Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 12 - 107 | 5.4e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 38, 104, 176 |
| AcsI | RAATTY | 3 cut(s) | 20, 184, 345 |
| AgsI | TTSAA | 3 cut(s) | 20, 152, 184 |
| ApeKI | GCWGC | 1 cut(s) | 95 |
| ApoI | RAATTY | 3 cut(s) | 20, 184, 345 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 231, 263 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 63, 167, 299 |
| BbvI | GCAGC | 1 cut(s) | 107 |
| BccI | CCATC | 1 cut(s) | 82 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BisI | GCNGC | 3 cut(s) | 39, 96, 177 |
| BlsI | GCNGC | 3 cut(s) | 40, 97, 178 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BpuEI | CTTGAG | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 1 cut(s) | 58 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseDI | CCNNGG | 1 cut(s) | 58 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseXI | GCAGC | 1 cut(s) | 107 |
| BspACI | CCGC | 3 cut(s) | 38, 104, 176 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BssECI | CCNNGG | 1 cut(s) | 58 |
| BssT1I | CCWWGG | 1 cut(s) | 58 |
| BstC8I | GCNNGC | 1 cut(s) | 81 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 44, 101 |
| BstNSI | RCATGY | 2 cut(s) | 83, 224 |
| BstV1I | GCAGC | 1 cut(s) | 107 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 1 cut(s) | 385 |
| Cac8I | GCNNGC | 1 cut(s) | 81 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 87, 122 |
| CviAII | CATG | 4 cut(s) | 80, 221, 298, 351 |
| CviJI | RGCY | 4 cut(s) | 47, 134, 179, 305 |
| CviKI_1 | RGCY | 4 cut(s) | 47, 134, 179, 305 |
| Eco130I | CCWWGG | 1 cut(s) | 58 |
| EcoRI | GAATTC | 1 cut(s) | 20 |
| EcoT14I | CCWWGG | 1 cut(s) | 58 |
| ErhI | CCWWGG | 1 cut(s) | 58 |
| FaeI | CATG | 4 cut(s) | 83, 224, 301, 354 |
| FaiI | YATR | 6 cut(s) | 50, 81, 140, 222, 299, 352 |
| FatI | CATG | 4 cut(s) | 79, 220, 297, 350 |
| Fnu4HI | GCNGC | 3 cut(s) | 39, 96, 177 |
| FokI | GGATG | 1 cut(s) | 203 |
| Fsp4HI | GCNGC | 3 cut(s) | 39, 96, 177 |
| FspBI | CTAG | 1 cut(s) | 314 |
| GluI | GCNGC | 3 cut(s) | 39, 96, 177 |
| Hin1II | CATG | 4 cut(s) | 83, 224, 301, 354 |
| HphI | GGTGA | 4 cut(s) | 16, 63, 167, 299 |
| Hpy188I | TCNGA | 1 cut(s) | 202 |
| HpyAV | CCTTC | 2 cut(s) | 146, 284 |
| HpyCH4V | TGCA | 4 cut(s) | 52, 79, 83, 161 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 44, 101 |
| Hsp92II | CATG | 4 cut(s) | 83, 224, 301, 354 |
| LpnPI | CCDG | 1 cut(s) | 89 |
| Lsp1109I | GCAGC | 1 cut(s) | 107 |
| LweI | GCATC | 1 cut(s) | 148 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MaeIII | GTNAC | 3 cut(s) | 4, 64, 223 |
| MboII | GAAGA | 1 cut(s) | 239 |
| MluCI | AATT | 4 cut(s) | 20, 184, 345, 403 |
| MnlI | CCTC | 4 cut(s) | 35, 79, 187, 388 |
| MseI | TTAA | 2 cut(s) | 267, 412 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 44, 101 |
| NlaIII | CATG | 4 cut(s) | 83, 224, 301, 354 |
| NmuCI | GTSAC | 3 cut(s) | 4, 64, 223 |
| NspI | RCATGY | 2 cut(s) | 83, 224 |
| PaeI | GCATGC | 1 cut(s) | 83 |
| PkrI | GCNGC | 3 cut(s) | 40, 97, 178 |
| SaqAI | TTAA | 2 cut(s) | 267, 412 |
| SatI | GCNGC | 3 cut(s) | 39, 96, 177 |
| SetI | ASST | 3 cut(s) | 71, 157, 198 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SmlI | CTYRAG | 1 cut(s) | 276 |
| SmoI | CTYRAG | 1 cut(s) | 276 |
| SphI | GCATGC | 1 cut(s) | 83 |
| Sse9I | AATT | 4 cut(s) | 20, 184, 345, 403 |
| SsiI | CCGC | 3 cut(s) | 38, 104, 176 |
| SspMI | CTAG | 1 cut(s) | 314 |
| StyI | CCWWGG | 1 cut(s) | 58 |
| TaqI | TCGA | 2 cut(s) | 250, 393 |
| TasI | AATT | 4 cut(s) | 20, 184, 345, 403 |
| TauI | GCSGC | 2 cut(s) | 41, 179 |
| Tru1I | TTAA | 2 cut(s) | 267, 412 |
| Tru9I | TTAA | 2 cut(s) | 267, 412 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseFI | GTSAC | 3 cut(s) | 4, 64, 223 |
| TseI | GCWGC | 1 cut(s) | 95 |
| Tsp45I | GTSAC | 3 cut(s) | 4, 64, 223 |
| TspDTI | ATGAA | 4 cut(s) | 249, 329, 339, 397 |
| TspRI | CASTG | 1 cut(s) | 385 |
| XapI | RAATTY | 3 cut(s) | 20, 184, 345 |
| XceI | RCATGY | 2 cut(s) | 83, 224 |
| XspI | CTAG | 1 cut(s) | 314 |