Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 902 |
| Acc36I | ACCTGC | 1 cut(s) | 902 |
| AccB1I | GGYRCC | 1 cut(s) | 839 |
| AccI | GTMKAC | 1 cut(s) | 84 |
| AccII | CGCG | 1 cut(s) | 52 |
| AccIII | TCCGGA | 1 cut(s) | 307 |
| AciI | CCGC | 4 cut(s) | 15, 18, 257, 287 |
| AclWI | GGATC | 4 cut(s) | 12, 125, 133, 146 |
| AcsI | RAATTY | 3 cut(s) | 151, 247, 1000 |
| AdeI | CACNNNGTG | 1 cut(s) | 725 |
| AfaI | GTAC | 3 cut(s) | 66, 109, 480 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 464, 469 |
| AflIII | ACRYGT | 2 cut(s) | 481, 857 |
| AhlI | ACTAGT | 1 cut(s) | 401 |
| AjiI | CACGTC | 1 cut(s) | 860 |
| AjnI | CCWGG | 1 cut(s) | 463 |
| AleI | CACNNNNGTG | 1 cut(s) | 905 |
| AluBI | AGCT | 9 cut(s) | 38, 235, 266, 442, 455, 678, 980, 988, 1011 |
| AluI | AGCT | 9 cut(s) | 38, 235, 266, 442, 455, 678, 980, 988, 1011 |
| Alw21I | GWGCWC | 1 cut(s) | 399 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| AlwI | GGATC | 4 cut(s) | 12, 125, 133, 146 |
| Aor13HI | TCCGGA | 1 cut(s) | 307 |
| AoxI | GGCC | 3 cut(s) | 146, 639, 960 |
| ApeKI | GCWGC | 3 cut(s) | 38, 452, 943 |
| ApoI | RAATTY | 3 cut(s) | 151, 247, 1000 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 249 |
| AspLEI | GCGC | 1 cut(s) | 52 |
| AspS9I | GGNCC | 2 cut(s) | 176, 640 |
| AsuHPI | GGTGA | 1 cut(s) | 838 |
| AvaII | GGWCC | 1 cut(s) | 176 |
| BamHI | GGATCC | 1 cut(s) | 138 |
| BanI | GGYRCC | 1 cut(s) | 839 |
| Bbv12I | GWGCWC | 1 cut(s) | 399 |
| BbvI | GCAGC | 3 cut(s) | 25, 464, 955 |
| BccI | CCATC | 4 cut(s) | 202, 209, 548, 830 |
| BciT130I | CCWGG | 1 cut(s) | 465 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| BcuI | ACTAGT | 1 cut(s) | 401 |
| BfaI | CTAG | 7 cut(s) | 42, 402, 675, 713, 723, 989, 1014 |
| BfuAI | ACCTGC | 1 cut(s) | 902 |
| BisI | GCNGC | 5 cut(s) | 16, 19, 39, 453, 944 |
| BlsI | GCNGC | 5 cut(s) | 17, 20, 40, 454, 945 |
| Bme1390I | CCNGG | 1 cut(s) | 465 |
| Bme18I | GGWCC | 1 cut(s) | 176 |
| BmgBI | CACGTC | 1 cut(s) | 860 |
| BmgT120I | GGNCC | 2 cut(s) | 176, 640 |
| BmiI | GGNNCC | 4 cut(s) | 140, 178, 642, 841 |
| BmrFI | CCNGG | 1 cut(s) | 465 |
| BmsI | GCATC | 1 cut(s) | 880 |
| Bsa29I | ATCGAT | 1 cut(s) | 834 |
| BsaJI | CCNNGG | 7 cut(s) | 78, 134, 143, 463, 464, 850, 963 |
| BsaWI | WCCGGW | 1 cut(s) | 307 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 464, 469 |
| Bse1I | ACTGG | 2 cut(s) | 164, 545 |
| BseAI | TCCGGA | 1 cut(s) | 307 |
| BseBI | CCWGG | 1 cut(s) | 465 |
| BseCI | ATCGAT | 1 cut(s) | 834 |
| BseDI | CCNNGG | 7 cut(s) | 78, 134, 143, 463, 464, 850, 963 |
| BseGI | GGATG | 4 cut(s) | 87, 133, 265, 559 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 464, 469 |
| BseMII | CTCAG | 1 cut(s) | 541 |
| BseNI | ACTGG | 2 cut(s) | 164, 545 |
| BseRI | GAGGAG | 2 cut(s) | 24, 1010 |
| BseXI | GCAGC | 3 cut(s) | 25, 464, 955 |
| Bsh1236I | CGCG | 1 cut(s) | 52 |
| BshFI | GGCC | 3 cut(s) | 148, 641, 962 |
| BshNI | GGYRCC | 1 cut(s) | 839 |
| BshVI | ATCGAT | 1 cut(s) | 834 |
| BsiHKAI | GWGCWC | 1 cut(s) | 399 |
| BsiSI | CCGG | 2 cut(s) | 91, 308 |
| BslFI | GGGAC | 2 cut(s) | 162, 701 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 464, 469 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmBI | CGTCTC | 1 cut(s) | 96 |
| BsmFI | GGGAC | 2 cut(s) | 162, 701 |
| BsnI | GGCC | 3 cut(s) | 148, 641, 962 |
| Bsp1286I | GDGCHC | 1 cut(s) | 399 |
| Bsp13I | TCCGGA | 1 cut(s) | 307 |
| Bsp1407I | TGTACA | 1 cut(s) | 64 |
| Bsp143I | GATC | 4 cut(s) | 4, 130, 138, 202 |
| BspACI | CCGC | 4 cut(s) | 15, 18, 257, 287 |
| BspANI | GGCC | 3 cut(s) | 148, 641, 962 |
| BspCNI | CTCAG | 1 cut(s) | 540 |
| BspDI | ATCGAT | 1 cut(s) | 834 |
| BspEI | TCCGGA | 1 cut(s) | 307 |
| BspFNI | CGCG | 1 cut(s) | 52 |
| BspLI | GGNNCC | 4 cut(s) | 140, 178, 642, 841 |
| BspMI | ACCTGC | 1 cut(s) | 902 |
| BspPI | GGATC | 4 cut(s) | 12, 125, 133, 146 |
| BspQI | GCTCTTC | 1 cut(s) | 415 |
| BspT107I | GGYRCC | 1 cut(s) | 839 |
| BsrGI | TGTACA | 1 cut(s) | 64 |
| BsrI | ACTGG | 2 cut(s) | 164, 545 |
| BssECI | CCNNGG | 7 cut(s) | 78, 134, 143, 463, 464, 850, 963 |
| BssMI | GATC | 4 cut(s) | 4, 130, 138, 202 |
| BssT1I | CCWWGG | 4 cut(s) | 134, 143, 850, 963 |
| Bst2UI | CCWGG | 1 cut(s) | 465 |
| Bst4CI | ACNGT | 5 cut(s) | 79, 107, 806, 826, 904 |
| Bst6I | CTCTTC | 2 cut(s) | 415, 532 |
| BstAUI | TGTACA | 1 cut(s) | 64 |
| BstC8I | GCNNGC | 4 cut(s) | 696, 970, 982, 986 |
| BstDEI | CTNAG | 2 cut(s) | 290, 527 |
| BstDSI | CCRYGG | 1 cut(s) | 78 |
| BstF5I | GGATG | 4 cut(s) | 87, 133, 265, 559 |
| BstFNI | CGCG | 1 cut(s) | 52 |
| BstHHI | GCGC | 1 cut(s) | 52 |
| BstKTI | GATC | 4 cut(s) | 7, 133, 141, 205 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 4 cut(s) | 4, 130, 138, 202 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 47, 263, 691 |
| BstNI | CCWGG | 1 cut(s) | 465 |
| BstNSI | RCATGY | 1 cut(s) | 485 |
| BstSCI | CCNGG | 1 cut(s) | 463 |
| BstUI | CGCG | 1 cut(s) | 52 |
| BstV1I | GCAGC | 3 cut(s) | 25, 464, 955 |
| BstX2I | RGATCY | 1 cut(s) | 138 |
| BstYI | RGATCY | 1 cut(s) | 138 |
| Bsu15I | ATCGAT | 1 cut(s) | 834 |
| BsuRI | GGCC | 3 cut(s) | 148, 641, 962 |
| BsuTUI | ATCGAT | 1 cut(s) | 834 |
| BtgI | CCRYGG | 1 cut(s) | 78 |
| BtrI | CACGTC | 1 cut(s) | 860 |
| BtsCI | GGATG | 4 cut(s) | 87, 133, 265, 559 |
| BtsI | GCAGTG | 1 cut(s) | 67 |
| BtsIMutI | CAGTG | 2 cut(s) | 67, 932 |
| BveI | ACCTGC | 1 cut(s) | 902 |
| Cac8I | GCNNGC | 4 cut(s) | 696, 970, 982, 986 |
| CfoI | GCGC | 1 cut(s) | 52 |
| Cfr13I | GGNCC | 2 cut(s) | 176, 640 |
| ClaI | ATCGAT | 1 cut(s) | 834 |
| Csp6I | GTAC | 3 cut(s) | 65, 108, 479 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 936, 971 |
| CviAII | CATG | 2 cut(s) | 482, 596 |
| CviQI | GTAC | 3 cut(s) | 65, 108, 479 |
| DdeI | CTNAG | 2 cut(s) | 290, 527 |
| DpnI | GATC | 4 cut(s) | 6, 132, 140, 204 |
| DpnII | GATC | 4 cut(s) | 4, 130, 138, 202 |
| DraIII | CACNNNGTG | 1 cut(s) | 725 |
| Eam1104I | CTCTTC | 2 cut(s) | 415, 532 |
| EarI | CTCTTC | 2 cut(s) | 415, 532 |
| Eco130I | CCWWGG | 4 cut(s) | 134, 143, 850, 963 |
| Eco147I | AGGCCT | 1 cut(s) | 962 |
| Eco47I | GGWCC | 1 cut(s) | 176 |
| EcoRII | CCWGG | 1 cut(s) | 463 |
| EcoT14I | CCWWGG | 4 cut(s) | 134, 143, 850, 963 |
| ErhI | CCWWGG | 4 cut(s) | 134, 143, 850, 963 |
| Esp3I | CGTCTC | 1 cut(s) | 96 |
| FaeI | CATG | 2 cut(s) | 485, 599 |
| FaqI | GGGAC | 2 cut(s) | 162, 701 |
| FatI | CATG | 2 cut(s) | 481, 595 |
| FblI | GTMKAC | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 5 cut(s) | 16, 19, 39, 453, 944 |
| FokI | GGATG | 4 cut(s) | 74, 140, 272, 566 |
| Fsp4HI | GCNGC | 5 cut(s) | 16, 19, 39, 453, 944 |
| FspBI | CTAG | 7 cut(s) | 42, 402, 675, 713, 723, 989, 1014 |
| GlaI | GCGC | 1 cut(s) | 51 |
| GluI | GCNGC | 5 cut(s) | 16, 19, 39, 453, 944 |
| HaeIII | GGCC | 3 cut(s) | 148, 641, 962 |
| HapII | CCGG | 2 cut(s) | 91, 308 |
| HhaI | GCGC | 1 cut(s) | 52 |
| Hin1II | CATG | 2 cut(s) | 485, 599 |
| Hin6I | GCGC | 1 cut(s) | 50 |
| HinP1I | GCGC | 1 cut(s) | 50 |
| HincII | GTYRAC | 1 cut(s) | 85 |
| HindII | GTYRAC | 1 cut(s) | 85 |
| HindIII | AAGCTT | 1 cut(s) | 440 |
| HinfI | GANTC | 2 cut(s) | 29, 430 |
| HpaII | CCGG | 2 cut(s) | 91, 308 |
| HphI | GGTGA | 1 cut(s) | 838 |
| Hpy166II | GTNNAC | 3 cut(s) | 65, 85, 348 |
| Hpy188I | TCNGA | 5 cut(s) | 120, 207, 244, 429, 934 |
| Hpy188III | TCNNGA | 1 cut(s) | 308 |
| Hpy8I | GTNNAC | 3 cut(s) | 65, 85, 348 |
| Hpy99I | CGWCG | 2 cut(s) | 26, 864 |
| HpyAV | CCTTC | 1 cut(s) | 463 |
| HpyCH4III | ACNGT | 5 cut(s) | 79, 107, 806, 826, 904 |
| HpyCH4IV | ACGT | 1 cut(s) | 859 |
| HpyCH4V | TGCA | 6 cut(s) | 362, 374, 763, 809, 943, 984 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 47, 263, 691 |
| HpyF3I | CTNAG | 2 cut(s) | 290, 527 |
| HpySE526I | ACGT | 1 cut(s) | 859 |
| Hsp92II | CATG | 2 cut(s) | 485, 599 |
| HspAI | GCGC | 1 cut(s) | 50 |
| Kpn2I | TCCGGA | 1 cut(s) | 307 |
| Kzo9I | GATC | 4 cut(s) | 4, 130, 138, 202 |
| LguI | GCTCTTC | 1 cut(s) | 415 |
| LmnI | GCTCC | 2 cut(s) | 284, 460 |
| Lsp1109I | GCAGC | 3 cut(s) | 25, 464, 955 |
| LweI | GCATC | 1 cut(s) | 880 |
| MaeI | CTAG | 7 cut(s) | 42, 402, 675, 713, 723, 989, 1014 |
| MaeII | ACGT | 1 cut(s) | 859 |
| MalI | GATC | 4 cut(s) | 6, 132, 140, 204 |
| MboI | GATC | 4 cut(s) | 4, 130, 138, 202 |
| MboII | GAAGA | 2 cut(s) | 402, 549 |
| MflI | RGATCY | 1 cut(s) | 138 |
| MhlI | GDGCHC | 1 cut(s) | 399 |
| MluCI | AATT | 6 cut(s) | 151, 247, 273, 369, 418, 1000 |
| MlyI | GAGTC | 1 cut(s) | 439 |
| MmeI | TCCRAC | 2 cut(s) | 79, 770 |
| MnlI | CCTC | 9 cut(s) | 5, 19, 47, 190, 424, 544, 860, 952, 988 |
| MroI | TCCGGA | 1 cut(s) | 307 |
| MroXI | GAANNNNTTC | 1 cut(s) | 249 |
| MseI | TTAA | 1 cut(s) | 474 |
| MslI | CAYNNNNRTG | 1 cut(s) | 905 |
| MspI | CCGG | 2 cut(s) | 91, 308 |
| MspR9I | CCNGG | 1 cut(s) | 465 |
| MvaI | CCWGG | 1 cut(s) | 465 |
| MvnI | CGCG | 1 cut(s) | 52 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 47, 263, 691 |
| NdeII | GATC | 4 cut(s) | 4, 130, 138, 202 |
| NlaIII | CATG | 2 cut(s) | 485, 599 |
| NlaIV | GGNNCC | 4 cut(s) | 140, 178, 642, 841 |
| NspI | RCATGY | 1 cut(s) | 485 |
| OliI | CACNNNNGTG | 1 cut(s) | 905 |
| PaqCI | CACCTGC | 1 cut(s) | 902 |
| PasI | CCCWGGG | 1 cut(s) | 464 |
| PceI | AGGCCT | 1 cut(s) | 962 |
| PciI | ACATGT | 1 cut(s) | 481 |
| PciSI | GCTCTTC | 1 cut(s) | 415 |
| PdmI | GAANNNNTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 1 cut(s) | 29 |
| PkrI | GCNGC | 5 cut(s) | 17, 20, 40, 454, 945 |
| PleI | GAGTC | 1 cut(s) | 438 |
| PpsI | GAGTC | 1 cut(s) | 438 |
| PscI | ACATGT | 1 cut(s) | 481 |
| Psp6I | CCWGG | 1 cut(s) | 463 |
| PspGI | CCWGG | 1 cut(s) | 463 |
| PspN4I | GGNNCC | 4 cut(s) | 140, 178, 642, 841 |
| PspPI | GGNCC | 2 cut(s) | 176, 640 |
| PsuI | RGATCY | 1 cut(s) | 138 |
| RsaI | GTAC | 3 cut(s) | 66, 109, 480 |
| RsaNI | GTAC | 3 cut(s) | 65, 108, 479 |
| RseI | CAYNNNNRTG | 1 cut(s) | 905 |
| SalI | GTCGAC | 1 cut(s) | 83 |
| SapI | GCTCTTC | 1 cut(s) | 415 |
| SaqAI | TTAA | 1 cut(s) | 474 |
| SatI | GCNGC | 5 cut(s) | 16, 19, 39, 453, 944 |
| Sau3AI | GATC | 4 cut(s) | 4, 130, 138, 202 |
| Sau96I | GGNCC | 2 cut(s) | 176, 640 |
| SchI | GAGTC | 1 cut(s) | 439 |
| ScrFI | CCNGG | 1 cut(s) | 465 |
| SduI | GDGCHC | 1 cut(s) | 399 |
| SfaNI | GCATC | 1 cut(s) | 880 |
| SinI | GGWCC | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 905 |
| SpeI | ACTAGT | 1 cut(s) | 401 |
| Sse9I | AATT | 6 cut(s) | 151, 247, 273, 369, 418, 1000 |
| SseBI | AGGCCT | 1 cut(s) | 962 |
| SsiI | CCGC | 4 cut(s) | 15, 18, 257, 287 |
| SspMI | CTAG | 7 cut(s) | 42, 402, 675, 713, 723, 989, 1014 |
| StuI | AGGCCT | 1 cut(s) | 962 |
| StyD4I | CCNGG | 1 cut(s) | 463 |
| StyI | CCWWGG | 4 cut(s) | 134, 143, 850, 963 |
| TaaI | ACNGT | 5 cut(s) | 79, 107, 806, 826, 904 |
| TaiI | ACGT | 1 cut(s) | 862 |
| TaqI | TCGA | 3 cut(s) | 7, 84, 834 |
| TasI | AATT | 6 cut(s) | 151, 247, 273, 369, 418, 1000 |
| TatI | WGTACW | 1 cut(s) | 64 |
| TauI | GCSGC | 2 cut(s) | 18, 21 |
| TfiI | GAWTC | 1 cut(s) | 29 |
| Tru1I | TTAA | 1 cut(s) | 474 |
| Tru9I | TTAA | 1 cut(s) | 474 |
| TscAI | CASTG | 2 cut(s) | 67, 932 |
| TseI | GCWGC | 3 cut(s) | 38, 452, 943 |
| TspDTI | ATGAA | 2 cut(s) | 276, 350 |
| TspGWI | ACGGA | 1 cut(s) | 590 |
| TspRI | CASTG | 2 cut(s) | 67, 932 |
| VpaK11BI | GGWCC | 1 cut(s) | 176 |
| XapI | RAATTY | 3 cut(s) | 151, 247, 1000 |
| XceI | RCATGY | 1 cut(s) | 485 |
| XmiI | GTMKAC | 1 cut(s) | 84 |
| XmnI | GAANNNNTTC | 1 cut(s) | 249 |
| XspI | CTAG | 7 cut(s) | 42, 402, 675, 713, 723, 989, 1014 |