I | GAAGAC | 2 cut(s) | 216, 690 |
| BstZ17I | GTATAC | 1 cut(s) | 580 |
| BsuRI | GGCC | 2 cut(s) | 394, 1183 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtsCI | GGATG | 6 cut(s) | 199, 848, 957, 968, 1192, 1216 |
| Cac8I | GCNNGC | 1 cut(s) | 548 |
| CaiI | CAGNNNCTG | 1 cut(s) | 176 |
| Cfr13I | GGNCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| Csp6I | GTAC | 2 cut(s) | 412, 1067 |
| CviAII | CATG | 6 cut(s) | 527, 547, 584, 707, 775, 1159 |
| CviQI | GTAC | 2 cut(s) | 412, 1067 |
| DdeI | CTNAG | 5 cut(s) | 138, 169, 640, 908, 1242 |
| DpnI | GATC | 7 cut(s) | 189, 255, 261, 753, 779, 956, 981 |
| DpnII | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| Eam1104I | CTCTTC | 1 cut(s) | 137 |
| EarI | CTCTTC | 1 cut(s) | 137 |
| Eco147I | AGGCCT | 1 cut(s) | 1183 |
| Eco31I | GGTCTC | 1 cut(s) | 1168 |
| Eco47I | GGWCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| Eco57I | CTGAAG | 2 cut(s) | 198, 210 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 399 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1280 |
| EcoRII | CCWGG | 3 cut(s) | 109, 1195, 1276 |
| FaeI | CATG | 6 cut(s) | 530, 550, 587, 710, 778, 1162 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 702, 734 |
| FaqI | GGGAC | 3 cut(s) | 158, 351, 637 |
| FatI | CATG | 6 cut(s) | 526, 546, 583, 706, 774, 1158 |
| FbaI | TGATCA | 2 cut(s) | 777, 979 |
| FblI | GTMKAC | 1 cut(s) | 579 |
| Fnu4HI | GCNGC | 4 cut(s) | 349, 392, 672, 1113 |
| FokI | GGATG | 6 cut(s) | 206, 855, 955, 964, 1179, 1203 |
| Fsp4HI | GCNGC | 4 cut(s) | 349, 392, 672, 1113 |
| FspBI | CTAG | 1 cut(s) | 1128 |
| GluI | GCNGC | 4 cut(s) | 349, 392, 672, 1113 |
| GsaI | CCCAGC | 1 cut(s) | 881 |
| HaeIII | GGCC | 2 cut(s) | 394, 1183 |
| Hin1II | CATG | 6 cut(s) | 530, 550, 587, 710, 778, 1162 |
| HindIII | AAGCTT | 2 cut(s) | 731, 1122 |
| HphI | GGTGA | 4 cut(s) | 16, 518, 1058, 1150 |
| Hpy166II | GTNNAC | 3 cut(s) | 428, 580, 633 |
| Hpy188I | TCNGA | 6 cut(s) | 91, 229, 264, 870, 965, 1251 |
| Hpy188III | TCNNGA | 7 cut(s) | 137, 149, 191, 257, 603, 725, 1128 |
| Hpy8I | GTNNAC | 3 cut(s) | 428, 580, 633 |
| HpyAV | CCTTC | 3 cut(s) | 1037, 1054, 1102 |
| HpyCH4III | ACNGT | 3 cut(s) | 559, 854, 1212 |
| HpyCH4V | TGCA | 7 cut(s) | 44, 50, 546, 812, 935, 1020, 1264 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 547, 1121 |
| HpyF3I | CTNAG | 5 cut(s) | 138, 169, 640, 908, 1242 |
| Hsp92II | CATG | 6 cut(s) | 530, 550, 587, 710, 778, 1162 |
| Ksp22I | TGATCA | 2 cut(s) | 777, 979 |
| Kzo9I | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| Lsp1109I | GCAGC | 2 cut(s) | 335, 1124 |
| LweI | GCATC | 2 cut(s) | 833, 944 |
| MaeI | CTAG | 1 cut(s) | 1128 |
| MaeIII | GTNAC | 1 cut(s) | 521 |
| MalI | GATC | 7 cut(s) | 189, 255, 261, 753, 779, 956, 981 |
| MboI | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| MboII | GAAGA | 9 cut(s) | 154, 191, 197, 216, 260, 263, 394, 618, 695 |
| MfeI | CAATTG | 2 cut(s) | 45, 357 |
| MluCI | AATT | 9 cut(s) | 45, 237, 333, 357, 373, 755, 763, 1055, 1091 |
| MlyI | GAGTC | 3 cut(s) | 154, 433, 1283 |
| MnlI | CCTC | 8 cut(s) | 282, 364, 474, 631, 649, 1057, 1090, 1173 |
| MseI | TTAA | 3 cut(s) | 59, 267, 1038 |
| MspR9I | CCNGG | 3 cut(s) | 111, 1197, 1278 |
| MunI | CAATTG | 2 cut(s) | 45, 357 |
| MvaI | CCWGG | 3 cut(s) | 111, 1197, 1278 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 547, 1121 |
| NdeII | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| NlaIII | CATG | 6 cut(s) | 530, 550, 587, 710, 778, 1162 |
| NlaIV | GGNNCC | 1 cut(s) | 653 |
| NspI | RCATGY | 1 cut(s) | 550 |
| NspV | TTCGAA | 1 cut(s) | 1224 |
| PaeI | GCATGC | 1 cut(s) | 550 |
| PceI | AGGCCT | 1 cut(s) | 1183 |
| PfeI | GAWTC | 8 cut(s) | 92, 152, 199, 313, 509, 865, 1075, 1141 |
| PflFI | GACNNNGTC | 1 cut(s) | 1160 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 242, 609 |
| PkrI | GCNGC | 4 cut(s) | 350, 393, 673, 1114 |
| PleI | GAGTC | 3 cut(s) | 153, 432, 1283 |
| PpsI | GAGTC | 3 cut(s) | 153, 432, 1283 |
| PpuMI | RGGWCCY | 1 cut(s) | 1280 |
| Psp5II | RGGWCCY | 1 cut(s) | 1280 |
| Psp6I | CCWGG | 3 cut(s) | 109, 1195, 1276 |
| PspFI | CCCAGC | 1 cut(s) | 877 |
| PspGI | CCWGG | 3 cut(s) | 109, 1195, 1276 |
| PspN4I | GGNNCC | 1 cut(s) | 653 |
| PspPI | GGNCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| PspPPI | RGGWCCY | 1 cut(s) | 1280 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 99, 131 |
| PstNI | CAGNNNCTG | 1 cut(s) | 176 |
| PsyI | GACNNNGTC | 1 cut(s) | 1160 |
| RsaI | GTAC | 2 cut(s) | 413, 1068 |
| RsaNI | GTAC | 2 cut(s) | 412, 1067 |
| SaqAI | TTAA | 3 cut(s) | 59, 267, 1038 |
| SatI | GCNGC | 4 cut(s) | 349, 392, 672, 1113 |
| Sau3AI | GATC | 7 cut(s) | 187, 253, 259, 751, 777, 954, 979 |
| Sau96I | GGNCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| SchI | GAGTC | 3 cut(s) | 154, 433, 1283 |
| ScrFI | CCNGG | 3 cut(s) | 111, 1197, 1278 |
| SfaNI | GCATC | 2 cut(s) | 833, 944 |
| SfcI | CTRYAG | 1 cut(s) | 1284 |
| SfuI | TTCGAA | 1 cut(s) | 1224 |
| SinI | GGWCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| SphI | GCATGC | 1 cut(s) | 550 |
| Sse9I | AATT | 9 cut(s) | 45, 237, 333, 357, 373, 755, 763, 1055, 1091 |
| SseBI | AGGCCT | 1 cut(s) | 1183 |
| SsiI | CCGC | 3 cut(s) | 25, 391, 671 |
| SspMI | CTAG | 1 cut(s) | 1128 |
| StuI | AGGCCT | 1 cut(s) | 1183 |
| StyD4I | CCNGG | 3 cut(s) | 109, 1195, 1276 |
| TaaI | ACNGT | 3 cut(s) | 559, 854, 1212 |
| TaqI | TCGA | 1 cut(s) | 1224 |
| TasI | AATT | 9 cut(s) | 45, 237, 333, 357, 373, 755, 763, 1055, 1091 |
| TatI | WGTACW | 1 cut(s) | 411 |
| TauI | GCSGC | 2 cut(s) | 394, 674 |
| TfiI | GAWTC | 8 cut(s) | 92, 152, 199, 313, 509, 865, 1075, 1141 |
| Tru1I | TTAA | 3 cut(s) | 59, 267, 1038 |
| Tru9I | TTAA | 3 cut(s) | 59, 267, 1038 |
| TseI | GCWGC | 2 cut(s) | 348, 1112 |
| TspDTI | ATGAA | 9 cut(s) | 23, 120, 198, 395, 696, 710, 723, 846, 935 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1160 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 242, 609 |
| VpaK11BI | GGWCC | 5 cut(s) | 329, 600, 651, 1199, 1280 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 399 |
| XapI | RAATTY | 1 cut(s) | 763 |
| XbaI | TCTAGA | 1 cut(s) | 1127 |
| XceI | RCATGY | 1 cut(s) | 550 |
| XmiI | GTMKAC | 1 cut(s) | 579 |
| XspI | CTAG | 1 cut(s) | 1128 |