Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 814 |
| Acc36I | ACCTGC | 1 cut(s) | 901 |
| AccI | GTMKAC | 1 cut(s) | 93 |
| AciI | CCGC | 1 cut(s) | 234 |
| AclWI | GGATC | 4 cut(s) | 328, 375, 923, 936 |
| AcuI | CTGAAG | 2 cut(s) | 41, 777 |
| AcyI | GRCGYC | 3 cut(s) | 158, 175, 287 |
| AfaI | GTAC | 1 cut(s) | 305 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 502 |
| AflII | CTTAAG | 2 cut(s) | 995, 1096 |
| AgeI | ACCGGT | 1 cut(s) | 961 |
| AgsI | TTSAA | 4 cut(s) | 24, 878, 1067, 1115 |
| AjnI | CCWGG | 4 cut(s) | 15, 638, 774, 839 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 342, 374, 1025, 1057 |
| AluBI | AGCT | 2 cut(s) | 55, 1101 |
| AluI | AGCT | 2 cut(s) | 55, 1101 |
| Alw21I | GWGCWC | 1 cut(s) | 587 |
| Alw26I | GTCTC | 5 cut(s) | 25, 102, 149, 176, 278 |
| Alw44I | GTGCAC | 1 cut(s) | 583 |
| AlwI | GGATC | 4 cut(s) | 328, 375, 923, 936 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 370 |
| AoxI | GGCC | 3 cut(s) | 188, 387, 493 |
| ApaLI | GTGCAC | 1 cut(s) | 583 |
| AsiGI | ACCGGT | 1 cut(s) | 961 |
| AspA2I | CCTAGG | 1 cut(s) | 496 |
| AspLEI | GCGC | 1 cut(s) | 230 |
| AspS9I | GGNCC | 2 cut(s) | 292, 421 |
| AsuC2I | CCSGG | 3 cut(s) | 162, 391, 419 |
| AsuHPI | GGTGA | 1 cut(s) | 407 |
| AsuNHI | GCTAGC | 1 cut(s) | 715 |
| AvaII | GGWCC | 2 cut(s) | 292, 421 |
| AvrII | CCTAGG | 1 cut(s) | 496 |
| BaeGI | GKGCMC | 1 cut(s) | 587 |
| BamHI | GGATCC | 1 cut(s) | 928 |
| Bbv12I | GWGCWC | 1 cut(s) | 587 |
| BbvCI | CCTCAGC | 1 cut(s) | 1074 |
| BccI | CCATC | 6 cut(s) | 125, 293, 404, 433, 461, 896 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 713, 747 |
| BciT130I | CCWGG | 4 cut(s) | 17, 640, 776, 841 |
| BcnI | CCSGG | 3 cut(s) | 162, 391, 419 |
| BcoDI | GTCTC | 5 cut(s) | 25, 102, 149, 176, 278 |
| BfaI | CTAG | 5 cut(s) | 458, 497, 588, 716, 1104 |
| BfoI | RGCGCY | 1 cut(s) | 231 |
| BfrI | CTTAAG | 2 cut(s) | 995, 1096 |
| BfuAI | ACCTGC | 1 cut(s) | 901 |
| BisI | GCNGC | 1 cut(s) | 235 |
| BlnI | CCTAGG | 1 cut(s) | 496 |
| BlsI | GCNGC | 1 cut(s) | 236 |
| Bme1390I | CCNGG | 7 cut(s) | 17, 162, 391, 419, 640, 776, 841 |
| Bme18I | GGWCC | 2 cut(s) | 292, 421 |
| BmgT120I | GGNCC | 2 cut(s) | 292, 421 |
| BmiI | GGNNCC | 5 cut(s) | 294, 422, 507, 930, 939 |
| BmrFI | CCNGG | 7 cut(s) | 17, 162, 391, 419, 640, 776, 841 |
| BmsI | GCATC | 1 cut(s) | 634 |
| BmtI | GCTAGC | 1 cut(s) | 719 |
| BpmI | CTGGAG | 3 cut(s) | 285, 302, 862 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1074 |
| BpuEI | CTTGAG | 2 cut(s) | 410, 495 |
| BpuMI | CCSGG | 3 cut(s) | 162, 391, 419 |
| Bsa29I | ATCGAT | 1 cut(s) | 399 |
| BsaHI | GRCGYC | 3 cut(s) | 158, 175, 287 |
| BsaI | GGTCTC | 1 cut(s) | 102 |
| BsaJI | CCNNGG | 3 cut(s) | 496, 639, 932 |
| BsaWI | WCCGGW | 1 cut(s) | 961 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 502 |
| Bse118I | RCCGGY | 5 cut(s) | 190, 230, 344, 447, 961 |
| Bse1I | ACTGG | 2 cut(s) | 268, 285 |
| Bse3DI | GCAATG | 2 cut(s) | 106, 717 |
| BseBI | CCWGG | 4 cut(s) | 17, 640, 776, 841 |
| BseCI | ATCGAT | 1 cut(s) | 399 |
| BseDI | CCNNGG | 3 cut(s) | 496, 639, 932 |
| BseGI | GGATG | 5 cut(s) | 136, 150, 214, 649, 907 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BseMI | GCAATG | 2 cut(s) | 106, 717 |
| BseMII | CTCAG | 3 cut(s) | 54, 375, 1065 |
| BseNI | ACTGG | 2 cut(s) | 268, 285 |
| BseRI | GAGGAG | 2 cut(s) | 680, 859 |
| BseSI | GKGCMC | 1 cut(s) | 587 |
| BsgI | GTGCAG | 1 cut(s) | 493 |
| Bsh1285I | CGRYCG | 1 cut(s) | 966 |
| BshFI | GGCC | 3 cut(s) | 190, 389, 495 |
| BshTI | ACCGGT | 1 cut(s) | 961 |
| BshVI | ATCGAT | 1 cut(s) | 399 |
| BsiEI | CGRYCG | 1 cut(s) | 966 |
| BsiHKAI | GWGCWC | 1 cut(s) | 587 |
| BsiSI | CCGG | 9 cut(s) | 161, 191, 231, 290, 345, 390, 418, 448, 962 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BsmAI | GTCTC | 5 cut(s) | 25, 102, 149, 176, 278 |
| BsmBI | CGTCTC | 3 cut(s) | 149, 176, 278 |
| BsmI | GAATGC | 1 cut(s) | 1089 |
| BsnI | GGCC | 3 cut(s) | 190, 389, 495 |
| Bso31I | GGTCTC | 1 cut(s) | 102 |
| Bsp1286I | GDGCHC | 1 cut(s) | 587 |
| Bsp143I | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| BspACI | CCGC | 1 cut(s) | 234 |
| BspANI | GGCC | 3 cut(s) | 190, 389, 495 |
| BspCNI | CTCAG | 3 cut(s) | 55, 376, 1066 |
| BspDI | ATCGAT | 1 cut(s) | 399 |
| BspLI | GGNNCC | 5 cut(s) | 294, 422, 507, 930, 939 |
| BspMI | ACCTGC | 1 cut(s) | 901 |
| BspOI | GCTAGC | 1 cut(s) | 719 |
| BspPI | GGATC | 4 cut(s) | 328, 375, 923, 936 |
| BspTI | CTTAAG | 2 cut(s) | 995, 1096 |
| BspTNI | GGTCTC | 1 cut(s) | 102 |
| BsrDI | GCAATG | 2 cut(s) | 106, 717 |
| BsrFI | RCCGGY | 5 cut(s) | 190, 230, 344, 447, 961 |
| BsrI | ACTGG | 2 cut(s) | 268, 285 |
| BssAI | RCCGGY | 5 cut(s) | 190, 230, 344, 447, 961 |
| BssECI | CCNNGG | 3 cut(s) | 496, 639, 932 |
| BssMI | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| BssNI | GRCGYC | 3 cut(s) | 158, 175, 287 |
| BssT1I | CCWWGG | 2 cut(s) | 496, 932 |
| Bst2UI | CCWGG | 4 cut(s) | 17, 640, 776, 841 |
| Bst4CI | ACNGT | 5 cut(s) | 36, 113, 220, 582, 1168 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 1062 |
| BstACI | GRCGYC | 3 cut(s) | 158, 175, 287 |
| BstAFI | CTTAAG | 2 cut(s) | 995, 1096 |
| BstC8I | GCNNGC | 2 cut(s) | 232, 717 |
| BstDEI | CTNAG | 3 cut(s) | 63, 384, 1074 |
| BstEII | GGTNACC | 1 cut(s) | 413 |
| BstF5I | GGATG | 5 cut(s) | 136, 150, 214, 649, 907 |
| BstH2I | RGCGCY | 1 cut(s) | 231 |
| BstHHI | GCGC | 1 cut(s) | 230 |
| BstKTI | GATC | 8 cut(s) | 49, 172, 204, 323, 370, 399, 762, 931 |
| BstMAI | GTCTC | 5 cut(s) | 25, 102, 149, 176, 278 |
| BstMBI | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| BstMCI | CGRYCG | 1 cut(s) | 966 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 234, 716, 721 |
| BstNI | CCWGG | 4 cut(s) | 17, 640, 776, 841 |
| BstNSI | RCATGY | 1 cut(s) | 824 |
| BstPI | GGTNACC | 1 cut(s) | 413 |
| BstSCI | CCNGG | 7 cut(s) | 15, 160, 389, 417, 638, 774, 839 |
| BstSLI | GKGCMC | 1 cut(s) | 587 |
| BstX2I | RGATCY | 3 cut(s) | 320, 367, 928 |
| BstYI | RGATCY | 3 cut(s) | 320, 367, 928 |
| Bsu15I | ATCGAT | 1 cut(s) | 399 |
| BsuRI | GGCC | 3 cut(s) | 190, 389, 495 |
| BsuTUI | ATCGAT | 1 cut(s) | 399 |
| BtsCI | GGATG | 5 cut(s) | 136, 150, 214, 649, 907 |
| BtsI | GCAGTG | 1 cut(s) | 335 |
| BtsIMutI | CAGTG | 1 cut(s) | 335 |
| BveI | ACCTGC | 1 cut(s) | 901 |
| Cac8I | GCNNGC | 2 cut(s) | 232, 717 |
| CaiI | CAGNNNCTG | 1 cut(s) | 370 |
| CfoI | GCGC | 1 cut(s) | 230 |
| Cfr10I | RCCGGY | 5 cut(s) | 190, 230, 344, 447, 961 |
| Cfr13I | GGNCC | 2 cut(s) | 292, 421 |
| ClaI | ATCGAT | 1 cut(s) | 399 |
| CseI | GACGC | 3 cut(s) | 166, 183, 295 |
| CsiI | ACCWGGT | 1 cut(s) | 774 |
| Csp6I | GTAC | 1 cut(s) | 304 |
| CspAI | ACCGGT | 1 cut(s) | 961 |
| CviAII | CATG | 1 cut(s) | 821 |
| CviQI | GTAC | 1 cut(s) | 304 |
| DdeI | CTNAG | 3 cut(s) | 63, 384, 1074 |
| DpnI | GATC | 8 cut(s) | 48, 171, 203, 322, 369, 398, 761, 930 |
| DpnII | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 814 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 814 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 1062 |
| EarI | CTCTTC | 2 cut(s) | 345, 1062 |
| Eco130I | CCWWGG | 2 cut(s) | 496, 932 |
| Eco31I | GGTCTC | 1 cut(s) | 102 |
| Eco47I | GGWCC | 2 cut(s) | 292, 421 |
| Eco57I | CTGAAG | 2 cut(s) | 41, 777 |
| Eco91I | GGTNACC | 1 cut(s) | 413 |
| EcoO109I | RGGNCCY | 1 cut(s) | 421 |
| EcoO65I | GGTNACC | 1 cut(s) | 413 |
| EcoRII | CCWGG | 4 cut(s) | 15, 638, 774, 839 |
| EcoT14I | CCWWGG | 2 cut(s) | 496, 932 |
| EcoT22I | ATGCAT | 1 cut(s) | 1091 |
| ErhI | CCWWGG | 2 cut(s) | 496, 932 |
| Esp3I | CGTCTC | 3 cut(s) | 149, 176, 278 |
| FaeI | CATG | 1 cut(s) | 824 |
| FaiI | YATR | 8 cut(s) | 240, 528, 533, 572, 772, 822, 1062, 1087 |
| FatI | CATG | 1 cut(s) | 820 |
| FblI | GTMKAC | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 1 cut(s) | 235 |
| FokI | GGATG | 5 cut(s) | 143, 157, 221, 656, 914 |
| Fsp4HI | GCNGC | 1 cut(s) | 235 |
| FspBI | CTAG | 5 cut(s) | 458, 497, 588, 716, 1104 |
| GlaI | GCGC | 1 cut(s) | 229 |
| GluI | GCNGC | 1 cut(s) | 235 |
| GsuI | CTGGAG | 3 cut(s) | 285, 302, 862 |
| HaeII | RGCGCY | 1 cut(s) | 231 |
| HaeIII | GGCC | 3 cut(s) | 190, 389, 495 |
| HapII | CCGG | 9 cut(s) | 161, 191, 231, 290, 345, 390, 418, 448, 962 |
| HgaI | GACGC | 3 cut(s) | 166, 183, 295 |
| HhaI | GCGC | 1 cut(s) | 230 |
| Hin1I | GRCGYC | 3 cut(s) | 158, 175, 287 |
| Hin1II | CATG | 1 cut(s) | 824 |
| Hin6I | GCGC | 1 cut(s) | 228 |
| HinP1I | GCGC | 1 cut(s) | 228 |
| HincII | GTYRAC | 1 cut(s) | 985 |
| HindII | GTYRAC | 1 cut(s) | 985 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 335, 815, 945 |
| HpaI | GTTAAC | 1 cut(s) | 985 |
| HpaII | CCGG | 9 cut(s) | 161, 191, 231, 290, 345, 390, 418, 448, 962 |
| HphI | GGTGA | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 3 cut(s) | 94, 585, 985 |
| Hpy188I | TCNGA | 5 cut(s) | 9, 64, 385, 660, 697 |
| Hpy188III | TCNNGA | 2 cut(s) | 550, 805 |
| Hpy8I | GTNNAC | 3 cut(s) | 94, 585, 985 |
| Hpy99I | CGWCG | 1 cut(s) | 177 |
| HpyAV | CCTTC | 5 cut(s) | 311, 547, 655, 801, 1031 |
| HpyCH4III | ACNGT | 5 cut(s) | 36, 113, 220, 582, 1168 |
| HpyCH4V | TGCA | 6 cut(s) | 139, 309, 474, 585, 710, 1089 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 234, 716, 721 |
| HpyF3I | CTNAG | 3 cut(s) | 63, 384, 1074 |
| Hsp92I | GRCGYC | 3 cut(s) | 158, 175, 287 |
| Hsp92II | CATG | 1 cut(s) | 824 |
| HspAI | GCGC | 1 cut(s) | 228 |
| KroI | GCCGGC | 1 cut(s) | 230 |
| KroNI | GCCGGC | 1 cut(s) | 232 |
| KspAI | GTTAAC | 1 cut(s) | 985 |
| Kzo9I | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| LmnI | GCTCC | 2 cut(s) | 907, 979 |
| LweI | GCATC | 1 cut(s) | 634 |
| MabI | ACCWGGT | 1 cut(s) | 774 |
| MaeI | CTAG | 5 cut(s) | 458, 497, 588, 716, 1104 |
| MaeIII | GTNAC | 3 cut(s) | 214, 413, 816 |
| MalI | GATC | 8 cut(s) | 48, 171, 203, 322, 369, 398, 761, 930 |
| MboI | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| MflI | RGATCY | 3 cut(s) | 320, 367, 928 |
| MhlI | GDGCHC | 1 cut(s) | 587 |
| MluCI | AATT | 5 cut(s) | 483, 703, 870, 1011, 1021 |
| MlyI | GAGTC | 2 cut(s) | 824, 939 |
| MmeI | TCCRAC | 1 cut(s) | 568 |
| Mph1103I | ATGCAT | 1 cut(s) | 1091 |
| MreI | CGCCGGCG | 1 cut(s) | 230 |
| MroNI | GCCGGC | 1 cut(s) | 230 |
| MseI | TTAA | 6 cut(s) | 702, 869, 984, 996, 1010, 1097 |
| MspCI | CTTAAG | 2 cut(s) | 995, 1096 |
| MspI | CCGG | 9 cut(s) | 161, 191, 231, 290, 345, 390, 418, 448, 962 |
| MspR9I | CCNGG | 7 cut(s) | 17, 162, 391, 419, 640, 776, 841 |
| Mva1269I | GAATGC | 1 cut(s) | 1089 |
| MvaI | CCWGG | 4 cut(s) | 17, 640, 776, 841 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 234, 716, 721 |
| NaeI | GCCGGC | 1 cut(s) | 232 |
| NciI | CCSGG | 3 cut(s) | 162, 391, 419 |
| NdeII | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| NgoMIV | GCCGGC | 1 cut(s) | 230 |
| NheI | GCTAGC | 1 cut(s) | 715 |
| NlaIII | CATG | 1 cut(s) | 824 |
| NlaIV | GGNNCC | 5 cut(s) | 294, 422, 507, 930, 939 |
| NmeAIII | GCCGAG | 1 cut(s) | 203 |
| NmuCI | GTSAC | 3 cut(s) | 214, 413, 816 |
| NsiI | ATGCAT | 1 cut(s) | 1091 |
| NspI | RCATGY | 1 cut(s) | 824 |
| PctI | GAATGC | 1 cut(s) | 1089 |
| PdiI | GCCGGC | 1 cut(s) | 232 |
| PfeI | GAWTC | 3 cut(s) | 4, 20, 335 |
| PfoI | TCCNGGA | 2 cut(s) | 15, 839 |
| PinAI | ACCGGT | 1 cut(s) | 961 |
| PkrI | GCNGC | 1 cut(s) | 236 |
| PleI | GAGTC | 2 cut(s) | 823, 939 |
| PpsI | GAGTC | 2 cut(s) | 823, 939 |
| PpuMI | RGGWCCY | 1 cut(s) | 421 |
| Psp5II | RGGWCCY | 1 cut(s) | 421 |
| Psp6I | CCWGG | 4 cut(s) | 15, 638, 774, 839 |
| PspEI | GGTNACC | 1 cut(s) | 413 |
| PspGI | CCWGG | 4 cut(s) | 15, 638, 774, 839 |
| PspN4I | GGNNCC | 5 cut(s) | 294, 422, 507, 930, 939 |
| PspPI | GGNCC | 2 cut(s) | 292, 421 |
| PspPPI | RGGWCCY | 1 cut(s) | 421 |
| PstNI | CAGNNNCTG | 1 cut(s) | 370 |
| PsuI | RGATCY | 3 cut(s) | 320, 367, 928 |
| RsaI | GTAC | 1 cut(s) | 305 |
| RsaNI | GTAC | 1 cut(s) | 304 |
| SaqAI | TTAA | 6 cut(s) | 702, 869, 984, 996, 1010, 1097 |
| SatI | GCNGC | 1 cut(s) | 235 |
| Sau3AI | GATC | 8 cut(s) | 46, 169, 201, 320, 367, 396, 759, 928 |
| Sau96I | GGNCC | 2 cut(s) | 292, 421 |
| SchI | GAGTC | 2 cut(s) | 824, 939 |
| ScrFI | CCNGG | 7 cut(s) | 17, 162, 391, 419, 640, 776, 841 |
| SduI | GDGCHC | 1 cut(s) | 587 |
| SetI | ASST | 7 cut(s) | 57, 593, 780, 915, 1002, 1103, 1175 |
| SexAI | ACCWGGT | 1 cut(s) | 774 |
| SfaNI | GCATC | 1 cut(s) | 634 |
| SgrAI | CRCCGGYG | 1 cut(s) | 230 |
| SinI | GGWCC | 2 cut(s) | 292, 421 |
| SmlI | CTYRAG | 4 cut(s) | 425, 510, 995, 1096 |
| SmoI | CTYRAG | 4 cut(s) | 425, 510, 995, 1096 |
| Sse9I | AATT | 5 cut(s) | 483, 703, 870, 1011, 1021 |
| SsiI | CCGC | 1 cut(s) | 234 |
| SspI | AATATT | 2 cut(s) | 27, 785 |
| SspMI | CTAG | 5 cut(s) | 458, 497, 588, 716, 1104 |
| StyD4I | CCNGG | 7 cut(s) | 15, 160, 389, 417, 638, 774, 839 |
| StyI | CCWWGG | 2 cut(s) | 496, 932 |
| TaaI | ACNGT | 5 cut(s) | 36, 113, 220, 582, 1168 |
| TaqI | TCGA | 4 cut(s) | 172, 200, 259, 399 |
| TasI | AATT | 5 cut(s) | 483, 703, 870, 1011, 1021 |
| TauI | GCSGC | 1 cut(s) | 237 |
| TfiI | GAWTC | 3 cut(s) | 4, 20, 335 |
| Tru1I | TTAA | 6 cut(s) | 702, 869, 984, 996, 1010, 1097 |
| Tru9I | TTAA | 6 cut(s) | 702, 869, 984, 996, 1010, 1097 |
| TscAI | CASTG | 1 cut(s) | 335 |
| TseFI | GTSAC | 3 cut(s) | 214, 413, 816 |
| Tsp45I | GTSAC | 3 cut(s) | 214, 413, 816 |
| TspDTI | ATGAA | 4 cut(s) | 420, 744, 819, 1050 |
| TspRI | CASTG | 1 cut(s) | 335 |
| Vha464I | CTTAAG | 2 cut(s) | 995, 1096 |
| VneI | GTGCAC | 1 cut(s) | 583 |
| VpaK11BI | GGWCC | 2 cut(s) | 292, 421 |
| XceI | RCATGY | 1 cut(s) | 824 |
| XmaJI | CCTAGG | 1 cut(s) | 496 |
| XmiI | GTMKAC | 1 cut(s) | 93 |
| XspI | CTAG | 5 cut(s) | 458, 497, 588, 716, 1104 |
| Zsp2I | ATGCAT | 1 cut(s) | 1091 |