Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 12 - 124 | 3.7e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 233 |
| AfaI | GTAC | 2 cut(s) | 82, 324 |
| AgsI | TTSAA | 3 cut(s) | 146, 206, 315 |
| AjnI | CCWGG | 1 cut(s) | 168 |
| AluBI | AGCT | 2 cut(s) | 158, 303 |
| AluI | AGCT | 2 cut(s) | 158, 303 |
| Alw21I | GWGCWC | 1 cut(s) | 305 |
| ApeKI | GCWGC | 1 cut(s) | 92 |
| BanII | GRGCYC | 1 cut(s) | 305 |
| BbsI | GAAGAC | 1 cut(s) | 155 |
| Bbv12I | GWGCWC | 1 cut(s) | 305 |
| BbvI | GCAGC | 1 cut(s) | 79 |
| BccI | CCATC | 1 cut(s) | 65 |
| BciT130I | CCWGG | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 189 |
| BfaI | CTAG | 2 cut(s) | 318, 378 |
| BisI | GCNGC | 1 cut(s) | 93 |
| BlsI | GCNGC | 1 cut(s) | 94 |
| Bme1390I | CCNGG | 1 cut(s) | 170 |
| BmrFI | CCNGG | 1 cut(s) | 170 |
| BpiI | GAAGAC | 1 cut(s) | 155 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 5, 35, 242, 272 |
| BseBI | CCWGG | 1 cut(s) | 170 |
| BseMII | CTCAG | 1 cut(s) | 290 |
| BseXI | GCAGC | 1 cut(s) | 79 |
| BsiHKAI | GWGCWC | 1 cut(s) | 305 |
| Bsp1286I | GDGCHC | 1 cut(s) | 305 |
| Bsp143I | GATC | 3 cut(s) | 3, 122, 189 |
| BspACI | CCGC | 1 cut(s) | 233 |
| BspCNI | CTCAG | 1 cut(s) | 291 |
| BssMI | GATC | 3 cut(s) | 3, 122, 189 |
| Bst2UI | CCWGG | 1 cut(s) | 170 |
| Bst4CI | ACNGT | 2 cut(s) | 215, 327 |
| BstC8I | GCNNGC | 1 cut(s) | 103 |
| BstDEI | CTNAG | 1 cut(s) | 299 |
| BstKTI | GATC | 3 cut(s) | 6, 125, 192 |
| BstMBI | GATC | 3 cut(s) | 3, 122, 189 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 98, 125, 155 |
| BstNI | CCWGG | 1 cut(s) | 170 |
| BstSCI | CCNGG | 1 cut(s) | 168 |
| BstV1I | GCAGC | 1 cut(s) | 79 |
| BstV2I | GAAGAC | 1 cut(s) | 155 |
| BtgZI | GCGATG | 1 cut(s) | 164 |
| Cac8I | GCNNGC | 1 cut(s) | 103 |
| Csp6I | GTAC | 2 cut(s) | 81, 323 |
| CviAII | CATG | 2 cut(s) | 136, 187 |
| CviJI | RGCY | 4 cut(s) | 158, 173, 293, 303 |
| CviKI_1 | RGCY | 4 cut(s) | 158, 173, 293, 303 |
| CviQI | GTAC | 2 cut(s) | 81, 323 |
| DdeI | CTNAG | 1 cut(s) | 299 |
| DpnI | GATC | 3 cut(s) | 5, 124, 191 |
| DpnII | GATC | 3 cut(s) | 3, 122, 189 |
| Ecl136II | GAGCTC | 1 cut(s) | 303 |
| Eco24I | GRGCYC | 1 cut(s) | 305 |
| Eco53kI | GAGCTC | 1 cut(s) | 303 |
| EcoICRI | GAGCTC | 1 cut(s) | 303 |
| EcoRII | CCWGG | 1 cut(s) | 168 |
| EcoT38I | GRGCYC | 1 cut(s) | 305 |
| FaeI | CATG | 2 cut(s) | 139, 190 |
| FaiI | YATR | 7 cut(s) | 137, 188, 221, 248, 332, 334, 360 |
| FatI | CATG | 2 cut(s) | 135, 186 |
| FbaI | TGATCA | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 1 cut(s) | 93 |
| FriOI | GRGCYC | 1 cut(s) | 305 |
| Fsp4HI | GCNGC | 1 cut(s) | 93 |
| FspBI | CTAG | 2 cut(s) | 318, 378 |
| GluI | GCNGC | 1 cut(s) | 93 |
| Hin1II | CATG | 2 cut(s) | 139, 190 |
| Hpy166II | GTNNAC | 1 cut(s) | 41 |
| Hpy188I | TCNGA | 2 cut(s) | 262, 300 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 338 |
| Hpy8I | GTNNAC | 1 cut(s) | 41 |
| HpyCH4III | ACNGT | 2 cut(s) | 215, 327 |
| HpyCH4IV | ACGT | 1 cut(s) | 83 |
| HpyCH4V | TGCA | 3 cut(s) | 24, 101, 356 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 98, 125, 155 |
| HpyF3I | CTNAG | 1 cut(s) | 299 |
| HpySE526I | ACGT | 1 cut(s) | 83 |
| Hsp92II | CATG | 2 cut(s) | 139, 190 |
| Ksp22I | TGATCA | 1 cut(s) | 189 |
| Kzo9I | GATC | 3 cut(s) | 3, 122, 189 |
| LpnPI | CCDG | 3 cut(s) | 144, 155, 182 |
| Lsp1109I | GCAGC | 1 cut(s) | 79 |
| MaeI | CTAG | 2 cut(s) | 318, 378 |
| MaeII | ACGT | 1 cut(s) | 83 |
| MaeIII | GTNAC | 1 cut(s) | 226 |
| MalI | GATC | 3 cut(s) | 5, 124, 191 |
| MboI | GATC | 3 cut(s) | 3, 122, 189 |
| MboII | GAAGA | 1 cut(s) | 155 |
| MhlI | GDGCHC | 1 cut(s) | 305 |
| MluCI | AATT | 3 cut(s) | 8, 51, 141 |
| MnlI | CCTC | 3 cut(s) | 41, 244, 274 |
| MseI | TTAA | 1 cut(s) | 237 |
| MspR9I | CCNGG | 1 cut(s) | 170 |
| MvaI | CCWGG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 98, 125, 155 |
| NdeII | GATC | 3 cut(s) | 3, 122, 189 |
| NlaIII | CATG | 2 cut(s) | 139, 190 |
| PkrI | GCNGC | 1 cut(s) | 94 |
| Psp124BI | GAGCTC | 1 cut(s) | 305 |
| Psp6I | CCWGG | 1 cut(s) | 168 |
| PspGI | CCWGG | 1 cut(s) | 168 |
| RsaI | GTAC | 2 cut(s) | 82, 324 |
| RsaNI | GTAC | 2 cut(s) | 81, 323 |
| SacI | GAGCTC | 1 cut(s) | 305 |
| SaqAI | TTAA | 1 cut(s) | 237 |
| SatI | GCNGC | 1 cut(s) | 93 |
| Sau3AI | GATC | 3 cut(s) | 3, 122, 189 |
| ScrFI | CCNGG | 1 cut(s) | 170 |
| SduI | GDGCHC | 1 cut(s) | 305 |
| SetI | ASST | 4 cut(s) | 86, 160, 305, 375 |
| Sse9I | AATT | 3 cut(s) | 8, 51, 141 |
| SsiI | CCGC | 1 cut(s) | 233 |
| SspI | AATATT | 1 cut(s) | 196 |
| SspMI | CTAG | 2 cut(s) | 318, 378 |
| SstI | GAGCTC | 1 cut(s) | 305 |
| StyD4I | CCNGG | 1 cut(s) | 168 |
| TaaI | ACNGT | 2 cut(s) | 215, 327 |
| TaiI | ACGT | 1 cut(s) | 86 |
| TaqI | TCGA | 3 cut(s) | 6, 67, 121 |
| TasI | AATT | 3 cut(s) | 8, 51, 141 |
| TatI | WGTACW | 1 cut(s) | 322 |
| Tru1I | TTAA | 1 cut(s) | 237 |
| Tru9I | TTAA | 1 cut(s) | 237 |
| TseI | GCWGC | 1 cut(s) | 92 |
| TspDTI | ATGAA | 2 cut(s) | 32, 167 |
| XspI | CTAG | 2 cut(s) | 318, 378 |