NAC domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 166 - 250 | 9.6e-08 | Leucine-rich repeat region |
| Malectin | PF11721 | 431 - 616 | 7.9e-40 | Malectin domain |
| Pkinase | PF00069 | 699 - 962 | 1.1e-44 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 702 - 964 | 8.9e-47 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1287 |
| AatII | GACGTC | 1 cut(s) | 1642 |
| Acc36I | ACCTGC | 4 cut(s) | 1694, 1808, 1819, 1840 |
| AccB1I | GGYRCC | 3 cut(s) | 11, 290, 1067 |
| AccI | GTMKAC | 1 cut(s) | 948 |
| AccII | CGCG | 1 cut(s) | 1816 |
| AciI | CCGC | 4 cut(s) | 627, 1816, 2121, 2576 |
| AclWI | GGATC | 2 cut(s) | 1432, 2690 |
| AcsI | RAATTY | 8 cut(s) | 139, 233, 388, 580, 1625, 2689, 2795, 2957 |
| AcuI | CTGAAG | 3 cut(s) | 1177, 1212, 2041 |
| AcyI | GRCGYC | 2 cut(s) | 225, 1639 |
| AdeI | CACNNNGTG | 1 cut(s) | 2153 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 209, 1817, 2575, 2705, 2887 |
| AflIII | ACRYGT | 2 cut(s) | 1597, 2384 |
| AhlI | ACTAGT | 2 cut(s) | 1895, 2773 |
| AjnI | CCWGG | 3 cut(s) | 1273, 1659, 2259 |
| Alw21I | GWGCWC | 2 cut(s) | 854, 2846 |
| Alw26I | GTCTC | 6 cut(s) | 192, 966, 1036, 1630, 2353, 3132 |
| Alw44I | GTGCAC | 1 cut(s) | 2842 |
| AlwI | GGATC | 2 cut(s) | 1432, 2690 |
| Ama87I | CYCGRG | 1 cut(s) | 1076 |
| AoxI | GGCC | 5 cut(s) | 168, 1270, 2472, 2684, 3094 |
| ApaLI | GTGCAC | 1 cut(s) | 2842 |
| ApeKI | GCWGC | 7 cut(s) | 215, 425, 1610, 1803, 1841, 1853, 2189 |
| ApoI | RAATTY | 8 cut(s) | 139, 233, 388, 580, 1625, 2689, 2795, 2957 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2942, 2974 |
| AseI | ATTAAT | 1 cut(s) | 1299 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 584, 2896 |
| AspLEI | GCGC | 1 cut(s) | 1816 |
| AsuC2I | CCSGG | 2 cut(s) | 1621, 2937 |
| AsuHPI | GGTGA | 5 cut(s) | 370, 641, 2720, 2847, 3093 |
| AsuII | TTCGAA | 1 cut(s) | 2449 |
| AvaI | CYCGRG | 1 cut(s) | 1076 |
| AvaII | GGWCC | 8 cut(s) | 413, 773, 1310, 1370, 1797, 1829, 2045, 2129 |
| BaeGI | GKGCMC | 1 cut(s) | 2846 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2548, 2581 |
| BanI | GGYRCC | 3 cut(s) | 11, 290, 1067 |
| BanII | GRGCYC | 2 cut(s) | 854, 1365 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 762, 794, 1149, 1181 |
| BbsI | GAAGAC | 3 cut(s) | 1214, 1317, 2639 |
| Bbv12I | GWGCWC | 2 cut(s) | 854, 2846 |
| BbvCI | CCTCAGC | 1 cut(s) | 902 |
| BbvI | GCAGC | 7 cut(s) | 202, 437, 1597, 1790, 1840, 1853, 2201 |
| BceAI | ACGGC | 1 cut(s) | 1758 |
| BciT130I | CCWGG | 3 cut(s) | 1275, 1661, 2261 |
| BciVI | GTATCC | 1 cut(s) | 699 |
| BclI | TGATCA | 1 cut(s) | 2338 |
| BcnI | CCSGG | 2 cut(s) | 1621, 2937 |
| BcoDI | GTCTC | 6 cut(s) | 192, 966, 1036, 1630, 2353, 3132 |
| BcuI | ACTAGT | 2 cut(s) | 1895, 2773 |
| BfaI | CTAG | 8 cut(s) | 575, 681, 1127, 1896, 2412, 2774, 2784, 3023 |
| BfmI | CTRYAG | 3 cut(s) | 423, 2137, 2187 |
| BfuAI | ACCTGC | 4 cut(s) | 1694, 1808, 1819, 1840 |
| BfuI | GTATCC | 1 cut(s) | 699 |
| BisI | GCNGC | 7 cut(s) | 216, 426, 1611, 1804, 1842, 1854, 2190 |
| BlpI | GCTNAGC | 1 cut(s) | 2532 |
| BlsI | GCNGC | 7 cut(s) | 217, 427, 1612, 1805, 1843, 1855, 2191 |
| BmcAI | AGTACT | 2 cut(s) | 1950, 3010 |
| Bme1390I | CCNGG | 5 cut(s) | 1275, 1621, 1661, 2261, 2937 |
| Bme18I | GGWCC | 8 cut(s) | 413, 773, 1310, 1370, 1797, 1829, 2045, 2129 |
| BmeT110I | CYCGRG | 1 cut(s) | 1076 |
| BmiI | GGNNCC | 5 cut(s) | 13, 292, 1069, 1798, 2303 |
| BmrFI | CCNGG | 5 cut(s) | 1275, 1621, 1661, 2261, 2937 |
| BmrI | ACTGGG | 1 cut(s) | 1923 |
| BmsI | GCATC | 4 cut(s) | 54, 477, 1100, 2201 |
| BmuI | ACTGGG | 1 cut(s) | 1923 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2639 |
| BpiI | GAAGAC | 3 cut(s) | 1214, 1317, 2639 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 841, 873 |
| BpmI | CTGGAG | 1 cut(s) | 2342 |
| Bpu10I | CCTNAGC | 1 cut(s) | 902 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2532 |
| Bpu14I | TTCGAA | 1 cut(s) | 2449 |
| BpuEI | CTTGAG | 6 cut(s) | 51, 78, 108, 766, 1568, 1577 |
| BpuMI | CCSGG | 2 cut(s) | 1621, 2937 |
| BsaHI | GRCGYC | 2 cut(s) | 225, 1639 |
| BsaI | GGTCTC | 1 cut(s) | 192 |
| BsaJI | CCNNGG | 4 cut(s) | 1273, 1366, 1660, 2200 |
| BsaWI | WCCGGW | 4 cut(s) | 194, 209, 1858, 2599 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 209, 1817, 2575, 2705, 2887 |
| Bse1I | ACTGG | 9 cut(s) | 448, 997, 1396, 1438, 1918, 2212, 2475, 2957, 3000 |
| Bse3DI | GCAATG | 3 cut(s) | 188, 429, 1423 |
| BseBI | CCWGG | 3 cut(s) | 1275, 1661, 2261 |
| BseDI | CCNNGG | 4 cut(s) | 1273, 1366, 1660, 2200 |
| BseGI | GGATG | 4 cut(s) | 2192, 2502, 2870, 3004 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 209, 1817, 2575, 2705, 2887 |
| BseMI | GCAATG | 3 cut(s) | 188, 429, 1423 |
| BseMII | CTCAG | 7 cut(s) | 512, 561, 893, 977, 1305, 2214, 2277 |
| BseNI | ACTGG | 9 cut(s) | 448, 997, 1396, 1438, 1918, 2212, 2475, 2957, 3000 |
| BseRI | GAGGAG | 2 cut(s) | 75, 1456 |
| BseSI | GKGCMC | 1 cut(s) | 2846 |
| BseXI | GCAGC | 7 cut(s) | 202, 437, 1597, 1790, 1840, 1853, 2201 |
| BsgI | GTGCAG | 2 cut(s) | 1839, 2266 |
| Bsh1236I | CGCG | 1 cut(s) | 1816 |
| BshFI | GGCC | 5 cut(s) | 170, 1272, 2474, 2686, 3096 |
| BshNI | GGYRCC | 3 cut(s) | 11, 290, 1067 |
| BsiHKAI | GWGCWC | 2 cut(s) | 854, 2846 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1076 |
| BsiSI | CCGG | 7 cut(s) | 195, 210, 288, 1620, 1859, 2600, 2937 |
| BslFI | GGGAC | 2 cut(s) | 1810, 2863 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 209, 1817, 2575, 2705, 2887 |
| BsmAI | GTCTC | 6 cut(s) | 192, 966, 1036, 1630, 2353, 3132 |
| BsmBI | CGTCTC | 2 cut(s) | 1630, 2353 |
| BsmFI | GGGAC | 2 cut(s) | 1810, 2863 |
| BsmI | GAATGC | 4 cut(s) | 844, 1137, 1665, 2898 |
| BsnI | GGCC | 5 cut(s) | 170, 1272, 2474, 2686, 3096 |
| Bso31I | GGTCTC | 1 cut(s) | 192 |
| BsoBI | CYCGRG | 1 cut(s) | 1076 |
| Bsp119I | TTCGAA | 1 cut(s) | 2449 |
| Bsp1286I | GDGCHC | 3 cut(s) | 854, 1365, 2846 |
| Bsp143I | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2532 |
| BspACI | CCGC | 4 cut(s) | 627, 1816, 2121, 2576 |
| BspANI | GGCC | 5 cut(s) | 170, 1272, 2474, 2686, 3096 |
| BspCNI | CTCAG | 7 cut(s) | 513, 562, 894, 976, 1306, 2215, 2278 |
| BspFNI | CGCG | 1 cut(s) | 1816 |
| BspLI | GGNNCC | 5 cut(s) | 13, 292, 1069, 1798, 2303 |
| BspMAI | CTGCAG | 2 cut(s) | 427, 2191 |
| BspMI | ACCTGC | 4 cut(s) | 1694, 1808, 1819, 1840 |
| BspPI | GGATC | 2 cut(s) | 1432, 2690 |
| BspQI | GCTCTTC | 2 cut(s) | 859, 2016 |
| BspT104I | TTCGAA | 1 cut(s) | 2449 |
| BspT107I | GGYRCC | 3 cut(s) | 11, 290, 1067 |
| BspTNI | GGTCTC | 1 cut(s) | 192 |
| BsrDI | GCAATG | 3 cut(s) | 188, 429, 1423 |
| BsrI | ACTGG | 9 cut(s) | 448, 997, 1396, 1438, 1918, 2212, 2475, 2957, 3000 |
| BssECI | CCNNGG | 4 cut(s) | 1273, 1366, 1660, 2200 |
| BssMI | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| BssNAI | GTATAC | 1 cut(s) | 949 |
| BssNI | GRCGYC | 2 cut(s) | 225, 1639 |
| BssT1I | CCWWGG | 2 cut(s) | 1366, 2200 |
| Bst1107I | GTATAC | 1 cut(s) | 949 |
| Bst2UI | CCWGG | 3 cut(s) | 1275, 1661, 2261 |
| Bst4CI | ACNGT | 8 cut(s) | 463, 1576, 1876, 2333, 2923, 2977, 3013, 3139 |
| Bst6I | CTCTTC | 4 cut(s) | 859, 1101, 2016, 2155 |
| BstACI | GRCGYC | 2 cut(s) | 225, 1639 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 297, 431 |
| BstBI | TTCGAA | 1 cut(s) | 2449 |
| BstC8I | GCNNGC | 3 cut(s) | 449, 488, 1240 |
| BstF5I | GGATG | 4 cut(s) | 2192, 2502, 2870, 3004 |
| BstFNI | CGCG | 1 cut(s) | 1816 |
| BstHHI | GCGC | 1 cut(s) | 1816 |
| BstKTI | GATC | 4 cut(s) | 527, 1427, 2341, 2698 |
| BstMAI | GTCTC | 6 cut(s) | 192, 966, 1036, 1630, 2353, 3132 |
| BstMBI | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| BstNI | CCWGG | 3 cut(s) | 1275, 1661, 2261 |
| BstNSI | RCATGY | 1 cut(s) | 1601 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2639 |
| BstSCI | CCNGG | 5 cut(s) | 1273, 1619, 1659, 2259, 2935 |
| BstSFI | CTRYAG | 3 cut(s) | 423, 2137, 2187 |
| BstSLI | GKGCMC | 1 cut(s) | 2846 |
| BstUI | CGCG | 1 cut(s) | 1816 |
| BstV1I | GCAGC | 7 cut(s) | 202, 437, 1597, 1790, 1840, 1853, 2201 |
| BstV2I | GAAGAC | 3 cut(s) | 1214, 1317, 2639 |
| BstX2I | RGATCY | 1 cut(s) | 1424 |
| BstYI | RGATCY | 1 cut(s) | 1424 |
| BstZ17I | GTATAC | 1 cut(s) | 949 |
| BsuI | GTATCC | 1 cut(s) | 699 |
| BsuRI | GGCC | 5 cut(s) | 170, 1272, 2474, 2686, 3096 |
| BtsCI | GGATG | 4 cut(s) | 2192, 2502, 2870, 3004 |
| BtsI | GCAGTG | 1 cut(s) | 1222 |
| BtsIMutI | CAGTG | 8 cut(s) | 111, 150, 395, 1222, 1431, 1855, 2283, 2683 |
| BveI | ACCTGC | 4 cut(s) | 1694, 1808, 1819, 1840 |
| Cac8I | GCNNGC | 3 cut(s) | 449, 488, 1240 |
| CfoI | GCGC | 1 cut(s) | 1816 |
| CseI | GACGC | 1 cut(s) | 233 |
| CsiI | ACCWGGT | 1 cut(s) | 2259 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 217, 252 |
| CviAII | CATG | 6 cut(s) | 204, 1598, 1748, 2611, 2750, 2875 |
| DpnI | GATC | 4 cut(s) | 526, 1426, 2340, 2697 |
| DpnII | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| DraI | TTTAAA | 1 cut(s) | 2367 |
| DraIII | CACNNNGTG | 1 cut(s) | 2153 |
| Eam1104I | CTCTTC | 4 cut(s) | 859, 1101, 2016, 2155 |
| EarI | CTCTTC | 4 cut(s) | 859, 1101, 2016, 2155 |
| EciI | GGCGGA | 1 cut(s) | 2136 |
| Ecl136II | GAGCTC | 1 cut(s) | 852 |
| Eco130I | CCWWGG | 2 cut(s) | 1366, 2200 |
| Eco24I | GRGCYC | 2 cut(s) | 854, 1365 |
| Eco31I | GGTCTC | 1 cut(s) | 192 |
| Eco32I | GATATC | 1 cut(s) | 2514 |
| Eco47I | GGWCC | 8 cut(s) | 413, 773, 1310, 1370, 1797, 1829, 2045, 2129 |
| Eco53kI | GAGCTC | 1 cut(s) | 852 |
| Eco57I | CTGAAG | 3 cut(s) | 1177, 1212, 2041 |
| Eco88I | CYCGRG | 1 cut(s) | 1076 |
| EcoICRI | GAGCTC | 1 cut(s) | 852 |
| EcoO109I | RGGNCCY | 4 cut(s) | 413, 773, 1310, 1797 |
| EcoRI | GAATTC | 2 cut(s) | 139, 2795 |
| EcoRII | CCWGG | 3 cut(s) | 1273, 1659, 2259 |
| EcoRV | GATATC | 1 cut(s) | 2514 |
| EcoT14I | CCWWGG | 2 cut(s) | 1366, 2200 |
| EcoT38I | GRGCYC | 2 cut(s) | 854, 1365 |
| ErhI | CCWWGG | 2 cut(s) | 1366, 2200 |
| Esp3I | CGTCTC | 2 cut(s) | 1630, 2353 |
| FaeI | CATG | 6 cut(s) | 207, 1601, 1751, 2614, 2753, 2878 |
| FaqI | GGGAC | 2 cut(s) | 1810, 2863 |
| FatI | CATG | 6 cut(s) | 203, 1597, 1747, 2610, 2749, 2874 |
| FauI | CCCGC | 2 cut(s) | 1809, 2569 |
| FauNDI | CATATG | 1 cut(s) | 266 |
| FbaI | TGATCA | 1 cut(s) | 2338 |
| FblI | GTMKAC | 1 cut(s) | 948 |
| Fnu4HI | GCNGC | 7 cut(s) | 216, 426, 1611, 1804, 1842, 1854, 2190 |
| FokI | GGATG | 4 cut(s) | 2179, 2489, 2857, 3011 |
| FriOI | GRGCYC | 2 cut(s) | 854, 1365 |
| Fsp4HI | GCNGC | 7 cut(s) | 216, 426, 1611, 1804, 1842, 1854, 2190 |
| FspBI | CTAG | 8 cut(s) | 575, 681, 1127, 1896, 2412, 2774, 2784, 3023 |
| GlaI | GCGC | 1 cut(s) | 1815 |
| GluI | GCNGC | 7 cut(s) | 216, 426, 1611, 1804, 1842, 1854, 2190 |
| GsuI | CTGGAG | 1 cut(s) | 2342 |
| HaeIII | GGCC | 5 cut(s) | 170, 1272, 2474, 2686, 3096 |
| HapII | CCGG | 7 cut(s) | 195, 210, 288, 1620, 1859, 2600, 2937 |
| HgaI | GACGC | 1 cut(s) | 233 |
| HhaI | GCGC | 1 cut(s) | 1816 |
| Hin1I | GRCGYC | 2 cut(s) | 225, 1639 |
| Hin1II | CATG | 6 cut(s) | 207, 1601, 1751, 2614, 2753, 2878 |
| Hin6I | GCGC | 1 cut(s) | 1814 |
| HinP1I | GCGC | 1 cut(s) | 1814 |
| HincII | GTYRAC | 1 cut(s) | 2382 |
| HindII | GTYRAC | 1 cut(s) | 2382 |
| HindIII | AAGCTT | 3 cut(s) | 734, 2108, 2534 |
| HpaII | CCGG | 7 cut(s) | 195, 210, 288, 1620, 1859, 2600, 2937 |
| HphI | GGTGA | 5 cut(s) | 370, 641, 2720, 2847, 3093 |
| Hpy166II | GTNNAC | 8 cut(s) | 949, 1208, 1579, 2382, 2458, 2618, 2779, 2844 |
| Hpy8I | GTNNAC | 8 cut(s) | 949, 1208, 1579, 2382, 2458, 2618, 2779, 2844 |
| Hpy99I | CGWCG | 1 cut(s) | 2021 |
| HpyCH4III | ACNGT | 8 cut(s) | 463, 1576, 1876, 2333, 2923, 2977, 3013, 3139 |
| HpyCH4IV | ACGT | 4 cut(s) | 1322, 1639, 2362, 2386 |
| HpySE526I | ACGT | 4 cut(s) | 1322, 1639, 2362, 2386 |
| Hsp92I | GRCGYC | 2 cut(s) | 225, 1639 |
| Hsp92II | CATG | 6 cut(s) | 207, 1601, 1751, 2614, 2753, 2878 |
| HspAI | GCGC | 1 cut(s) | 1814 |
| Ksp22I | TGATCA | 1 cut(s) | 2338 |
| Kzo9I | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| LguI | GCTCTTC | 2 cut(s) | 859, 2016 |
| LmnI | GCTCC | 6 cut(s) | 82, 88, 212, 849, 1134, 2307 |
| Lsp1109I | GCAGC | 7 cut(s) | 202, 437, 1597, 1790, 1840, 1853, 2201 |
| LweI | GCATC | 4 cut(s) | 54, 477, 1100, 2201 |
| MabI | ACCWGGT | 1 cut(s) | 2259 |
| MaeI | CTAG | 8 cut(s) | 575, 681, 1127, 1896, 2412, 2774, 2784, 3023 |
| MaeII | ACGT | 4 cut(s) | 1322, 1639, 2362, 2386 |
| MaeIII | GTNAC | 8 cut(s) | 269, 1387, 1565, 1880, 2218, 2914, 2923, 2939 |
| MalI | GATC | 4 cut(s) | 526, 1426, 2340, 2697 |
| MboI | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| MfeI | CAATTG | 2 cut(s) | 2180, 2744 |
| MflI | RGATCY | 1 cut(s) | 1424 |
| MhlI | GDGCHC | 3 cut(s) | 854, 1365, 2846 |
| MlyI | GAGTC | 3 cut(s) | 1001, 2774, 3062 |
| MmeI | TCCRAC | 3 cut(s) | 1402, 1916, 2023 |
| MroXI | GAANNNNTTC | 2 cut(s) | 584, 2896 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2463 |
| MspA1I | CMGCKG | 1 cut(s) | 967 |
| MspI | CCGG | 7 cut(s) | 195, 210, 288, 1620, 1859, 2600, 2937 |
| MspR9I | CCNGG | 5 cut(s) | 1275, 1621, 1661, 2261, 2937 |
| MunI | CAATTG | 2 cut(s) | 2180, 2744 |
| Mva1269I | GAATGC | 4 cut(s) | 844, 1137, 1665, 2898 |
| MvaI | CCWGG | 3 cut(s) | 1275, 1661, 2261 |
| MvnI | CGCG | 1 cut(s) | 1816 |
| NciI | CCSGG | 2 cut(s) | 1621, 2937 |
| NdeI | CATATG | 1 cut(s) | 266 |
| NdeII | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| NlaIII | CATG | 6 cut(s) | 207, 1601, 1751, 2614, 2753, 2878 |
| NlaIV | GGNNCC | 5 cut(s) | 13, 292, 1069, 1798, 2303 |
| NmuCI | GTSAC | 3 cut(s) | 269, 1387, 2914 |
| NspI | RCATGY | 1 cut(s) | 1601 |
| NspV | TTCGAA | 1 cut(s) | 2449 |
| PciI | ACATGT | 1 cut(s) | 1597 |
| PciSI | GCTCTTC | 2 cut(s) | 859, 2016 |
| PctI | GAATGC | 4 cut(s) | 844, 1137, 1665, 2898 |
| PdmI | GAANNNNTTC | 2 cut(s) | 584, 2896 |
| PfeI | GAWTC | 7 cut(s) | 634, 923, 1278, 1493, 1906, 2277, 2438 |
| PkrI | GCNGC | 7 cut(s) | 217, 427, 1612, 1805, 1843, 1855, 2191 |
| PleI | GAGTC | 3 cut(s) | 1001, 2774, 3062 |
| PpsI | GAGTC | 3 cut(s) | 1001, 2774, 3062 |
| PpuMI | RGGWCCY | 4 cut(s) | 413, 773, 1310, 1797 |
| PscI | ACATGT | 1 cut(s) | 1597 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2639 |
| PshBI | ATTAAT | 1 cut(s) | 1299 |
| PsiI | TTATAA | 1 cut(s) | 1287 |
| Psp124BI | GAGCTC | 1 cut(s) | 854 |
| Psp5II | RGGWCCY | 4 cut(s) | 413, 773, 1310, 1797 |
| Psp6I | CCWGG | 3 cut(s) | 1273, 1659, 2259 |
| PspGI | CCWGG | 3 cut(s) | 1273, 1659, 2259 |
| PspN4I | GGNNCC | 5 cut(s) | 13, 292, 1069, 1798, 2303 |
| PspPPI | RGGWCCY | 4 cut(s) | 413, 773, 1310, 1797 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1941, 1973 |
| PstI | CTGCAG | 2 cut(s) | 427, 2191 |
| PsuI | RGATCY | 1 cut(s) | 1424 |
| PvuII | CAGCTG | 1 cut(s) | 967 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2463 |
| SacI | GAGCTC | 1 cut(s) | 854 |
| SapI | GCTCTTC | 2 cut(s) | 859, 2016 |
| SatI | GCNGC | 7 cut(s) | 216, 426, 1611, 1804, 1842, 1854, 2190 |
| Sau3AI | GATC | 4 cut(s) | 524, 1424, 2338, 2695 |
| ScaI | AGTACT | 2 cut(s) | 1950, 3010 |
| SchI | GAGTC | 3 cut(s) | 1001, 2774, 3062 |
| ScrFI | CCNGG | 5 cut(s) | 1275, 1621, 1661, 2261, 2937 |
| SduI | GDGCHC | 3 cut(s) | 854, 1365, 2846 |
| SexAI | ACCWGGT | 1 cut(s) | 2259 |
| SfaNI | GCATC | 4 cut(s) | 54, 477, 1100, 2201 |
| SfcI | CTRYAG | 3 cut(s) | 423, 2137, 2187 |
| SfuI | TTCGAA | 1 cut(s) | 2449 |
| SinI | GGWCC | 8 cut(s) | 413, 773, 1310, 1370, 1797, 1829, 2045, 2129 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2463 |
| SmlI | CTYRAG | 6 cut(s) | 66, 93, 123, 745, 1556, 1583 |
| SmoI | CTYRAG | 6 cut(s) | 66, 93, 123, 745, 1556, 1583 |
| SpeI | ACTAGT | 2 cut(s) | 1895, 2773 |
| SsiI | CCGC | 4 cut(s) | 627, 1816, 2121, 2576 |
| SspI | AATATT | 3 cut(s) | 163, 916, 2482 |
| SspMI | CTAG | 8 cut(s) | 575, 681, 1127, 1896, 2412, 2774, 2784, 3023 |
| SstI | GAGCTC | 1 cut(s) | 854 |
| StyD4I | CCNGG | 5 cut(s) | 1273, 1619, 1659, 2259, 2935 |
| StyI | CCWWGG | 2 cut(s) | 1366, 2200 |
| TaaI | ACNGT | 8 cut(s) | 463, 1576, 1876, 2333, 2923, 2977, 3013, 3139 |
| TaiI | ACGT | 4 cut(s) | 1325, 1642, 2365, 2389 |
| TaqI | TCGA | 4 cut(s) | 836, 1909, 2449, 2730 |
| TatI | WGTACW | 3 cut(s) | 1948, 3008, 3080 |
| TfiI | GAWTC | 7 cut(s) | 634, 923, 1278, 1493, 1906, 2277, 2438 |
| TscAI | CASTG | 8 cut(s) | 118, 150, 402, 1222, 1438, 1855, 2290, 2683 |
| TseFI | GTSAC | 3 cut(s) | 269, 1387, 2914 |
| TseI | GCWGC | 7 cut(s) | 215, 425, 1610, 1803, 1841, 1853, 2189 |
| Tsp45I | GTSAC | 3 cut(s) | 269, 1387, 2914 |
| TspDTI | ATGAA | 8 cut(s) | 706, 893, 1368, 1518, 1855, 2112, 2766, 3107 |
| TspGWI | ACGGA | 1 cut(s) | 2289 |
| TspRI | CASTG | 8 cut(s) | 118, 150, 402, 1222, 1438, 1855, 2290, 2683 |
| VneI | GTGCAC | 1 cut(s) | 2842 |
| VpaK11BI | GGWCC | 8 cut(s) | 413, 773, 1310, 1370, 1797, 1829, 2045, 2129 |
| VspI | ATTAAT | 1 cut(s) | 1299 |
| XapI | RAATTY | 8 cut(s) | 139, 233, 388, 580, 1625, 2689, 2795, 2957 |
| XbaI | TCTAGA | 2 cut(s) | 1126, 2783 |
| XceI | RCATGY | 1 cut(s) | 1601 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 357, 388 |
| XmiI | GTMKAC | 1 cut(s) | 948 |
| XmnI | GAANNNNTTC | 2 cut(s) | 584, 2896 |
| XspI | CTAG | 8 cut(s) | 575, 681, 1127, 1896, 2412, 2774, 2784, 3023 |
| ZraI | GACGTC | 1 cut(s) | 1640 |
| ZrmI | AGTACT | 2 cut(s) | 1950, 3010 |