Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 135, 826 |
| AciI | CCGC | 2 cut(s) | 24, 323 |
| AclWI | GGATC | 2 cut(s) | 377, 390 |
| AcsI | RAATTY | 1 cut(s) | 270 |
| AfaI | GTAC | 2 cut(s) | 259, 521 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 594 |
| AgsI | TTSAA | 5 cut(s) | 127, 694, 715, 743, 752 |
| AhlI | ACTAGT | 1 cut(s) | 313 |
| AjnI | CCWGG | 2 cut(s) | 117, 377 |
| AleI | CACNNNNGTG | 1 cut(s) | 677 |
| AluBI | AGCT | 3 cut(s) | 305, 614, 656 |
| AluI | AGCT | 3 cut(s) | 305, 614, 656 |
| Alw26I | GTCTC | 2 cut(s) | 11, 335 |
| AlwI | GGATC | 2 cut(s) | 377, 390 |
| AoxI | GGCC | 3 cut(s) | 179, 600, 735 |
| ApeKI | GCWGC | 1 cut(s) | 653 |
| ApoI | RAATTY | 1 cut(s) | 270 |
| AspS9I | GGNCC | 1 cut(s) | 375 |
| AsuHPI | GGTGA | 2 cut(s) | 587, 719 |
| AvaII | GGWCC | 1 cut(s) | 375 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 249, 282 |
| BamHI | GGATCC | 1 cut(s) | 382 |
| BauI | CACGAG | 1 cut(s) | 780 |
| BbvI | GCAGC | 1 cut(s) | 665 |
| BceAI | ACGGC | 1 cut(s) | 722 |
| BciT130I | CCWGG | 2 cut(s) | 119, 379 |
| BciVI | GTATCC | 1 cut(s) | 355 |
| BcoDI | GTCTC | 2 cut(s) | 11, 335 |
| BcuI | ACTAGT | 1 cut(s) | 313 |
| BfaI | CTAG | 3 cut(s) | 59, 314, 866 |
| BfmI | CTRYAG | 2 cut(s) | 417, 902 |
| BfuI | GTATCC | 1 cut(s) | 355 |
| BglII | AGATCT | 1 cut(s) | 352 |
| BisI | GCNGC | 2 cut(s) | 25, 654 |
| BlsI | GCNGC | 2 cut(s) | 26, 655 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 379 |
| Bme18I | GGWCC | 1 cut(s) | 375 |
| BmgT120I | GGNCC | 1 cut(s) | 375 |
| BmiI | GGNNCC | 2 cut(s) | 384, 621 |
| BmrFI | CCNGG | 2 cut(s) | 119, 379 |
| BmsI | GCATC | 2 cut(s) | 49, 443 |
| Bpu10I | CCTNAGC | 1 cut(s) | 615 |
| BpuEI | CTTGAG | 1 cut(s) | 466 |
| BsaJI | CCNNGG | 3 cut(s) | 117, 378, 830 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 594 |
| Bse1I | ACTGG | 1 cut(s) | 577 |
| BseBI | CCWGG | 2 cut(s) | 119, 379 |
| BseDI | CCNNGG | 3 cut(s) | 117, 378, 830 |
| BseGI | GGATG | 1 cut(s) | 283 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 594 |
| BseMII | CTCAG | 1 cut(s) | 519 |
| BseNI | ACTGG | 1 cut(s) | 577 |
| BseXI | GCAGC | 1 cut(s) | 665 |
| BshFI | GGCC | 3 cut(s) | 181, 602, 737 |
| BsiSI | CCGG | 1 cut(s) | 231 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 594 |
| BsmAI | GTCTC | 2 cut(s) | 11, 335 |
| BsnI | GGCC | 3 cut(s) | 181, 602, 737 |
| Bsp143I | GATC | 3 cut(s) | 215, 352, 382 |
| Bsp19I | CCATGG | 1 cut(s) | 830 |
| BspACI | CCGC | 2 cut(s) | 24, 323 |
| BspANI | GGCC | 3 cut(s) | 181, 602, 737 |
| BspCNI | CTCAG | 1 cut(s) | 518 |
| BspHI | TCATGA | 1 cut(s) | 532 |
| BspLI | GGNNCC | 2 cut(s) | 384, 621 |
| BspPI | GGATC | 2 cut(s) | 377, 390 |
| BsrI | ACTGG | 1 cut(s) | 577 |
| BssECI | CCNNGG | 3 cut(s) | 117, 378, 830 |
| BssMI | GATC | 3 cut(s) | 215, 352, 382 |
| BssSI | CACGAG | 1 cut(s) | 780 |
| BssT1I | CCWWGG | 1 cut(s) | 830 |
| Bst2BI | CACGAG | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 379 |
| Bst4CI | ACNGT | 2 cut(s) | 93, 346 |
| BstC8I | GCNNGC | 1 cut(s) | 651 |
| BstDEI | CTNAG | 2 cut(s) | 505, 615 |
| BstDSI | CCRYGG | 1 cut(s) | 830 |
| BstEII | GGTNACC | 1 cut(s) | 575 |
| BstF5I | GGATG | 1 cut(s) | 283 |
| BstKTI | GATC | 3 cut(s) | 218, 355, 385 |
| BstMAI | GTCTC | 2 cut(s) | 11, 335 |
| BstMBI | GATC | 3 cut(s) | 215, 352, 382 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 398 |
| BstNI | CCWGG | 2 cut(s) | 119, 379 |
| BstPI | GGTNACC | 1 cut(s) | 575 |
| BstSCI | CCNGG | 2 cut(s) | 117, 377 |
| BstSFI | CTRYAG | 2 cut(s) | 417, 902 |
| BstV1I | GCAGC | 1 cut(s) | 665 |
| BstX2I | RGATCY | 2 cut(s) | 352, 382 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 631, 679 |
| BstYI | RGATCY | 2 cut(s) | 352, 382 |
| BsuI | GTATCC | 1 cut(s) | 355 |
| BsuRI | GGCC | 3 cut(s) | 181, 602, 737 |
| BtgI | CCRYGG | 1 cut(s) | 830 |
| BtsCI | GGATG | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 1 cut(s) | 651 |
| CciI | TCATGA | 1 cut(s) | 532 |
| Cfr13I | GGNCC | 1 cut(s) | 375 |
| Csp6I | GTAC | 2 cut(s) | 258, 520 |
| CviAII | CATG | 7 cut(s) | 64, 372, 398, 424, 477, 533, 831 |
| CviQI | GTAC | 2 cut(s) | 258, 520 |
| DdeI | CTNAG | 2 cut(s) | 505, 615 |
| DpnI | GATC | 3 cut(s) | 217, 354, 384 |
| DpnII | GATC | 3 cut(s) | 215, 352, 382 |
| Eco130I | CCWWGG | 1 cut(s) | 830 |
| Eco147I | AGGCCT | 2 cut(s) | 181, 602 |
| Eco47I | GGWCC | 1 cut(s) | 375 |
| Eco91I | GGTNACC | 1 cut(s) | 575 |
| EcoO65I | GGTNACC | 1 cut(s) | 575 |
| EcoRII | CCWGG | 2 cut(s) | 117, 377 |
| EcoT14I | CCWWGG | 1 cut(s) | 830 |
| ErhI | CCWWGG | 1 cut(s) | 830 |
| FaeI | CATG | 7 cut(s) | 67, 375, 401, 427, 480, 536, 834 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 29, 61 |
| FatI | CATG | 7 cut(s) | 63, 371, 397, 423, 476, 532, 830 |
| FblI | GTMKAC | 2 cut(s) | 135, 826 |
| Fnu4HI | GCNGC | 2 cut(s) | 25, 654 |
| FokI | GGATG | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 2 cut(s) | 25, 654 |
| FspBI | CTAG | 3 cut(s) | 59, 314, 866 |
| GluI | GCNGC | 2 cut(s) | 25, 654 |
| HaeIII | GGCC | 3 cut(s) | 181, 602, 737 |
| HapII | CCGG | 1 cut(s) | 231 |
| Hin1II | CATG | 7 cut(s) | 67, 375, 401, 427, 480, 536, 834 |
| HinfI | GANTC | 1 cut(s) | 289 |
| HpaII | CCGG | 1 cut(s) | 231 |
| HphI | GGTGA | 2 cut(s) | 587, 719 |
| Hpy166II | GTNNAC | 4 cut(s) | 136, 522, 731, 827 |
| Hpy188I | TCNGA | 2 cut(s) | 352, 466 |
| Hpy188III | TCNNGA | 1 cut(s) | 533 |
| Hpy8I | GTNNAC | 4 cut(s) | 136, 522, 731, 827 |
| HpyAV | CCTTC | 3 cut(s) | 192, 592, 674 |
| HpyCH4III | ACNGT | 2 cut(s) | 93, 346 |
| HpyCH4V | TGCA | 1 cut(s) | 476 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 398 |
| HpyF3I | CTNAG | 2 cut(s) | 505, 615 |
| Hsp92II | CATG | 7 cut(s) | 67, 375, 401, 427, 480, 536, 834 |
| Kzo9I | GATC | 3 cut(s) | 215, 352, 382 |
| LpnPI | CCDG | 9 cut(s) | 5, 104, 131, 244, 364, 391, 399, 558, 719 |
| Lsp1109I | GCAGC | 1 cut(s) | 665 |
| LweI | GCATC | 2 cut(s) | 49, 443 |
| MaeI | CTAG | 3 cut(s) | 59, 314, 866 |
| MaeIII | GTNAC | 5 cut(s) | 87, 298, 497, 548, 575 |
| MalI | GATC | 3 cut(s) | 217, 354, 384 |
| MboI | GATC | 3 cut(s) | 215, 352, 382 |
| MboII | GAAGA | 1 cut(s) | 659 |
| MfeI | CAATTG | 1 cut(s) | 246 |
| MflI | RGATCY | 2 cut(s) | 352, 382 |
| MluCI | AATT | 4 cut(s) | 246, 270, 715, 859 |
| MmeI | TCCRAC | 1 cut(s) | 339 |
| MnlI | CCTC | 7 cut(s) | 78, 111, 124, 202, 488, 846, 880 |
| MseI | TTAA | 2 cut(s) | 36, 510 |
| MslI | CAYNNNNRTG | 1 cut(s) | 677 |
| MspI | CCGG | 1 cut(s) | 231 |
| MspR9I | CCNGG | 2 cut(s) | 119, 379 |
| MunI | CAATTG | 1 cut(s) | 246 |
| MvaI | CCWGG | 2 cut(s) | 119, 379 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 398 |
| NcoI | CCATGG | 1 cut(s) | 830 |
| NdeII | GATC | 3 cut(s) | 215, 352, 382 |
| NlaIII | CATG | 7 cut(s) | 67, 375, 401, 427, 480, 536, 834 |
| NlaIV | GGNNCC | 2 cut(s) | 384, 621 |
| NmuCI | GTSAC | 1 cut(s) | 575 |
| OliI | CACNNNNGTG | 1 cut(s) | 677 |
| PagI | TCATGA | 1 cut(s) | 532 |
| PceI | AGGCCT | 2 cut(s) | 181, 602 |
| PfeI | GAWTC | 1 cut(s) | 289 |
| PkrI | GCNGC | 2 cut(s) | 26, 655 |
| Psp6I | CCWGG | 2 cut(s) | 117, 377 |
| PspEI | GGTNACC | 1 cut(s) | 575 |
| PspGI | CCWGG | 2 cut(s) | 117, 377 |
| PspN4I | GGNNCC | 2 cut(s) | 384, 621 |
| PspPI | GGNCC | 1 cut(s) | 375 |
| PsuI | RGATCY | 2 cut(s) | 352, 382 |
| RsaI | GTAC | 2 cut(s) | 259, 521 |
| RsaNI | GTAC | 2 cut(s) | 258, 520 |
| RseI | CAYNNNNRTG | 1 cut(s) | 677 |
| SaqAI | TTAA | 2 cut(s) | 36, 510 |
| SatI | GCNGC | 2 cut(s) | 25, 654 |
| Sau3AI | GATC | 3 cut(s) | 215, 352, 382 |
| Sau96I | GGNCC | 1 cut(s) | 375 |
| ScrFI | CCNGG | 2 cut(s) | 119, 379 |
| SfaNI | GCATC | 2 cut(s) | 49, 443 |
| SfcI | CTRYAG | 2 cut(s) | 417, 902 |
| SinI | GGWCC | 1 cut(s) | 375 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 677 |
| SmlI | CTYRAG | 1 cut(s) | 445 |
| SmoI | CTYRAG | 1 cut(s) | 445 |
| SpeI | ACTAGT | 1 cut(s) | 313 |
| Sse9I | AATT | 4 cut(s) | 246, 270, 715, 859 |
| SseBI | AGGCCT | 2 cut(s) | 181, 602 |
| SsiI | CCGC | 2 cut(s) | 24, 323 |
| SspMI | CTAG | 3 cut(s) | 59, 314, 866 |
| StuI | AGGCCT | 2 cut(s) | 181, 602 |
| StyD4I | CCNGG | 2 cut(s) | 117, 377 |
| StyI | CCWWGG | 1 cut(s) | 830 |
| TaaI | ACNGT | 2 cut(s) | 93, 346 |
| TaqI | TCGA | 1 cut(s) | 882 |
| TasI | AATT | 4 cut(s) | 246, 270, 715, 859 |
| TauI | GCSGC | 1 cut(s) | 27 |
| TfiI | GAWTC | 1 cut(s) | 289 |
| Tru1I | TTAA | 2 cut(s) | 36, 510 |
| Tru9I | TTAA | 2 cut(s) | 36, 510 |
| TseFI | GTSAC | 1 cut(s) | 575 |
| TseI | GCWGC | 1 cut(s) | 653 |
| Tsp45I | GTSAC | 1 cut(s) | 575 |
| TspDTI | ATGAA | 4 cut(s) | 360, 386, 440, 552 |
| VpaK11BI | GGWCC | 1 cut(s) | 375 |
| XapI | RAATTY | 1 cut(s) | 270 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 837 |
| XmiI | GTMKAC | 2 cut(s) | 135, 826 |
| XspI | CTAG | 3 cut(s) | 59, 314, 866 |