Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 185 |
| Acc16I | TGCGCA | 1 cut(s) | 429 |
| Acc36I | ACCTGC | 1 cut(s) | 185 |
| Acc65I | GGTACC | 1 cut(s) | 511 |
| AccB1I | GGYRCC | 2 cut(s) | 142, 511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 153 |
| AccII | CGCG | 6 cut(s) | 55, 103, 127, 175, 177, 264 |
| AciI | CCGC | 9 cut(s) | 63, 79, 101, 125, 127, 240, 275, 515, 740 |
| AclWI | GGATC | 2 cut(s) | 108, 512 |
| AcoI | YGGCCR | 1 cut(s) | 449 |
| AcsI | RAATTY | 1 cut(s) | 832 |
| AdeI | CACNNNGTG | 1 cut(s) | 335 |
| AfaI | GTAC | 3 cut(s) | 460, 513, 868 |
| AfeI | AGCGCT | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 153, 704, 705 |
| AflII | CTTAAG | 2 cut(s) | 617, 700 |
| AflIII | ACRYGT | 1 cut(s) | 600 |
| AgsI | TTSAA | 5 cut(s) | 10, 349, 416, 465, 830 |
| AjnI | CCWGG | 2 cut(s) | 446, 776 |
| Alw21I | GWGCWC | 1 cut(s) | 256 |
| Alw26I | GTCTC | 1 cut(s) | 97 |
| AlwI | GGATC | 2 cut(s) | 108, 512 |
| Aor51HI | AGCGCT | 1 cut(s) | 166 |
| AoxI | GGCC | 3 cut(s) | 98, 122, 449 |
| ApeKI | GCWGC | 9 cut(s) | 209, 218, 247, 272, 425, 572, 800, 803, 862 |
| ApoI | RAATTY | 1 cut(s) | 832 |
| Asp718I | GGTACC | 1 cut(s) | 511 |
| AspLEI | GCGC | 8 cut(s) | 167, 175, 177, 179, 194, 264, 430, 544 |
| AspS9I | GGNCC | 2 cut(s) | 98, 643 |
| AsuHPI | GGTGA | 1 cut(s) | 209 |
| AvaII | GGWCC | 1 cut(s) | 643 |
| AxyI | CCTNAGG | 1 cut(s) | 519 |
| BaeGI | GKGCMC | 1 cut(s) | 234 |
| BalI | TGGCCA | 1 cut(s) | 451 |
| BanI | GGYRCC | 2 cut(s) | 142, 511 |
| BanII | GRGCYC | 1 cut(s) | 616 |
| Bbv12I | GWGCWC | 1 cut(s) | 256 |
| BbvI | GCAGC | 9 cut(s) | 196, 230, 259, 259, 412, 584, 787, 790, 849 |
| BccI | CCATC | 3 cut(s) | 634, 654, 722 |
| BciT130I | CCWGG | 2 cut(s) | 448, 778 |
| BciVI | GTATCC | 1 cut(s) | 335 |
| BclI | TGATCA | 1 cut(s) | 651 |
| BcoDI | GTCTC | 1 cut(s) | 97 |
| BfaI | CTAG | 2 cut(s) | 567, 809 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BfoI | RGCGCY | 2 cut(s) | 168, 545 |
| BfrI | CTTAAG | 2 cut(s) | 617, 700 |
| BfuAI | ACCTGC | 1 cut(s) | 185 |
| BfuI | GTATCC | 1 cut(s) | 335 |
| Bme1390I | CCNGG | 2 cut(s) | 448, 778 |
| Bme18I | GGWCC | 1 cut(s) | 643 |
| BmgT120I | GGNCC | 2 cut(s) | 98, 643 |
| BmiI | GGNNCC | 2 cut(s) | 144, 513 |
| BmrFI | CCNGG | 2 cut(s) | 448, 778 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BpmI | CTGGAG | 2 cut(s) | 520, 547 |
| BpuEI | CTTGAG | 1 cut(s) | 662 |
| Bsa29I | ATCGAT | 1 cut(s) | 726 |
| BsaJI | CCNNGG | 2 cut(s) | 125, 777 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 153, 704, 705 |
| Bse1I | ACTGG | 1 cut(s) | 874 |
| Bse21I | CCTNAGG | 1 cut(s) | 519 |
| Bse3DI | GCAATG | 3 cut(s) | 147, 315, 879 |
| BseBI | CCWGG | 2 cut(s) | 448, 778 |
| BseCI | ATCGAT | 1 cut(s) | 726 |
| BseDI | CCNNGG | 2 cut(s) | 125, 777 |
| BseGI | GGATG | 1 cut(s) | 787 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 153, 704, 705 |
| BseMI | GCAATG | 3 cut(s) | 147, 315, 879 |
| BseMII | CTCAG | 2 cut(s) | 108, 323 |
| BseNI | ACTGG | 1 cut(s) | 874 |
| BsePI | GCGCGC | 2 cut(s) | 173, 175 |
| BseRI | GAGGAG | 2 cut(s) | 317, 872 |
| BseSI | GKGCMC | 1 cut(s) | 234 |
| BseXI | GCAGC | 9 cut(s) | 196, 230, 259, 259, 412, 584, 787, 790, 849 |
| BseYI | CCCAGC | 1 cut(s) | 179 |
| Bsh1236I | CGCG | 6 cut(s) | 55, 103, 127, 175, 177, 264 |
| BshFI | GGCC | 3 cut(s) | 100, 124, 451 |
| BshNI | GGYRCC | 2 cut(s) | 142, 511 |
| BshVI | ATCGAT | 1 cut(s) | 726 |
| BsiHKAI | GWGCWC | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 153, 704, 705 |
| BsmAI | GTCTC | 1 cut(s) | 97 |
| BsnI | GGCC | 3 cut(s) | 100, 124, 451 |
| Bsp1286I | GDGCHC | 3 cut(s) | 234, 256, 616 |
| Bsp143I | GATC | 3 cut(s) | 113, 504, 651 |
| Bsp68I | TCGCGA | 1 cut(s) | 55 |
| BspACI | CCGC | 9 cut(s) | 63, 79, 101, 125, 127, 240, 275, 515, 740 |
| BspANI | GGCC | 3 cut(s) | 100, 124, 451 |
| BspCNI | CTCAG | 2 cut(s) | 107, 324 |
| BspDI | ATCGAT | 1 cut(s) | 726 |
| BspFNI | CGCG | 6 cut(s) | 55, 103, 127, 175, 177, 264 |
| BspLI | GGNNCC | 2 cut(s) | 144, 513 |
| BspMAI | CTGCAG | 1 cut(s) | 214 |
| BspMI | ACCTGC | 1 cut(s) | 185 |
| BspPI | GGATC | 2 cut(s) | 108, 512 |
| BspT107I | GGYRCC | 2 cut(s) | 142, 511 |
| BspTI | CTTAAG | 2 cut(s) | 617, 700 |
| BsrDI | GCAATG | 3 cut(s) | 147, 315, 879 |
| BsrI | ACTGG | 1 cut(s) | 874 |
| BssECI | CCNNGG | 2 cut(s) | 125, 777 |
| BssHII | GCGCGC | 2 cut(s) | 173, 175 |
| BssMI | GATC | 3 cut(s) | 113, 504, 651 |
| Bst2UI | CCWGG | 2 cut(s) | 448, 778 |
| Bst4CI | ACNGT | 2 cut(s) | 345, 587 |
| Bst6I | CTCTTC | 1 cut(s) | 82 |
| BstAFI | CTTAAG | 2 cut(s) | 617, 700 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 149, 224 |
| BstDEI | CTNAG | 4 cut(s) | 94, 110, 332, 519 |
| BstDSI | CCRYGG | 1 cut(s) | 125 |
| BstF5I | GGATG | 1 cut(s) | 787 |
| BstFNI | CGCG | 6 cut(s) | 55, 103, 127, 175, 177, 264 |
| BstH2I | RGCGCY | 2 cut(s) | 168, 545 |
| BstHHI | GCGC | 8 cut(s) | 167, 175, 177, 179, 194, 264, 430, 544 |
| BstKTI | GATC | 3 cut(s) | 116, 507, 654 |
| BstMAI | GTCTC | 1 cut(s) | 97 |
| BstMBI | GATC | 3 cut(s) | 113, 504, 651 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 130, 149, 181, 215, 218, 224, 233, 427, 809 |
| BstNI | CCWGG | 2 cut(s) | 448, 778 |
| BstNSI | RCATGY | 1 cut(s) | 604 |
| BstSCI | CCNGG | 2 cut(s) | 446, 776 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstSLI | GKGCMC | 1 cut(s) | 234 |
| BstUI | CGCG | 6 cut(s) | 55, 103, 127, 175, 177, 264 |
| BstV1I | GCAGC | 9 cut(s) | 196, 230, 259, 259, 412, 584, 787, 790, 849 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| Bsu15I | ATCGAT | 1 cut(s) | 726 |
| Bsu36I | CCTNAGG | 1 cut(s) | 519 |
| BsuI | GTATCC | 1 cut(s) | 335 |
| BsuRI | GGCC | 3 cut(s) | 100, 124, 451 |
| BsuTUI | ATCGAT | 1 cut(s) | 726 |
| BtgI | CCRYGG | 1 cut(s) | 125 |
| BtsCI | GGATG | 1 cut(s) | 787 |
| BtsIMutI | CAGTG | 1 cut(s) | 329 |
| BtuMI | TCGCGA | 1 cut(s) | 55 |
| BveI | ACCTGC | 1 cut(s) | 185 |
| CfoI | GCGC | 8 cut(s) | 167, 175, 177, 179, 194, 264, 430, 544 |
| Cfr13I | GGNCC | 2 cut(s) | 98, 643 |
| Cfr42I | CCGCGG | 1 cut(s) | 128 |
| ClaI | ATCGAT | 1 cut(s) | 726 |
| Csp6I | GTAC | 3 cut(s) | 459, 512, 867 |
| CviAII | CATG | 5 cut(s) | 153, 380, 410, 601, 609 |
| CviQI | GTAC | 3 cut(s) | 459, 512, 867 |
| DdeI | CTNAG | 4 cut(s) | 94, 110, 332, 519 |
| DpnI | GATC | 3 cut(s) | 115, 506, 653 |
| DpnII | GATC | 3 cut(s) | 113, 504, 651 |
| DraIII | CACNNNGTG | 1 cut(s) | 335 |
| EaeI | YGGCCR | 1 cut(s) | 449 |
| Eam1104I | CTCTTC | 1 cut(s) | 82 |
| EarI | CTCTTC | 1 cut(s) | 82 |
| Eco24I | GRGCYC | 1 cut(s) | 616 |
| Eco47I | GGWCC | 1 cut(s) | 643 |
| Eco47III | AGCGCT | 1 cut(s) | 166 |
| Eco81I | CCTNAGG | 1 cut(s) | 519 |
| EcoRII | CCWGG | 2 cut(s) | 446, 776 |
| EcoT38I | GRGCYC | 1 cut(s) | 616 |
| FaeI | CATG | 5 cut(s) | 156, 383, 413, 604, 612 |
| FatI | CATG | 5 cut(s) | 152, 379, 409, 600, 608 |
| FauI | CCCGC | 3 cut(s) | 120, 233, 268 |
| FbaI | TGATCA | 1 cut(s) | 651 |
| FokI | GGATG | 1 cut(s) | 794 |
| FriOI | GRGCYC | 1 cut(s) | 616 |
| FspBI | CTAG | 2 cut(s) | 567, 809 |
| FspI | TGCGCA | 1 cut(s) | 429 |
| GlaI | GCGC | 8 cut(s) | 166, 174, 176, 178, 193, 263, 429, 543 |
| GsaI | CCCAGC | 1 cut(s) | 183 |
| GsuI | CTGGAG | 2 cut(s) | 520, 547 |
| HaeII | RGCGCY | 2 cut(s) | 168, 545 |
| HaeIII | GGCC | 3 cut(s) | 100, 124, 451 |
| HhaI | GCGC | 8 cut(s) | 167, 175, 177, 179, 194, 264, 430, 544 |
| Hin1II | CATG | 5 cut(s) | 156, 383, 413, 604, 612 |
| Hin6I | GCGC | 8 cut(s) | 165, 173, 175, 177, 192, 262, 428, 542 |
| HinP1I | GCGC | 8 cut(s) | 165, 173, 175, 177, 192, 262, 428, 542 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HindIII | AAGCTT | 1 cut(s) | 481 |
| HinfI | GANTC | 2 cut(s) | 82, 90 |
| HpaI | GTTAAC | 1 cut(s) | 310 |
| HphI | GGTGA | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 1 cut(s) | 310 |
| Hpy188I | TCNGA | 1 cut(s) | 651 |
| Hpy188III | TCNNGA | 5 cut(s) | 54, 487, 499, 526, 625 |
| Hpy8I | GTNNAC | 1 cut(s) | 310 |
| HpyAV | CCTTC | 1 cut(s) | 569 |
| HpyCH4III | ACNGT | 2 cut(s) | 345, 587 |
| HpyCH4V | TGCA | 5 cut(s) | 20, 152, 212, 227, 672 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 130, 149, 181, 215, 218, 224, 233, 427, 809 |
| HpyF3I | CTNAG | 4 cut(s) | 94, 110, 332, 519 |
| Hsp92II | CATG | 5 cut(s) | 156, 383, 413, 604, 612 |
| HspAI | GCGC | 8 cut(s) | 165, 173, 175, 177, 192, 262, 428, 542 |
| KpnI | GGTACC | 1 cut(s) | 515 |
| Ksp22I | TGATCA | 1 cut(s) | 651 |
| KspAI | GTTAAC | 1 cut(s) | 310 |
| KspI | CCGCGG | 1 cut(s) | 128 |
| Kzo9I | GATC | 3 cut(s) | 113, 504, 651 |
| LmnI | GCTCC | 7 cut(s) | 130, 244, 269, 286, 528, 627, 859 |
| Lsp1109I | GCAGC | 9 cut(s) | 196, 230, 259, 259, 412, 584, 787, 790, 849 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 2 cut(s) | 567, 809 |
| MaeIII | GTNAC | 1 cut(s) | 581 |
| MalI | GATC | 3 cut(s) | 115, 506, 653 |
| MboI | GATC | 3 cut(s) | 113, 504, 651 |
| MboII | GAAGA | 1 cut(s) | 99 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 3 cut(s) | 234, 256, 616 |
| MlsI | TGGCCA | 1 cut(s) | 451 |
| MluCI | AATT | 2 cut(s) | 793, 832 |
| MluNI | TGGCCA | 1 cut(s) | 451 |
| MlyI | GAGTC | 1 cut(s) | 99 |
| Mox20I | TGGCCA | 1 cut(s) | 451 |
| MscI | TGGCCA | 1 cut(s) | 451 |
| MseI | TTAA | 5 cut(s) | 309, 618, 684, 701, 714 |
| MslI | CAYNNNNRTG | 2 cut(s) | 157, 599 |
| Msp20I | TGGCCA | 1 cut(s) | 451 |
| MspA1I | CMGCKG | 1 cut(s) | 127 |
| MspCI | CTTAAG | 2 cut(s) | 617, 700 |
| MspR9I | CCNGG | 2 cut(s) | 448, 778 |
| MvaI | CCWGG | 2 cut(s) | 448, 778 |
| MvnI | CGCG | 6 cut(s) | 55, 103, 127, 175, 177, 264 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 130, 149, 181, 215, 218, 224, 233, 427, 809 |
| NdeII | GATC | 3 cut(s) | 113, 504, 651 |
| NlaIII | CATG | 5 cut(s) | 156, 383, 413, 604, 612 |
| NlaIV | GGNNCC | 2 cut(s) | 144, 513 |
| NmuCI | GTSAC | 1 cut(s) | 581 |
| NruI | TCGCGA | 1 cut(s) | 55 |
| NsbI | TGCGCA | 1 cut(s) | 429 |
| NspI | RCATGY | 1 cut(s) | 604 |
| PaqCI | CACCTGC | 1 cut(s) | 185 |
| PauI | GCGCGC | 2 cut(s) | 173, 175 |
| PciI | ACATGT | 1 cut(s) | 600 |
| PfeI | GAWTC | 1 cut(s) | 82 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 153 |
| PleI | GAGTC | 1 cut(s) | 98 |
| PpsI | GAGTC | 1 cut(s) | 98 |
| PscI | ACATGT | 1 cut(s) | 600 |
| Psp6I | CCWGG | 2 cut(s) | 446, 776 |
| PspFI | CCCAGC | 1 cut(s) | 179 |
| PspGI | CCWGG | 2 cut(s) | 446, 776 |
| PspN4I | GGNNCC | 2 cut(s) | 144, 513 |
| PspPI | GGNCC | 2 cut(s) | 98, 643 |
| PstI | CTGCAG | 1 cut(s) | 214 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| PteI | GCGCGC | 2 cut(s) | 173, 175 |
| RruI | TCGCGA | 1 cut(s) | 55 |
| RsaI | GTAC | 3 cut(s) | 460, 513, 868 |
| RsaNI | GTAC | 3 cut(s) | 459, 512, 867 |
| RseI | CAYNNNNRTG | 2 cut(s) | 157, 599 |
| SacII | CCGCGG | 1 cut(s) | 128 |
| SaqAI | TTAA | 5 cut(s) | 309, 618, 684, 701, 714 |
| Sau3AI | GATC | 3 cut(s) | 113, 504, 651 |
| Sau96I | GGNCC | 2 cut(s) | 98, 643 |
| SchI | GAGTC | 1 cut(s) | 99 |
| ScrFI | CCNGG | 2 cut(s) | 448, 778 |
| SduI | GDGCHC | 3 cut(s) | 234, 256, 616 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| Sfr303I | CCGCGG | 1 cut(s) | 128 |
| SgrBI | CCGCGG | 1 cut(s) | 128 |
| SinI | GGWCC | 1 cut(s) | 643 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 157, 599 |
| SmlI | CTYRAG | 3 cut(s) | 617, 677, 700 |
| SmoI | CTYRAG | 3 cut(s) | 617, 677, 700 |
| Sse9I | AATT | 2 cut(s) | 793, 832 |
| SsiI | CCGC | 9 cut(s) | 63, 79, 101, 125, 127, 240, 275, 515, 740 |
| SspMI | CTAG | 2 cut(s) | 567, 809 |
| StyD4I | CCNGG | 2 cut(s) | 446, 776 |
| TaaI | ACNGT | 2 cut(s) | 345, 587 |
| TaqI | TCGA | 4 cut(s) | 85, 478, 726, 766 |
| TaqII | GACCGA | 1 cut(s) | 427 |
| TasI | AATT | 2 cut(s) | 793, 832 |
| TauI | GCSGC | 2 cut(s) | 103, 127 |
| TfiI | GAWTC | 1 cut(s) | 82 |
| Tru1I | TTAA | 5 cut(s) | 309, 618, 684, 701, 714 |
| Tru9I | TTAA | 5 cut(s) | 309, 618, 684, 701, 714 |
| TscAI | CASTG | 1 cut(s) | 336 |
| TseFI | GTSAC | 1 cut(s) | 581 |
| TseI | GCWGC | 9 cut(s) | 209, 218, 247, 272, 425, 572, 800, 803, 862 |
| Tsp45I | GTSAC | 1 cut(s) | 581 |
| TspGWI | ACGGA | 2 cut(s) | 86, 106 |
| TspRI | CASTG | 1 cut(s) | 336 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 153 |
| Vha464I | CTTAAG | 2 cut(s) | 617, 700 |
| VpaK11BI | GGWCC | 1 cut(s) | 643 |
| XapI | RAATTY | 1 cut(s) | 832 |
| XceI | RCATGY | 1 cut(s) | 604 |
| XspI | CTAG | 2 cut(s) | 567, 809 |