Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 96 | 2.6e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 62 |
| AccII | CGCG | 1 cut(s) | 16 |
| AciI | CCGC | 1 cut(s) | 16 |
| AcsI | RAATTY | 2 cut(s) | 107, 157 |
| AcuI | CTGAAG | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 100, 358 |
| AgsI | TTSAA | 1 cut(s) | 151 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 143, 175 |
| AluBI | AGCT | 4 cut(s) | 8, 86, 269, 281 |
| AluI | AGCT | 4 cut(s) | 8, 86, 269, 281 |
| Ama87I | CYCGRG | 1 cut(s) | 378 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApeKI | GCWGC | 2 cut(s) | 5, 143 |
| ApoI | RAATTY | 2 cut(s) | 107, 157 |
| AspLEI | GCGC | 2 cut(s) | 16, 186 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AsuC2I | CCSGG | 2 cut(s) | 68, 251 |
| AvaI | CYCGRG | 1 cut(s) | 378 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 2 cut(s) | 68, 238 |
| BbvI | GCAGC | 2 cut(s) | 17, 130 |
| BccI | CCATC | 1 cut(s) | 130 |
| BcnI | CCSGG | 2 cut(s) | 68, 251 |
| BfaI | CTAG | 1 cut(s) | 291 |
| BfuAI | ACCTGC | 1 cut(s) | 62 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 68 |
| BglII | AGATCT | 1 cut(s) | 234 |
| BisI | GCNGC | 2 cut(s) | 6, 144 |
| BlsI | GCNGC | 2 cut(s) | 7, 145 |
| Bme1390I | CCNGG | 2 cut(s) | 68, 251 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmeT110I | CYCGRG | 1 cut(s) | 378 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmiI | GGNNCC | 1 cut(s) | 330 |
| BmrFI | CCNGG | 2 cut(s) | 68, 251 |
| BmsI | GCATC | 1 cut(s) | 396 |
| BpiI | GAAGAC | 2 cut(s) | 68, 238 |
| BpuEI | CTTGAG | 1 cut(s) | 137 |
| BpuMI | CCSGG | 2 cut(s) | 68, 251 |
| Bsa29I | ATCGAT | 2 cut(s) | 192, 274 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 100, 358 |
| BseCI | ATCGAT | 2 cut(s) | 192, 274 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 100, 358 |
| BseRI | GAGGAG | 1 cut(s) | 338 |
| BseXI | GCAGC | 2 cut(s) | 17, 130 |
| Bsh1236I | CGCG | 1 cut(s) | 16 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BshVI | ATCGAT | 2 cut(s) | 192, 274 |
| BsiHKCI | CYCGRG | 1 cut(s) | 378 |
| BsiSI | CCGG | 2 cut(s) | 67, 250 |
| BslFI | GGGAC | 2 cut(s) | 116, 382 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 100, 358 |
| BsmFI | GGGAC | 2 cut(s) | 116, 382 |
| BsnI | GGCC | 1 cut(s) | 62 |
| BsoBI | CYCGRG | 1 cut(s) | 378 |
| Bsp143I | GATC | 2 cut(s) | 170, 234 |
| BspACI | CCGC | 1 cut(s) | 16 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspDI | ATCGAT | 2 cut(s) | 192, 274 |
| BspFNI | CGCG | 1 cut(s) | 16 |
| BspLI | GGNNCC | 1 cut(s) | 330 |
| BspMI | ACCTGC | 1 cut(s) | 62 |
| BssMI | GATC | 2 cut(s) | 170, 234 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 2 cut(s) | 82, 297 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 356 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstFNI | CGCG | 1 cut(s) | 16 |
| BstHHI | GCGC | 2 cut(s) | 16, 186 |
| BstKTI | GATC | 2 cut(s) | 173, 237 |
| BstMBI | GATC | 2 cut(s) | 170, 234 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 68, 287 |
| BstSCI | CCNGG | 2 cut(s) | 66, 249 |
| BstUI | CGCG | 1 cut(s) | 16 |
| BstV1I | GCAGC | 2 cut(s) | 17, 130 |
| BstV2I | GAAGAC | 2 cut(s) | 68, 238 |
| BstX2I | RGATCY | 1 cut(s) | 234 |
| BstYI | RGATCY | 1 cut(s) | 234 |
| Bsu15I | ATCGAT | 2 cut(s) | 192, 274 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BsuTUI | ATCGAT | 2 cut(s) | 192, 274 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| BtsIMutI | CAGTG | 1 cut(s) | 131 |
| BveI | ACCTGC | 1 cut(s) | 62 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| CfoI | GCGC | 2 cut(s) | 16, 186 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| ClaI | ATCGAT | 2 cut(s) | 192, 274 |
| CviAII | CATG | 1 cut(s) | 242 |
| CviJI | RGCY | 8 cut(s) | 8, 62, 86, 143, 269, 281, 329, 390 |
| CviKI_1 | RGCY | 8 cut(s) | 8, 62, 86, 143, 269, 281, 329, 390 |
| DdeI | CTNAG | 2 cut(s) | 82, 297 |
| DpnI | GATC | 2 cut(s) | 172, 236 |
| DpnII | GATC | 2 cut(s) | 170, 234 |
| Eco147I | AGGCCT | 1 cut(s) | 62 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 1 cut(s) | 195 |
| Eco88I | CYCGRG | 1 cut(s) | 378 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 356 |
| EcoRI | GAATTC | 1 cut(s) | 107 |
| EcoT22I | ATGCAT | 1 cut(s) | 411 |
| FaeI | CATG | 1 cut(s) | 245 |
| FaiI | YATR | 9 cut(s) | 11, 48, 50, 113, 208, 243, 316, 357, 411 |
| FaqI | GGGAC | 2 cut(s) | 116, 382 |
| FatI | CATG | 1 cut(s) | 241 |
| FauNDI | CATATG | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 144 |
| FokI | GGATG | 1 cut(s) | 359 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 144 |
| FspBI | CTAG | 1 cut(s) | 291 |
| GlaI | GCGC | 2 cut(s) | 15, 185 |
| GluI | GCNGC | 2 cut(s) | 6, 144 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| HapII | CCGG | 2 cut(s) | 67, 250 |
| HhaI | GCGC | 2 cut(s) | 16, 186 |
| Hin1II | CATG | 1 cut(s) | 245 |
| Hin6I | GCGC | 2 cut(s) | 14, 184 |
| HinP1I | GCGC | 2 cut(s) | 14, 184 |
| HinfI | GANTC | 1 cut(s) | 151 |
| HpaII | CCGG | 2 cut(s) | 67, 250 |
| Hpy188I | TCNGA | 2 cut(s) | 156, 175 |
| Hpy188III | TCNNGA | 1 cut(s) | 344 |
| HpyCH4IV | ACGT | 1 cut(s) | 395 |
| HpyCH4V | TGCA | 3 cut(s) | 146, 375, 409 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 68, 287 |
| HpyF3I | CTNAG | 2 cut(s) | 82, 297 |
| HpySE526I | ACGT | 1 cut(s) | 395 |
| Hsp92II | CATG | 1 cut(s) | 245 |
| HspAI | GCGC | 2 cut(s) | 14, 184 |
| Kzo9I | GATC | 2 cut(s) | 170, 234 |
| LmnI | GCTCC | 1 cut(s) | 334 |
| LpnPI | CCDG | 6 cut(s) | 57, 76, 80, 263, 329, 345 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 130 |
| LweI | GCATC | 1 cut(s) | 396 |
| MaeI | CTAG | 1 cut(s) | 291 |
| MaeII | ACGT | 1 cut(s) | 395 |
| MalI | GATC | 2 cut(s) | 172, 236 |
| MboI | GATC | 2 cut(s) | 170, 234 |
| MboII | GAAGA | 2 cut(s) | 68, 238 |
| MflI | RGATCY | 1 cut(s) | 234 |
| MluCI | AATT | 4 cut(s) | 107, 157, 228, 370 |
| MnlI | CCTC | 9 cut(s) | 46, 52, 157, 316, 319, 352, 362, 374, 412 |
| Mph1103I | ATGCAT | 1 cut(s) | 411 |
| MseI | TTAA | 3 cut(s) | 231, 306, 418 |
| MspI | CCGG | 2 cut(s) | 67, 250 |
| MspR9I | CCNGG | 2 cut(s) | 68, 251 |
| MvnI | CGCG | 1 cut(s) | 16 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 68, 287 |
| NciI | CCSGG | 2 cut(s) | 68, 251 |
| NdeI | CATATG | 1 cut(s) | 48 |
| NdeII | GATC | 2 cut(s) | 170, 234 |
| NlaIII | CATG | 1 cut(s) | 245 |
| NlaIV | GGNNCC | 1 cut(s) | 330 |
| NsiI | ATGCAT | 1 cut(s) | 411 |
| PaeR7I | CTCGAG | 1 cut(s) | 378 |
| PceI | AGGCCT | 1 cut(s) | 62 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 401 |
| PfeI | GAWTC | 1 cut(s) | 151 |
| PfoI | TCCNGGA | 1 cut(s) | 249 |
| PkrI | GCNGC | 2 cut(s) | 7, 145 |
| PspN4I | GGNNCC | 1 cut(s) | 330 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| PspXI | VCTCGAGB | 1 cut(s) | 378 |
| PsuI | RGATCY | 1 cut(s) | 234 |
| SaqAI | TTAA | 3 cut(s) | 231, 306, 418 |
| SatI | GCNGC | 2 cut(s) | 6, 144 |
| Sau3AI | GATC | 2 cut(s) | 170, 234 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| ScrFI | CCNGG | 2 cut(s) | 68, 251 |
| SetI | ASST | 7 cut(s) | 10, 76, 88, 271, 283, 385, 398 |
| SfaNI | GCATC | 1 cut(s) | 396 |
| Sfr274I | CTCGAG | 1 cut(s) | 378 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SlaI | CTCGAG | 1 cut(s) | 378 |
| SmlI | CTYRAG | 2 cut(s) | 116, 378 |
| SmoI | CTYRAG | 2 cut(s) | 116, 378 |
| Sse9I | AATT | 4 cut(s) | 107, 157, 228, 370 |
| SseBI | AGGCCT | 1 cut(s) | 62 |
| SsiI | CCGC | 1 cut(s) | 16 |
| SspMI | CTAG | 1 cut(s) | 291 |
| StuI | AGGCCT | 1 cut(s) | 62 |
| StyD4I | CCNGG | 2 cut(s) | 66, 249 |
| TaiI | ACGT | 1 cut(s) | 398 |
| TaqI | TCGA | 4 cut(s) | 192, 274, 379, 404 |
| TaqII | GACCGA | 1 cut(s) | 183 |
| TasI | AATT | 4 cut(s) | 107, 157, 228, 370 |
| TfiI | GAWTC | 1 cut(s) | 151 |
| Tru1I | TTAA | 3 cut(s) | 231, 306, 418 |
| Tru9I | TTAA | 3 cut(s) | 231, 306, 418 |
| TscAI | CASTG | 1 cut(s) | 138 |
| TseI | GCWGC | 2 cut(s) | 5, 143 |
| TspDTI | ATGAA | 1 cut(s) | 100 |
| TspRI | CASTG | 1 cut(s) | 138 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 356 |
| XapI | RAATTY | 2 cut(s) | 107, 157 |
| XhoI | CTCGAG | 1 cut(s) | 378 |
| XspI | CTAG | 1 cut(s) | 291 |
| Zsp2I | ATGCAT | 1 cut(s) | 411 |