ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 880 |
| Acc36I | ACCTGC | 2 cut(s) | 355, 880 |
| AccB1I | GGYRCC | 1 cut(s) | 809 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 181 |
| AccBSI | CCGCTC | 1 cut(s) | 555 |
| AccII | CGCG | 2 cut(s) | 362, 609 |
| AccIII | TCCGGA | 1 cut(s) | 775 |
| AciI | CCGC | 5 cut(s) | 77, 555, 607, 694, 697 |
| AclWI | GGATC | 2 cut(s) | 397, 752 |
| AcsI | RAATTY | 1 cut(s) | 645 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 181, 412, 438, 536, 674, 693, 926 |
| AgsI | TTSAA | 2 cut(s) | 396, 772 |
| AjnI | CCWGG | 2 cut(s) | 529, 673 |
| AleI | CACNNNNGTG | 1 cut(s) | 941 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 773, 805 |
| AluBI | AGCT | 6 cut(s) | 65, 101, 236, 255, 410, 447 |
| AluI | AGCT | 6 cut(s) | 65, 101, 236, 255, 410, 447 |
| Alw21I | GWGCWC | 1 cut(s) | 739 |
| Alw26I | GTCTC | 1 cut(s) | 824 |
| Alw44I | GTGCAC | 1 cut(s) | 735 |
| AlwI | GGATC | 2 cut(s) | 397, 752 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 968 |
| Aor13HI | TCCGGA | 1 cut(s) | 775 |
| AoxI | GGCC | 3 cut(s) | 344, 595, 857 |
| ApaLI | GTGCAC | 1 cut(s) | 735 |
| ApeKI | GCWGC | 4 cut(s) | 469, 472, 576, 621 |
| ApoI | RAATTY | 1 cut(s) | 645 |
| AspLEI | GCGC | 1 cut(s) | 364 |
| AsuHPI | GGTGA | 2 cut(s) | 212, 727 |
| BaeGI | GKGCMC | 2 cut(s) | 739, 814 |
| BanI | GGYRCC | 1 cut(s) | 809 |
| BbsI | GAAGAC | 1 cut(s) | 833 |
| Bbv12I | GWGCWC | 1 cut(s) | 739 |
| BbvCI | CCTCAGC | 1 cut(s) | 411 |
| BbvI | GCAGC | 4 cut(s) | 456, 484, 588, 608 |
| BccI | CCATC | 3 cut(s) | 175, 321, 797 |
| BceAI | ACGGC | 1 cut(s) | 576 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 565, 599 |
| BciT130I | CCWGG | 2 cut(s) | 531, 675 |
| BcoDI | GTCTC | 1 cut(s) | 824 |
| BfaI | CTAG | 3 cut(s) | 150, 314, 921 |
| BfmI | CTRYAG | 2 cut(s) | 340, 470 |
| BfuAI | ACCTGC | 2 cut(s) | 355, 880 |
| BisI | GCNGC | 6 cut(s) | 470, 473, 556, 577, 622, 695 |
| BlpI | GCTNAGC | 1 cut(s) | 551 |
| BlsI | GCNGC | 6 cut(s) | 471, 474, 557, 578, 623, 696 |
| Bme1390I | CCNGG | 2 cut(s) | 531, 675 |
| BmiI | GGNNCC | 2 cut(s) | 811, 918 |
| BmrFI | CCNGG | 2 cut(s) | 531, 675 |
| BmrI | ACTGGG | 1 cut(s) | 794 |
| BmsI | GCATC | 1 cut(s) | 324 |
| BmuI | ACTGGG | 1 cut(s) | 794 |
| BpiI | GAAGAC | 1 cut(s) | 833 |
| Bpu10I | CCTNAGC | 1 cut(s) | 411 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 551 |
| BpuEI | CTTGAG | 1 cut(s) | 806 |
| BsaI | GGTCTC | 1 cut(s) | 824 |
| BsaJI | CCNNGG | 8 cut(s) | 529, 530, 545, 571, 592, 814, 860, 912 |
| BsaWI | WCCGGW | 1 cut(s) | 775 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 77, 107 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 181, 412, 438, 536, 674, 693, 926 |
| Bse1I | ACTGG | 2 cut(s) | 233, 789 |
| Bse3DI | GCAATG | 1 cut(s) | 169 |
| BseAI | TCCGGA | 1 cut(s) | 775 |
| BseBI | CCWGG | 2 cut(s) | 531, 675 |
| BseDI | CCNNGG | 8 cut(s) | 529, 530, 545, 571, 592, 814, 860, 912 |
| BseGI | GGATG | 3 cut(s) | 332, 339, 529 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 181, 412, 438, 536, 674, 693, 926 |
| BseMI | GCAATG | 1 cut(s) | 169 |
| BseMII | CTCAG | 2 cut(s) | 402, 542 |
| BseNI | ACTGG | 2 cut(s) | 233, 789 |
| BseRI | GAGGAG | 4 cut(s) | 26, 457, 722, 725 |
| BseSI | GKGCMC | 2 cut(s) | 739, 814 |
| BseXI | GCAGC | 4 cut(s) | 456, 484, 588, 608 |
| Bsh1236I | CGCG | 2 cut(s) | 362, 609 |
| BshFI | GGCC | 3 cut(s) | 346, 597, 859 |
| BshNI | GGYRCC | 1 cut(s) | 809 |
| BsiHKAI | GWGCWC | 1 cut(s) | 739 |
| BsiSI | CCGG | 3 cut(s) | 659, 687, 776 |
| BslFI | GGGAC | 2 cut(s) | 57, 224 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 181, 412, 438, 536, 674, 693, 926 |
| BsmAI | GTCTC | 1 cut(s) | 824 |
| BsmFI | GGGAC | 2 cut(s) | 57, 224 |
| BsnI | GGCC | 3 cut(s) | 346, 597, 859 |
| Bso31I | GGTCTC | 1 cut(s) | 824 |
| Bsp1286I | GDGCHC | 2 cut(s) | 739, 814 |
| Bsp13I | TCCGGA | 1 cut(s) | 775 |
| Bsp143I | GATC | 4 cut(s) | 402, 586, 757, 933 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 551 |
| Bsp19I | CCATGG | 3 cut(s) | 571, 592, 912 |
| BspACI | CCGC | 5 cut(s) | 77, 555, 607, 694, 697 |
| BspANI | GGCC | 3 cut(s) | 346, 597, 859 |
| BspCNI | CTCAG | 2 cut(s) | 403, 543 |
| BspEI | TCCGGA | 1 cut(s) | 775 |
| BspFNI | CGCG | 2 cut(s) | 362, 609 |
| BspLI | GGNNCC | 2 cut(s) | 811, 918 |
| BspMAI | CTGCAG | 1 cut(s) | 474 |
| BspMI | ACCTGC | 2 cut(s) | 355, 880 |
| BspPI | GGATC | 2 cut(s) | 397, 752 |
| BspT107I | GGYRCC | 1 cut(s) | 809 |
| BspTNI | GGTCTC | 1 cut(s) | 824 |
| BsrBI | CCGCTC | 1 cut(s) | 555 |
| BsrDI | GCAATG | 1 cut(s) | 169 |
| BsrI | ACTGG | 2 cut(s) | 233, 789 |
| BssECI | CCNNGG | 8 cut(s) | 529, 530, 545, 571, 592, 814, 860, 912 |
| BssMI | GATC | 4 cut(s) | 402, 586, 757, 933 |
| BssT1I | CCWWGG | 5 cut(s) | 545, 571, 592, 814, 912 |
| Bst2UI | CCWGG | 2 cut(s) | 531, 675 |
| Bst4CI | ACNGT | 2 cut(s) | 249, 614 |
| Bst6I | CTCTTC | 1 cut(s) | 626 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 481 |
| BstC8I | GCNNGC | 1 cut(s) | 360 |
| BstDEI | CTNAG | 2 cut(s) | 411, 551 |
| BstDSI | CCRYGG | 3 cut(s) | 571, 592, 912 |
| BstEII | GGTNACC | 1 cut(s) | 715 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 534, 672 |
| BstF5I | GGATG | 3 cut(s) | 332, 339, 529 |
| BstFNI | CGCG | 2 cut(s) | 362, 609 |
| BstHHI | GCGC | 1 cut(s) | 364 |
| BstKTI | GATC | 4 cut(s) | 405, 589, 760, 936 |
| BstMAI | GTCTC | 1 cut(s) | 824 |
| BstMBI | GATC | 4 cut(s) | 402, 586, 757, 933 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 314, 343, 481 |
| BstNI | CCWGG | 2 cut(s) | 531, 675 |
| BstNSI | RCATGY | 1 cut(s) | 296 |
| BstPI | GGTNACC | 1 cut(s) | 715 |
| BstSCI | CCNGG | 2 cut(s) | 529, 673 |
| BstSFI | CTRYAG | 2 cut(s) | 340, 470 |
| BstSLI | GKGCMC | 2 cut(s) | 739, 814 |
| BstUI | CGCG | 2 cut(s) | 362, 609 |
| BstV1I | GCAGC | 4 cut(s) | 456, 484, 588, 608 |
| BstV2I | GAAGAC | 1 cut(s) | 833 |
| BsuRI | GGCC | 3 cut(s) | 346, 597, 859 |
| BtgI | CCRYGG | 3 cut(s) | 571, 592, 912 |
| BtsCI | GGATG | 3 cut(s) | 332, 339, 529 |
| BtsI | GCAGTG | 1 cut(s) | 936 |
| BtsIMutI | CAGTG | 2 cut(s) | 226, 936 |
| BveI | ACCTGC | 2 cut(s) | 355, 880 |
| Cac8I | GCNNGC | 1 cut(s) | 360 |
| CaiI | CAGNNNCTG | 1 cut(s) | 968 |
| CfoI | GCGC | 1 cut(s) | 364 |
| CseI | GACGC | 2 cut(s) | 568, 613 |
| CviAII | CATG | 6 cut(s) | 186, 293, 572, 593, 913, 925 |
| DdeI | CTNAG | 2 cut(s) | 411, 551 |
| DpnI | GATC | 4 cut(s) | 404, 588, 759, 935 |
| DpnII | GATC | 4 cut(s) | 402, 586, 757, 933 |
| Eam1104I | CTCTTC | 1 cut(s) | 626 |
| EarI | CTCTTC | 1 cut(s) | 626 |
| EciI | GGCGGA | 1 cut(s) | 712 |
| Eco130I | CCWWGG | 5 cut(s) | 545, 571, 592, 814, 912 |
| Eco147I | AGGCCT | 1 cut(s) | 346 |
| Eco31I | GGTCTC | 1 cut(s) | 824 |
| Eco91I | GGTNACC | 1 cut(s) | 715 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 534, 672 |
| EcoO65I | GGTNACC | 1 cut(s) | 715 |
| EcoRII | CCWGG | 2 cut(s) | 529, 673 |
| EcoT14I | CCWWGG | 5 cut(s) | 545, 571, 592, 814, 912 |
| EcoT22I | ATGCAT | 1 cut(s) | 294 |
| ErhI | CCWWGG | 5 cut(s) | 545, 571, 592, 814, 912 |
| FaeI | CATG | 6 cut(s) | 189, 296, 575, 596, 916, 928 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 869, 901 |
| FaqI | GGGAC | 2 cut(s) | 57, 224 |
| FatI | CATG | 6 cut(s) | 185, 292, 571, 592, 912, 924 |
| FauI | CCCGC | 1 cut(s) | 70 |
| Fnu4HI | GCNGC | 6 cut(s) | 470, 473, 556, 577, 622, 695 |
| FokI | GGATG | 3 cut(s) | 339, 346, 536 |
| Fsp4HI | GCNGC | 6 cut(s) | 470, 473, 556, 577, 622, 695 |
| FspBI | CTAG | 3 cut(s) | 150, 314, 921 |
| GlaI | GCGC | 1 cut(s) | 363 |
| GluI | GCNGC | 6 cut(s) | 470, 473, 556, 577, 622, 695 |
| HaeIII | GGCC | 3 cut(s) | 346, 597, 859 |
| HapII | CCGG | 3 cut(s) | 659, 687, 776 |
| HgaI | GACGC | 2 cut(s) | 568, 613 |
| HhaI | GCGC | 1 cut(s) | 364 |
| Hin1II | CATG | 6 cut(s) | 189, 296, 575, 596, 916, 928 |
| Hin6I | GCGC | 1 cut(s) | 362 |
| HinP1I | GCGC | 1 cut(s) | 362 |
| HinfI | GANTC | 5 cut(s) | 426, 486, 772, 908, 959 |
| HpaII | CCGG | 3 cut(s) | 659, 687, 776 |
| HphI | GGTGA | 2 cut(s) | 212, 727 |
| Hpy166II | GTNNAC | 2 cut(s) | 737, 946 |
| Hpy188I | TCNGA | 3 cut(s) | 402, 907, 964 |
| Hpy188III | TCNNGA | 4 cut(s) | 628, 650, 776, 823 |
| Hpy8I | GTNNAC | 2 cut(s) | 737, 946 |
| Hpy99I | CGWCG | 1 cut(s) | 629 |
| HpyAV | CCTTC | 3 cut(s) | 34, 678, 849 |
| HpyCH4III | ACNGT | 2 cut(s) | 249, 614 |
| HpyCH4IV | ACGT | 1 cut(s) | 126 |
| HpyCH4V | TGCA | 7 cut(s) | 162, 172, 292, 472, 643, 737, 889 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 314, 343, 481 |
| HpyF3I | CTNAG | 2 cut(s) | 411, 551 |
| HpySE526I | ACGT | 1 cut(s) | 126 |
| Hsp92II | CATG | 6 cut(s) | 189, 296, 575, 596, 916, 928 |
| HspAI | GCGC | 1 cut(s) | 362 |
| Kpn2I | TCCGGA | 1 cut(s) | 775 |
| Kzo9I | GATC | 4 cut(s) | 402, 586, 757, 933 |
| LmnI | GCTCC | 3 cut(s) | 13, 444, 699 |
| Lsp1109I | GCAGC | 4 cut(s) | 456, 484, 588, 608 |
| LweI | GCATC | 1 cut(s) | 324 |
| MaeI | CTAG | 3 cut(s) | 150, 314, 921 |
| MaeII | ACGT | 1 cut(s) | 126 |
| MaeIII | GTNAC | 1 cut(s) | 715 |
| MalI | GATC | 4 cut(s) | 404, 588, 759, 935 |
| MbiI | CCGCTC | 1 cut(s) | 555 |
| MboI | GATC | 4 cut(s) | 402, 586, 757, 933 |
| MboII | GAAGA | 4 cut(s) | 232, 643, 838, 892 |
| MhlI | GDGCHC | 2 cut(s) | 739, 814 |
| MluCI | AATT | 2 cut(s) | 464, 645 |
| MlyI | GAGTC | 1 cut(s) | 902 |
| MmeI | TCCRAC | 1 cut(s) | 706 |
| Mph1103I | ATGCAT | 1 cut(s) | 294 |
| MroI | TCCGGA | 1 cut(s) | 775 |
| MseI | TTAA | 5 cut(s) | 59, 95, 300, 371, 449 |
| MslI | CAYNNNNRTG | 2 cut(s) | 570, 941 |
| MspI | CCGG | 3 cut(s) | 659, 687, 776 |
| MspR9I | CCNGG | 2 cut(s) | 531, 675 |
| MvaI | CCWGG | 2 cut(s) | 531, 675 |
| MvnI | CGCG | 2 cut(s) | 362, 609 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 314, 343, 481 |
| NcoI | CCATGG | 3 cut(s) | 571, 592, 912 |
| NdeII | GATC | 4 cut(s) | 402, 586, 757, 933 |
| NlaIII | CATG | 6 cut(s) | 189, 296, 575, 596, 916, 928 |
| NlaIV | GGNNCC | 2 cut(s) | 811, 918 |
| NmeAIII | GCCGAG | 1 cut(s) | 885 |
| NmuCI | GTSAC | 1 cut(s) | 715 |
| NsiI | ATGCAT | 1 cut(s) | 294 |
| NspI | RCATGY | 1 cut(s) | 296 |
| OliI | CACNNNNGTG | 1 cut(s) | 941 |
| PaqCI | CACCTGC | 1 cut(s) | 880 |
| PasI | CCCWGGG | 1 cut(s) | 530 |
| PceI | AGGCCT | 1 cut(s) | 346 |
| PfeI | GAWTC | 4 cut(s) | 426, 486, 772, 959 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 181 |
| PkrI | GCNGC | 6 cut(s) | 471, 474, 557, 578, 623, 696 |
| PleI | GAGTC | 1 cut(s) | 902 |
| PpsI | GAGTC | 1 cut(s) | 902 |
| Psp6I | CCWGG | 2 cut(s) | 529, 673 |
| PspEI | GGTNACC | 1 cut(s) | 715 |
| PspGI | CCWGG | 2 cut(s) | 529, 673 |
| PspN4I | GGNNCC | 2 cut(s) | 811, 918 |
| PstI | CTGCAG | 1 cut(s) | 474 |
| PstNI | CAGNNNCTG | 1 cut(s) | 968 |
| RseI | CAYNNNNRTG | 2 cut(s) | 570, 941 |
| SaqAI | TTAA | 5 cut(s) | 59, 95, 300, 371, 449 |
| SatI | GCNGC | 6 cut(s) | 470, 473, 556, 577, 622, 695 |
| Sau3AI | GATC | 4 cut(s) | 402, 586, 757, 933 |
| SchI | GAGTC | 1 cut(s) | 902 |
| ScrFI | CCNGG | 2 cut(s) | 531, 675 |
| SduI | GDGCHC | 2 cut(s) | 739, 814 |
| SfaNI | GCATC | 1 cut(s) | 324 |
| SfcI | CTRYAG | 2 cut(s) | 340, 470 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 570, 941 |
| SmlI | CTYRAG | 1 cut(s) | 821 |
| SmoI | CTYRAG | 1 cut(s) | 821 |
| Sse9I | AATT | 2 cut(s) | 464, 645 |
| SseBI | AGGCCT | 1 cut(s) | 346 |
| SsiI | CCGC | 5 cut(s) | 77, 555, 607, 694, 697 |
| SspI | AATATT | 1 cut(s) | 511 |
| SspMI | CTAG | 3 cut(s) | 150, 314, 921 |
| StuI | AGGCCT | 1 cut(s) | 346 |
| StyD4I | CCNGG | 2 cut(s) | 529, 673 |
| StyI | CCWWGG | 5 cut(s) | 545, 571, 592, 814, 912 |
| TaaI | ACNGT | 2 cut(s) | 249, 614 |
| TaiI | ACGT | 1 cut(s) | 129 |
| TaqI | TCGA | 4 cut(s) | 141, 585, 627, 957 |
| TasI | AATT | 2 cut(s) | 464, 645 |
| TauI | GCSGC | 2 cut(s) | 558, 697 |
| TfiI | GAWTC | 4 cut(s) | 426, 486, 772, 959 |
| Tru1I | TTAA | 5 cut(s) | 59, 95, 300, 371, 449 |
| Tru9I | TTAA | 5 cut(s) | 59, 95, 300, 371, 449 |
| TscAI | CASTG | 2 cut(s) | 233, 943 |
| TseFI | GTSAC | 1 cut(s) | 715 |
| TseI | GCWGC | 4 cut(s) | 469, 472, 576, 621 |
| Tsp45I | GTSAC | 1 cut(s) | 715 |
| TspDTI | ATGAA | 3 cut(s) | 180, 392, 503 |
| TspRI | CASTG | 2 cut(s) | 233, 943 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 181 |
| VneI | GTGCAC | 1 cut(s) | 735 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 534, 672 |
| XapI | RAATTY | 1 cut(s) | 645 |
| XceI | RCATGY | 1 cut(s) | 296 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 497 |
| XspI | CTAG | 3 cut(s) | 150, 314, 921 |
| Zsp2I | ATGCAT | 1 cut(s) | 294 |