Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 8 - 127 | 5.8e-25 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 267 |
| AdeI | CACNNNGTG | 1 cut(s) | 197 |
| AfaI | GTAC | 1 cut(s) | 458 |
| AgsI | TTSAA | 1 cut(s) | 293 |
| AluBI | AGCT | 2 cut(s) | 181, 428 |
| AluI | AGCT | 2 cut(s) | 181, 428 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AlwI | GGATC | 1 cut(s) | 267 |
| ApeKI | GCWGC | 1 cut(s) | 178 |
| AspS9I | GGNCC | 1 cut(s) | 351 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 326 |
| AvaII | GGWCC | 1 cut(s) | 351 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BccI | CCATC | 1 cut(s) | 23 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfaI | CTAG | 3 cut(s) | 311, 377, 443 |
| BfmI | CTRYAG | 2 cut(s) | 327, 452 |
| BisI | GCNGC | 1 cut(s) | 179 |
| BlsI | GCNGC | 1 cut(s) | 180 |
| Bme18I | GGWCC | 1 cut(s) | 351 |
| BmgT120I | GGNCC | 1 cut(s) | 351 |
| BmsI | GCATC | 1 cut(s) | 436 |
| BpmI | CTGGAG | 1 cut(s) | 414 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| BsaAI | YACGTR | 1 cut(s) | 80 |
| BsaBI | GATNNNNATC | 1 cut(s) | 465 |
| Bse3DI | GCAATG | 2 cut(s) | 99, 108 |
| Bse8I | GATNNNNATC | 1 cut(s) | 465 |
| BseJI | GATNNNNATC | 1 cut(s) | 465 |
| BseMI | GCAATG | 2 cut(s) | 99, 108 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| Bsp143I | GATC | 1 cut(s) | 259 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspPI | GGATC | 1 cut(s) | 267 |
| BsrDI | GCAATG | 2 cut(s) | 99, 108 |
| BssMI | GATC | 1 cut(s) | 259 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 110 |
| BstBAI | YACGTR | 1 cut(s) | 80 |
| BstC8I | GCNNGC | 2 cut(s) | 106, 159 |
| BstDEI | CTNAG | 2 cut(s) | 150, 229 |
| BstKTI | GATC | 1 cut(s) | 262 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMBI | GATC | 1 cut(s) | 259 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 15, 110, 146 |
| BstSFI | CTRYAG | 2 cut(s) | 327, 452 |
| BstSNI | TACGTA | 1 cut(s) | 80 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 2 cut(s) | 106, 159 |
| Cfr13I | GGNCC | 1 cut(s) | 351 |
| Csp6I | GTAC | 1 cut(s) | 457 |
| CviAII | CATG | 4 cut(s) | 19, 56, 146, 362 |
| CviJI | RGCY | 3 cut(s) | 9, 181, 428 |
| CviKI_1 | RGCY | 3 cut(s) | 9, 181, 428 |
| CviQI | GTAC | 1 cut(s) | 457 |
| DdeI | CTNAG | 2 cut(s) | 150, 229 |
| DpnI | GATC | 1 cut(s) | 261 |
| DpnII | GATC | 1 cut(s) | 259 |
| DraIII | CACNNNGTG | 1 cut(s) | 197 |
| Eco105I | TACGTA | 1 cut(s) | 80 |
| Eco47I | GGWCC | 1 cut(s) | 351 |
| FaeI | CATG | 4 cut(s) | 22, 59, 149, 365 |
| FatI | CATG | 4 cut(s) | 18, 55, 145, 361 |
| FauNDI | CATATG | 1 cut(s) | 408 |
| Fnu4HI | GCNGC | 1 cut(s) | 179 |
| Fsp4HI | GCNGC | 1 cut(s) | 179 |
| FspBI | CTAG | 3 cut(s) | 311, 377, 443 |
| GluI | GCNGC | 1 cut(s) | 179 |
| GsuI | CTGGAG | 1 cut(s) | 414 |
| Hin1II | CATG | 4 cut(s) | 22, 59, 149, 365 |
| HinfI | GANTC | 2 cut(s) | 282, 395 |
| HphI | GGTGA | 2 cut(s) | 104, 326 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 3 cut(s) | 263, 431, 443 |
| HpyAV | CCTTC | 2 cut(s) | 82, 235 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 456 |
| HpyCH4IV | ACGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 4 cut(s) | 18, 104, 178, 254 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 15, 110, 146 |
| HpyF3I | CTNAG | 2 cut(s) | 150, 229 |
| HpySE526I | ACGT | 1 cut(s) | 79 |
| Hsp92II | CATG | 4 cut(s) | 22, 59, 149, 365 |
| Kzo9I | GATC | 1 cut(s) | 259 |
| LmnI | GCTCC | 1 cut(s) | 433 |
| LpnPI | CCDG | 5 cut(s) | 90, 156, 173, 366, 444 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 1 cut(s) | 436 |
| MaeI | CTAG | 3 cut(s) | 311, 377, 443 |
| MaeII | ACGT | 1 cut(s) | 79 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 1 cut(s) | 261 |
| MboI | GATC | 1 cut(s) | 259 |
| MboII | GAAGA | 2 cut(s) | 36, 305 |
| MluCI | AATT | 3 cut(s) | 297, 305, 474 |
| MnlI | CCTC | 1 cut(s) | 53 |
| MseI | TTAA | 3 cut(s) | 165, 300, 481 |
| MslI | CAYNNNNRTG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 15, 110, 146 |
| NdeI | CATATG | 1 cut(s) | 408 |
| NdeII | GATC | 1 cut(s) | 259 |
| NlaIII | CATG | 4 cut(s) | 22, 59, 149, 365 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| PfeI | GAWTC | 2 cut(s) | 282, 395 |
| PkrI | GCNGC | 1 cut(s) | 180 |
| Ppu21I | YACGTR | 1 cut(s) | 80 |
| PspPI | GGNCC | 1 cut(s) | 351 |
| RsaI | GTAC | 1 cut(s) | 458 |
| RsaNI | GTAC | 1 cut(s) | 457 |
| RseI | CAYNNNNRTG | 1 cut(s) | 407 |
| SaqAI | TTAA | 3 cut(s) | 165, 300, 481 |
| SatI | GCNGC | 1 cut(s) | 179 |
| Sau3AI | GATC | 1 cut(s) | 259 |
| Sau96I | GGNCC | 1 cut(s) | 351 |
| SetI | ASST | 6 cut(s) | 82, 183, 246, 316, 334, 430 |
| SfaNI | GCATC | 1 cut(s) | 436 |
| SfcI | CTRYAG | 2 cut(s) | 327, 452 |
| SinI | GGWCC | 1 cut(s) | 351 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 407 |
| SmlI | CTYRAG | 1 cut(s) | 423 |
| SmoI | CTYRAG | 1 cut(s) | 423 |
| SnaBI | TACGTA | 1 cut(s) | 80 |
| Sse9I | AATT | 3 cut(s) | 297, 305, 474 |
| SsiI | CCGC | 1 cut(s) | 69 |
| SspMI | CTAG | 3 cut(s) | 311, 377, 443 |
| TaaI | ACNGT | 2 cut(s) | 238, 456 |
| TaiI | ACGT | 1 cut(s) | 82 |
| TasI | AATT | 3 cut(s) | 297, 305, 474 |
| TfiI | GAWTC | 2 cut(s) | 282, 395 |
| Tru1I | TTAA | 3 cut(s) | 165, 300, 481 |
| Tru9I | TTAA | 3 cut(s) | 165, 300, 481 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| TseI | GCWGC | 1 cut(s) | 178 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| TspDTI | ATGAA | 5 cut(s) | 35, 88, 326, 395, 467 |
| VpaK11BI | GGWCC | 1 cut(s) | 351 |
| XbaI | TCTAGA | 1 cut(s) | 442 |
| XspI | CTAG | 3 cut(s) | 311, 377, 443 |