ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 269 - 323 | 7.2e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 757 |
| AclWI | GGATC | 7 cut(s) | 175, 341, 619, 632, 665, 678, 841 |
| AcsI | RAATTY | 2 cut(s) | 238, 913 |
| AcuI | CTGAAG | 2 cut(s) | 432, 621 |
| AdeI | CACNNNGTG | 1 cut(s) | 29 |
| AfaI | GTAC | 2 cut(s) | 368, 716 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 386, 788 |
| AgsI | TTSAA | 2 cut(s) | 912, 958 |
| AluBI | AGCT | 7 cut(s) | 103, 286, 412, 620, 725, 818, 845 |
| AluI | AGCT | 7 cut(s) | 103, 286, 412, 620, 725, 818, 845 |
| Alw21I | GWGCWC | 2 cut(s) | 657, 727 |
| Alw26I | GTCTC | 2 cut(s) | 674, 739 |
| Alw44I | GTGCAC | 1 cut(s) | 653 |
| AlwI | GGATC | 7 cut(s) | 175, 341, 619, 632, 665, 678, 841 |
| AoxI | GGCC | 3 cut(s) | 377, 439, 927 |
| ApaLI | GTGCAC | 1 cut(s) | 653 |
| ApeKI | GCWGC | 3 cut(s) | 32, 103, 502 |
| ApoI | RAATTY | 2 cut(s) | 238, 913 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 500, 532 |
| AspA2I | CCTAGG | 1 cut(s) | 674 |
| AspS9I | GGNCC | 2 cut(s) | 64, 440 |
| AsuHPI | GGTGA | 2 cut(s) | 170, 697 |
| AsuII | TTCGAA | 1 cut(s) | 215 |
| AvaII | GGWCC | 1 cut(s) | 64 |
| AvrII | CCTAGG | 1 cut(s) | 674 |
| BaeGI | GKGCMC | 1 cut(s) | 657 |
| BamHI | GGATCC | 2 cut(s) | 624, 670 |
| BanII | GRGCYC | 1 cut(s) | 727 |
| BbsI | GAAGAC | 1 cut(s) | 614 |
| Bbv12I | GWGCWC | 2 cut(s) | 657, 727 |
| BbvCI | CCTCAGC | 2 cut(s) | 413, 419 |
| BbvI | GCAGC | 3 cut(s) | 19, 90, 489 |
| BccI | CCATC | 2 cut(s) | 388, 684 |
| BciVI | GTATCC | 1 cut(s) | 348 |
| BclI | TGATCA | 1 cut(s) | 51 |
| BcoDI | GTCTC | 2 cut(s) | 674, 739 |
| BfaI | CTAG | 3 cut(s) | 360, 675, 786 |
| BfmI | CTRYAG | 1 cut(s) | 923 |
| BfuI | GTATCC | 1 cut(s) | 348 |
| BisI | GCNGC | 3 cut(s) | 33, 104, 503 |
| BlnI | CCTAGG | 1 cut(s) | 674 |
| BlsI | GCNGC | 3 cut(s) | 34, 105, 504 |
| Bme18I | GGWCC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 2 cut(s) | 64, 440 |
| BmiI | GGNNCC | 4 cut(s) | 229, 442, 626, 672 |
| BmsI | GCATC | 3 cut(s) | 102, 257, 513 |
| BpiI | GAAGAC | 1 cut(s) | 614 |
| BpmI | CTGGAG | 2 cut(s) | 659, 858 |
| Bpu10I | CCTNAGC | 2 cut(s) | 413, 419 |
| Bpu14I | TTCGAA | 1 cut(s) | 215 |
| BsaBI | GATNNNNATC | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 3 cut(s) | 350, 674, 930 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 766, 796 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 386, 788 |
| Bse8I | GATNNNNATC | 1 cut(s) | 50 |
| BseDI | CCNNGG | 3 cut(s) | 350, 674, 930 |
| BseGI | GGATG | 2 cut(s) | 396, 715 |
| BseJI | GATNNNNATC | 1 cut(s) | 50 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 386, 788 |
| BseMII | CTCAG | 4 cut(s) | 156, 404, 410, 575 |
| BseRI | GAGGAG | 2 cut(s) | 236, 277 |
| BseSI | GKGCMC | 1 cut(s) | 657 |
| BseXI | GCAGC | 3 cut(s) | 19, 90, 489 |
| BseYI | CCCAGC | 1 cut(s) | 143 |
| BshFI | GGCC | 3 cut(s) | 379, 441, 929 |
| BsiHKAI | GWGCWC | 2 cut(s) | 657, 727 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 386, 788 |
| BsmAI | GTCTC | 2 cut(s) | 674, 739 |
| BsmBI | CGTCTC | 1 cut(s) | 674 |
| BsnI | GGCC | 3 cut(s) | 379, 441, 929 |
| Bsp119I | TTCGAA | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 2 cut(s) | 657, 727 |
| Bsp143I | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| BspANI | GGCC | 3 cut(s) | 379, 441, 929 |
| BspCNI | CTCAG | 4 cut(s) | 157, 405, 411, 576 |
| BspHI | TCATGA | 1 cut(s) | 48 |
| BspLI | GGNNCC | 4 cut(s) | 229, 442, 626, 672 |
| BspPI | GGATC | 7 cut(s) | 175, 341, 619, 632, 665, 678, 841 |
| BspQI | GCTCTTC | 1 cut(s) | 402 |
| BspT104I | TTCGAA | 1 cut(s) | 215 |
| BssECI | CCNNGG | 3 cut(s) | 350, 674, 930 |
| BssMI | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| BssT1I | CCWWGG | 2 cut(s) | 350, 674 |
| Bst4CI | ACNGT | 5 cut(s) | 204, 366, 542, 613, 685 |
| Bst6I | CTCTTC | 4 cut(s) | 402, 451, 472, 953 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 254 |
| BstBI | TTCGAA | 1 cut(s) | 215 |
| BstC8I | GCNNGC | 2 cut(s) | 723, 943 |
| BstDEI | CTNAG | 5 cut(s) | 26, 165, 413, 419, 584 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 786 |
| BstF5I | GGATG | 2 cut(s) | 396, 715 |
| BstKTI | GATC | 7 cut(s) | 48, 54, 183, 349, 627, 673, 836 |
| BstMAI | GTCTC | 2 cut(s) | 674, 739 |
| BstMBI | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 254 |
| BstNSI | RCATGY | 1 cut(s) | 945 |
| BstSFI | CTRYAG | 1 cut(s) | 923 |
| BstSLI | GKGCMC | 1 cut(s) | 657 |
| BstV1I | GCAGC | 3 cut(s) | 19, 90, 489 |
| BstV2I | GAAGAC | 1 cut(s) | 614 |
| BstX2I | RGATCY | 5 cut(s) | 180, 346, 624, 670, 833 |
| BstYI | RGATCY | 5 cut(s) | 180, 346, 624, 670, 833 |
| BsuI | GTATCC | 1 cut(s) | 348 |
| BsuRI | GGCC | 3 cut(s) | 379, 441, 929 |
| BtsCI | GGATG | 2 cut(s) | 396, 715 |
| BtsIMutI | CAGTG | 1 cut(s) | 900 |
| Cac8I | GCNNGC | 2 cut(s) | 723, 943 |
| CciI | TCATGA | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 2 cut(s) | 64, 440 |
| CseI | GACGC | 1 cut(s) | 876 |
| Csp6I | GTAC | 2 cut(s) | 367, 715 |
| CviAII | CATG | 4 cut(s) | 49, 195, 629, 942 |
| CviQI | GTAC | 2 cut(s) | 367, 715 |
| DdeI | CTNAG | 5 cut(s) | 26, 165, 413, 419, 584 |
| DpnI | GATC | 7 cut(s) | 47, 53, 182, 348, 626, 672, 835 |
| DpnII | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| DraI | TTTAAA | 1 cut(s) | 456 |
| DraIII | CACNNNGTG | 1 cut(s) | 29 |
| Eam1104I | CTCTTC | 4 cut(s) | 402, 451, 472, 953 |
| EarI | CTCTTC | 4 cut(s) | 402, 451, 472, 953 |
| Ecl136II | GAGCTC | 1 cut(s) | 725 |
| Eco130I | CCWWGG | 2 cut(s) | 350, 674 |
| Eco147I | AGGCCT | 1 cut(s) | 379 |
| Eco24I | GRGCYC | 1 cut(s) | 727 |
| Eco47I | GGWCC | 1 cut(s) | 64 |
| Eco53kI | GAGCTC | 1 cut(s) | 725 |
| Eco57I | CTGAAG | 2 cut(s) | 432, 621 |
| EcoICRI | GAGCTC | 1 cut(s) | 725 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 786 |
| EcoO109I | RGGNCCY | 1 cut(s) | 440 |
| EcoT14I | CCWWGG | 2 cut(s) | 350, 674 |
| EcoT38I | GRGCYC | 1 cut(s) | 727 |
| ErhI | CCWWGG | 2 cut(s) | 350, 674 |
| Esp3I | CGTCTC | 1 cut(s) | 674 |
| FaeI | CATG | 4 cut(s) | 52, 198, 632, 945 |
| FatI | CATG | 4 cut(s) | 48, 194, 628, 941 |
| FauNDI | CATATG | 2 cut(s) | 82, 253 |
| FbaI | TGATCA | 1 cut(s) | 51 |
| FblI | GTMKAC | 1 cut(s) | 757 |
| Fnu4HI | GCNGC | 3 cut(s) | 33, 104, 503 |
| FokI | GGATG | 2 cut(s) | 403, 722 |
| FriOI | GRGCYC | 1 cut(s) | 727 |
| Fsp4HI | GCNGC | 3 cut(s) | 33, 104, 503 |
| FspBI | CTAG | 3 cut(s) | 360, 675, 786 |
| GluI | GCNGC | 3 cut(s) | 33, 104, 503 |
| GsaI | CCCAGC | 1 cut(s) | 147 |
| GsuI | CTGGAG | 2 cut(s) | 659, 858 |
| HaeIII | GGCC | 3 cut(s) | 379, 441, 929 |
| HgaI | GACGC | 1 cut(s) | 876 |
| Hin1II | CATG | 4 cut(s) | 52, 198, 632, 945 |
| HindIII | AAGCTT | 1 cut(s) | 618 |
| HinfI | GANTC | 3 cut(s) | 161, 265, 515 |
| HphI | GGTGA | 2 cut(s) | 170, 697 |
| Hpy166II | GTNNAC | 4 cut(s) | 369, 655, 758, 774 |
| Hpy188I | TCNGA | 3 cut(s) | 166, 585, 601 |
| Hpy188III | TCNNGA | 2 cut(s) | 49, 837 |
| Hpy8I | GTNNAC | 4 cut(s) | 369, 655, 758, 774 |
| Hpy99I | CGWCG | 2 cut(s) | 815, 892 |
| HpyAV | CCTTC | 6 cut(s) | 33, 163, 211, 490, 862, 944 |
| HpyCH4III | ACNGT | 5 cut(s) | 204, 366, 542, 613, 685 |
| HpyCH4V | TGCA | 7 cut(s) | 120, 248, 526, 655, 737, 898, 945 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 254 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 165, 413, 419, 584 |
| Hsp92II | CATG | 4 cut(s) | 52, 198, 632, 945 |
| Ksp22I | TGATCA | 1 cut(s) | 51 |
| Kzo9I | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| LguI | GCTCTTC | 1 cut(s) | 402 |
| LmnI | GCTCC | 3 cut(s) | 227, 815, 884 |
| Lsp1109I | GCAGC | 3 cut(s) | 19, 90, 489 |
| LweI | GCATC | 3 cut(s) | 102, 257, 513 |
| MaeI | CTAG | 3 cut(s) | 360, 675, 786 |
| MaeIII | GTNAC | 2 cut(s) | 126, 461 |
| MalI | GATC | 7 cut(s) | 47, 53, 182, 348, 626, 672, 835 |
| MboI | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| MboII | GAAGA | 9 cut(s) | 55, 190, 419, 438, 459, 490, 493, 619, 970 |
| MflI | RGATCY | 5 cut(s) | 180, 346, 624, 670, 833 |
| MhlI | GDGCHC | 2 cut(s) | 657, 727 |
| MluCI | AATT | 3 cut(s) | 238, 907, 913 |
| MlyI | GAGTC | 2 cut(s) | 274, 524 |
| MmeI | TCCRAC | 3 cut(s) | 384, 405, 687 |
| MseI | TTAA | 4 cut(s) | 455, 534, 798, 879 |
| MslI | CAYNNNNRTG | 1 cut(s) | 256 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 254 |
| NdeI | CATATG | 2 cut(s) | 82, 253 |
| NdeII | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| NlaIII | CATG | 4 cut(s) | 52, 198, 632, 945 |
| NlaIV | GGNNCC | 4 cut(s) | 229, 442, 626, 672 |
| NmeAIII | GCCGAG | 1 cut(s) | 955 |
| NspI | RCATGY | 1 cut(s) | 945 |
| NspV | TTCGAA | 1 cut(s) | 215 |
| PaeI | GCATGC | 1 cut(s) | 945 |
| PagI | TCATGA | 1 cut(s) | 48 |
| PceI | AGGCCT | 1 cut(s) | 379 |
| PciSI | GCTCTTC | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PflFI | GACNNNGTC | 1 cut(s) | 514 |
| PkrI | GCNGC | 3 cut(s) | 34, 105, 504 |
| PleI | GAGTC | 2 cut(s) | 273, 523 |
| PpsI | GAGTC | 2 cut(s) | 273, 523 |
| Psp124BI | GAGCTC | 1 cut(s) | 727 |
| PspFI | CCCAGC | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 4 cut(s) | 229, 442, 626, 672 |
| PspPI | GGNCC | 2 cut(s) | 64, 440 |
| PsuI | RGATCY | 5 cut(s) | 180, 346, 624, 670, 833 |
| PsyI | GACNNNGTC | 1 cut(s) | 514 |
| RsaI | GTAC | 2 cut(s) | 368, 716 |
| RsaNI | GTAC | 2 cut(s) | 367, 715 |
| RseI | CAYNNNNRTG | 1 cut(s) | 256 |
| SacI | GAGCTC | 1 cut(s) | 727 |
| SapI | GCTCTTC | 1 cut(s) | 402 |
| SaqAI | TTAA | 4 cut(s) | 455, 534, 798, 879 |
| SatI | GCNGC | 3 cut(s) | 33, 104, 503 |
| Sau3AI | GATC | 7 cut(s) | 45, 51, 180, 346, 624, 670, 833 |
| Sau96I | GGNCC | 2 cut(s) | 64, 440 |
| SchI | GAGTC | 2 cut(s) | 274, 524 |
| SduI | GDGCHC | 2 cut(s) | 657, 727 |
| SfaNI | GCATC | 3 cut(s) | 102, 257, 513 |
| SfcI | CTRYAG | 1 cut(s) | 923 |
| SfuI | TTCGAA | 1 cut(s) | 215 |
| SinI | GGWCC | 1 cut(s) | 64 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 256 |
| SphI | GCATGC | 1 cut(s) | 945 |
| Sse9I | AATT | 3 cut(s) | 238, 907, 913 |
| SseBI | AGGCCT | 1 cut(s) | 379 |
| SspMI | CTAG | 3 cut(s) | 360, 675, 786 |
| SstI | GAGCTC | 1 cut(s) | 727 |
| StuI | AGGCCT | 1 cut(s) | 379 |
| StyI | CCWWGG | 2 cut(s) | 350, 674 |
| TaaI | ACNGT | 5 cut(s) | 204, 366, 542, 613, 685 |
| TaqI | TCGA | 2 cut(s) | 215, 810 |
| TaqII | GACCGA | 1 cut(s) | 527 |
| TasI | AATT | 3 cut(s) | 238, 907, 913 |
| TatI | WGTACW | 1 cut(s) | 714 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| Tru1I | TTAA | 4 cut(s) | 455, 534, 798, 879 |
| Tru9I | TTAA | 4 cut(s) | 455, 534, 798, 879 |
| TscAI | CASTG | 1 cut(s) | 900 |
| TseI | GCWGC | 3 cut(s) | 32, 103, 502 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 828, 846 |
| TspRI | CASTG | 1 cut(s) | 900 |
| Tth111I | GACNNNGTC | 1 cut(s) | 514 |
| VneI | GTGCAC | 1 cut(s) | 653 |
| VpaK11BI | GGWCC | 1 cut(s) | 64 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 786 |
| XapI | RAATTY | 2 cut(s) | 238, 913 |
| XceI | RCATGY | 1 cut(s) | 945 |
| XmaJI | CCTAGG | 1 cut(s) | 674 |
| XmiI | GTMKAC | 1 cut(s) | 757 |
| XspI | CTAG | 3 cut(s) | 360, 675, 786 |