Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 471 |
| AccI | GTMKAC | 3 cut(s) | 187, 313, 348 |
| AcoI | YGGCCR | 1 cut(s) | 321 |
| AcsI | RAATTY | 3 cut(s) | 93, 511, 541 |
| AcuI | CTGAAG | 1 cut(s) | 306 |
| AfaI | GTAC | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 165, 270 |
| AflIII | ACRYGT | 1 cut(s) | 331 |
| AgsI | TTSAA | 5 cut(s) | 11, 100, 460, 511, 547 |
| AluBI | AGCT | 3 cut(s) | 137, 404, 488 |
| AluI | AGCT | 3 cut(s) | 137, 404, 488 |
| Alw21I | GWGCWC | 1 cut(s) | 432 |
| Alw26I | GTCTC | 2 cut(s) | 402, 444 |
| Ama87I | CYCGRG | 1 cut(s) | 405 |
| AoxI | GGCC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 1 cut(s) | 497 |
| ApoI | RAATTY | 3 cut(s) | 93, 511, 541 |
| AspS9I | GGNCC | 1 cut(s) | 562 |
| AsuHPI | GGTGA | 2 cut(s) | 158, 394 |
| AvaI | CYCGRG | 1 cut(s) | 405 |
| AvaII | GGWCC | 1 cut(s) | 562 |
| BaeGI | GKGCMC | 1 cut(s) | 476 |
| BalI | TGGCCA | 1 cut(s) | 323 |
| BanI | GGYRCC | 1 cut(s) | 471 |
| BbsI | GAAGAC | 2 cut(s) | 294, 334 |
| Bbv12I | GWGCWC | 1 cut(s) | 432 |
| BbvI | GCAGC | 1 cut(s) | 509 |
| BccI | CCATC | 4 cut(s) | 163, 221, 533, 578 |
| BcoDI | GTCTC | 2 cut(s) | 402, 444 |
| BfaI | CTAG | 3 cut(s) | 143, 246, 494 |
| BisI | GCNGC | 1 cut(s) | 498 |
| BlsI | GCNGC | 1 cut(s) | 499 |
| Bme18I | GGWCC | 1 cut(s) | 562 |
| BmeT110I | CYCGRG | 1 cut(s) | 405 |
| BmgT120I | GGNCC | 1 cut(s) | 562 |
| BmiI | GGNNCC | 1 cut(s) | 473 |
| BmrI | ACTGGG | 1 cut(s) | 59 |
| BmsI | GCATC | 2 cut(s) | 139, 345 |
| BmuI | ACTGGG | 1 cut(s) | 59 |
| BpiI | GAAGAC | 2 cut(s) | 294, 334 |
| BpmI | CTGGAG | 1 cut(s) | 76 |
| BsaI | GGTCTC | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 1 cut(s) | 445 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 165, 270 |
| Bse1I | ACTGG | 2 cut(s) | 54, 356 |
| Bse3DI | GCAATG | 2 cut(s) | 42, 207 |
| BseDI | CCNNGG | 1 cut(s) | 445 |
| BseGI | GGATG | 5 cut(s) | 122, 155, 360, 440, 525 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 165, 270 |
| BseMI | GCAATG | 2 cut(s) | 42, 207 |
| BseNI | ACTGG | 2 cut(s) | 54, 356 |
| BseSI | GKGCMC | 1 cut(s) | 476 |
| BseXI | GCAGC | 1 cut(s) | 509 |
| BsgI | GTGCAG | 1 cut(s) | 465 |
| BshFI | GGCC | 1 cut(s) | 323 |
| BshNI | GGYRCC | 1 cut(s) | 471 |
| BsiHKAI | GWGCWC | 1 cut(s) | 432 |
| BsiHKCI | CYCGRG | 1 cut(s) | 405 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 165, 270 |
| BsmAI | GTCTC | 2 cut(s) | 402, 444 |
| BsnI | GGCC | 1 cut(s) | 323 |
| Bso31I | GGTCTC | 1 cut(s) | 444 |
| BsoBI | CYCGRG | 1 cut(s) | 405 |
| Bsp1286I | GDGCHC | 2 cut(s) | 432, 476 |
| Bsp143I | GATC | 1 cut(s) | 340 |
| BspANI | GGCC | 1 cut(s) | 323 |
| BspLI | GGNNCC | 1 cut(s) | 473 |
| BspT107I | GGYRCC | 1 cut(s) | 471 |
| BspTNI | GGTCTC | 1 cut(s) | 444 |
| BsrDI | GCAATG | 2 cut(s) | 42, 207 |
| BsrI | ACTGG | 2 cut(s) | 54, 356 |
| BssECI | CCNNGG | 1 cut(s) | 445 |
| BssMI | GATC | 1 cut(s) | 340 |
| BssNAI | GTATAC | 2 cut(s) | 314, 349 |
| BssT1I | CCWWGG | 1 cut(s) | 445 |
| Bst1107I | GTATAC | 2 cut(s) | 314, 349 |
| BstC8I | GCNNGC | 2 cut(s) | 201, 205 |
| BstDEI | CTNAG | 1 cut(s) | 419 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 268 |
| BstF5I | GGATG | 5 cut(s) | 122, 155, 360, 440, 525 |
| BstKTI | GATC | 1 cut(s) | 343 |
| BstMAI | GTCTC | 2 cut(s) | 402, 444 |
| BstMBI | GATC | 1 cut(s) | 340 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 209, 494 |
| BstNSI | RCATGY | 2 cut(s) | 221, 335 |
| BstSLI | GKGCMC | 1 cut(s) | 476 |
| BstV1I | GCAGC | 1 cut(s) | 509 |
| BstV2I | GAAGAC | 2 cut(s) | 294, 334 |
| BstZ17I | GTATAC | 2 cut(s) | 314, 349 |
| BsuRI | GGCC | 1 cut(s) | 323 |
| BtsCI | GGATG | 5 cut(s) | 122, 155, 360, 440, 525 |
| Cac8I | GCNNGC | 2 cut(s) | 201, 205 |
| Cfr13I | GGNCC | 1 cut(s) | 562 |
| Csp6I | GTAC | 1 cut(s) | 118 |
| CviAII | CATG | 5 cut(s) | 165, 218, 332, 425, 538 |
| CviQI | GTAC | 1 cut(s) | 118 |
| DdeI | CTNAG | 1 cut(s) | 419 |
| DpnI | GATC | 1 cut(s) | 342 |
| DpnII | GATC | 1 cut(s) | 340 |
| EaeI | YGGCCR | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 1 cut(s) | 445 |
| Eco31I | GGTCTC | 1 cut(s) | 444 |
| Eco47I | GGWCC | 1 cut(s) | 562 |
| Eco57I | CTGAAG | 1 cut(s) | 306 |
| Eco88I | CYCGRG | 1 cut(s) | 405 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 268 |
| EcoT14I | CCWWGG | 1 cut(s) | 445 |
| ErhI | CCWWGG | 1 cut(s) | 445 |
| FaeI | CATG | 5 cut(s) | 168, 221, 335, 428, 541 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 248, 280 |
| FatI | CATG | 5 cut(s) | 164, 217, 331, 424, 537 |
| FblI | GTMKAC | 3 cut(s) | 187, 313, 348 |
| Fnu4HI | GCNGC | 1 cut(s) | 498 |
| FokI | GGATG | 5 cut(s) | 109, 142, 367, 427, 512 |
| Fsp4HI | GCNGC | 1 cut(s) | 498 |
| FspBI | CTAG | 3 cut(s) | 143, 246, 494 |
| GluI | GCNGC | 1 cut(s) | 498 |
| GsuI | CTGGAG | 1 cut(s) | 76 |
| HaeIII | GGCC | 1 cut(s) | 323 |
| Hin1II | CATG | 5 cut(s) | 168, 221, 335, 428, 541 |
| HincII | GTYRAC | 2 cut(s) | 188, 298 |
| HindII | GTYRAC | 2 cut(s) | 188, 298 |
| HinfI | GANTC | 1 cut(s) | 77 |
| HphI | GGTGA | 2 cut(s) | 158, 394 |
| Hpy166II | GTNNAC | 5 cut(s) | 120, 188, 298, 314, 349 |
| Hpy188I | TCNGA | 1 cut(s) | 84 |
| Hpy188III | TCNNGA | 2 cut(s) | 407, 560 |
| Hpy8I | GTNNAC | 5 cut(s) | 120, 188, 298, 314, 349 |
| HpyAV | CCTTC | 2 cut(s) | 250, 539 |
| HpyCH4V | TGCA | 3 cut(s) | 181, 199, 482 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 209, 494 |
| HpyF3I | CTNAG | 1 cut(s) | 419 |
| Hsp92II | CATG | 5 cut(s) | 168, 221, 335, 428, 541 |
| Kzo9I | GATC | 1 cut(s) | 340 |
| LmnI | GCTCC | 1 cut(s) | 157 |
| LpnPI | CCDG | 9 cut(s) | 35, 40, 185, 189, 297, 337, 337, 372, 545 |
| Lsp1109I | GCAGC | 1 cut(s) | 509 |
| LweI | GCATC | 2 cut(s) | 139, 345 |
| MaeI | CTAG | 3 cut(s) | 143, 246, 494 |
| MaeIII | GTNAC | 1 cut(s) | 334 |
| MalI | GATC | 1 cut(s) | 342 |
| MboI | GATC | 1 cut(s) | 340 |
| MboII | GAAGA | 2 cut(s) | 299, 339 |
| MhlI | GDGCHC | 2 cut(s) | 432, 476 |
| MlsI | TGGCCA | 1 cut(s) | 323 |
| MluCI | AATT | 5 cut(s) | 28, 63, 93, 511, 541 |
| MluNI | TGGCCA | 1 cut(s) | 323 |
| MnlI | CCTC | 4 cut(s) | 51, 264, 474, 513 |
| Mox20I | TGGCCA | 1 cut(s) | 323 |
| MscI | TGGCCA | 1 cut(s) | 323 |
| MseI | TTAA | 1 cut(s) | 62 |
| MslI | CAYNNNNRTG | 2 cut(s) | 127, 248 |
| Msp20I | TGGCCA | 1 cut(s) | 323 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 209, 494 |
| NdeII | GATC | 1 cut(s) | 340 |
| NlaIII | CATG | 5 cut(s) | 168, 221, 335, 428, 541 |
| NlaIV | GGNNCC | 1 cut(s) | 473 |
| NspI | RCATGY | 2 cut(s) | 221, 335 |
| PaeR7I | CTCGAG | 1 cut(s) | 405 |
| PciI | ACATGT | 1 cut(s) | 331 |
| PfeI | GAWTC | 1 cut(s) | 77 |
| PflFI | GACNNNGTC | 1 cut(s) | 293 |
| PkrI | GCNGC | 1 cut(s) | 499 |
| PscI | ACATGT | 1 cut(s) | 331 |
| PspN4I | GGNNCC | 1 cut(s) | 473 |
| PspPI | GGNCC | 1 cut(s) | 562 |
| PsyI | GACNNNGTC | 1 cut(s) | 293 |
| RsaI | GTAC | 1 cut(s) | 119 |
| RsaNI | GTAC | 1 cut(s) | 118 |
| RseI | CAYNNNNRTG | 2 cut(s) | 127, 248 |
| SalI | GTCGAC | 1 cut(s) | 186 |
| SaqAI | TTAA | 1 cut(s) | 62 |
| SatI | GCNGC | 1 cut(s) | 498 |
| Sau3AI | GATC | 1 cut(s) | 340 |
| Sau96I | GGNCC | 1 cut(s) | 562 |
| SduI | GDGCHC | 2 cut(s) | 432, 476 |
| SetI | ASST | 7 cut(s) | 62, 139, 148, 187, 406, 490, 579 |
| SfaNI | GCATC | 2 cut(s) | 139, 345 |
| Sfr274I | CTCGAG | 1 cut(s) | 405 |
| SinI | GGWCC | 1 cut(s) | 562 |
| SlaI | CTCGAG | 1 cut(s) | 405 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 127, 248 |
| SmlI | CTYRAG | 1 cut(s) | 405 |
| SmoI | CTYRAG | 1 cut(s) | 405 |
| Sse9I | AATT | 5 cut(s) | 28, 63, 93, 511, 541 |
| SspMI | CTAG | 3 cut(s) | 143, 246, 494 |
| StyI | CCWWGG | 1 cut(s) | 445 |
| TaqI | TCGA | 3 cut(s) | 187, 343, 406 |
| TasI | AATT | 5 cut(s) | 28, 63, 93, 511, 541 |
| TfiI | GAWTC | 1 cut(s) | 77 |
| Tru1I | TTAA | 1 cut(s) | 62 |
| Tru9I | TTAA | 1 cut(s) | 62 |
| TseI | GCWGC | 1 cut(s) | 497 |
| TspDTI | ATGAA | 2 cut(s) | 153, 554 |
| Tth111I | GACNNNGTC | 1 cut(s) | 293 |
| VpaK11BI | GGWCC | 1 cut(s) | 562 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 268 |
| XapI | RAATTY | 3 cut(s) | 93, 511, 541 |
| XceI | RCATGY | 2 cut(s) | 221, 335 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 162 |
| XhoI | CTCGAG | 1 cut(s) | 405 |
| XmiI | GTMKAC | 3 cut(s) | 187, 313, 348 |
| XspI | CTAG | 3 cut(s) | 143, 246, 494 |