Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 106 - 178 | 1.8e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 43, 299, 493 |
| AccBSI | CCGCTC | 1 cut(s) | 464 |
| AciI | CCGC | 2 cut(s) | 464, 525 |
| AclWI | GGATC | 1 cut(s) | 54 |
| AdeI | CACNNNGTG | 1 cut(s) | 299 |
| AfaI | GTAC | 3 cut(s) | 240, 277, 332 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 38, 43, 299, 493 |
| AgsI | TTSAA | 3 cut(s) | 62, 197, 217 |
| AjnI | CCWGG | 1 cut(s) | 207 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 26, 58 |
| AluBI | AGCT | 5 cut(s) | 18, 80, 289, 339, 398 |
| AluI | AGCT | 5 cut(s) | 18, 80, 289, 339, 398 |
| Alw21I | GWGCWC | 1 cut(s) | 82 |
| Alw26I | GTCTC | 2 cut(s) | 298, 506 |
| AlwI | GGATC | 1 cut(s) | 54 |
| AoxI | GGCC | 2 cut(s) | 205, 410 |
| ApeKI | GCWGC | 2 cut(s) | 286, 398 |
| AspS9I | GGNCC | 1 cut(s) | 411 |
| AsuHPI | GGTGA | 1 cut(s) | 476 |
| BanII | GRGCYC | 1 cut(s) | 82 |
| BbsI | GAAGAC | 2 cut(s) | 172, 461 |
| Bbv12I | GWGCWC | 1 cut(s) | 82 |
| BbvI | GCAGC | 2 cut(s) | 298, 385 |
| BccI | CCATC | 3 cut(s) | 149, 317, 491 |
| BceAI | ACGGC | 1 cut(s) | 425 |
| BciT130I | CCWGG | 1 cut(s) | 209 |
| BcoDI | GTCTC | 2 cut(s) | 298, 506 |
| BisI | GCNGC | 3 cut(s) | 287, 399, 525 |
| BlsI | GCNGC | 3 cut(s) | 288, 400, 526 |
| Bme1390I | CCNGG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 411 |
| BmrFI | CCNGG | 1 cut(s) | 209 |
| BpiI | GAAGAC | 2 cut(s) | 172, 461 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 37, 7, 39 |
| BpmI | CTGGAG | 1 cut(s) | 191 |
| BsaI | GGTCTC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 208, 487 |
| BsaWI | WCCGGW | 1 cut(s) | 244 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 38, 43, 299, 493 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| BseBI | CCWGG | 1 cut(s) | 209 |
| BseDI | CCNNGG | 3 cut(s) | 37, 208, 487 |
| BseGI | GGATG | 3 cut(s) | 241, 328, 502 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 38, 43, 299, 493 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseRI | GAGGAG | 1 cut(s) | 160 |
| BseXI | GCAGC | 2 cut(s) | 298, 385 |
| BshFI | GGCC | 2 cut(s) | 207, 412 |
| BsiHKAI | GWGCWC | 1 cut(s) | 82 |
| BsiSI | CCGG | 1 cut(s) | 245 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 38, 43, 299, 493 |
| BsmAI | GTCTC | 2 cut(s) | 298, 506 |
| BsnI | GGCC | 2 cut(s) | 207, 412 |
| Bso31I | GGTCTC | 1 cut(s) | 506 |
| Bsp1286I | GDGCHC | 1 cut(s) | 82 |
| Bsp143I | GATC | 1 cut(s) | 46 |
| Bsp19I | CCATGG | 1 cut(s) | 37 |
| BspACI | CCGC | 2 cut(s) | 464, 525 |
| BspANI | GGCC | 2 cut(s) | 207, 412 |
| BspPI | GGATC | 1 cut(s) | 54 |
| BspTNI | GGTCTC | 1 cut(s) | 506 |
| BsrBI | CCGCTC | 1 cut(s) | 464 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 3 cut(s) | 37, 208, 487 |
| BssMI | GATC | 1 cut(s) | 46 |
| BssT1I | CCWWGG | 2 cut(s) | 37, 487 |
| Bst2UI | CCWGG | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 2 cut(s) | 203, 238 |
| BstC8I | GCNNGC | 1 cut(s) | 29 |
| BstDEI | CTNAG | 1 cut(s) | 74 |
| BstDSI | CCRYGG | 1 cut(s) | 37 |
| BstF5I | GGATG | 3 cut(s) | 241, 328, 502 |
| BstKTI | GATC | 1 cut(s) | 49 |
| BstMAI | GTCTC | 2 cut(s) | 298, 506 |
| BstMBI | GATC | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 24, 404, 461 |
| BstNI | CCWGG | 1 cut(s) | 209 |
| BstNSI | RCATGY | 1 cut(s) | 168 |
| BstSCI | CCNGG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 2 cut(s) | 298, 385 |
| BstV2I | GAAGAC | 2 cut(s) | 172, 461 |
| BsuRI | GGCC | 2 cut(s) | 207, 412 |
| BtgI | CCRYGG | 1 cut(s) | 37 |
| BtsCI | GGATG | 3 cut(s) | 241, 328, 502 |
| BtsI | GCAGTG | 1 cut(s) | 534 |
| BtsIMutI | CAGTG | 2 cut(s) | 208, 534 |
| Cac8I | GCNNGC | 1 cut(s) | 29 |
| Cfr13I | GGNCC | 1 cut(s) | 411 |
| Csp6I | GTAC | 3 cut(s) | 239, 276, 331 |
| CviAII | CATG | 5 cut(s) | 38, 165, 251, 422, 493 |
| CviQI | GTAC | 3 cut(s) | 239, 276, 331 |
| DdeI | CTNAG | 1 cut(s) | 74 |
| DpnI | GATC | 1 cut(s) | 48 |
| DpnII | GATC | 1 cut(s) | 46 |
| DraIII | CACNNNGTG | 1 cut(s) | 299 |
| Ecl136II | GAGCTC | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 2 cut(s) | 37, 487 |
| Eco24I | GRGCYC | 1 cut(s) | 82 |
| Eco31I | GGTCTC | 1 cut(s) | 506 |
| Eco53kI | GAGCTC | 1 cut(s) | 80 |
| EcoICRI | GAGCTC | 1 cut(s) | 80 |
| EcoRII | CCWGG | 1 cut(s) | 207 |
| EcoT14I | CCWWGG | 2 cut(s) | 37, 487 |
| EcoT38I | GRGCYC | 1 cut(s) | 82 |
| ErhI | CCWWGG | 2 cut(s) | 37, 487 |
| FaeI | CATG | 5 cut(s) | 41, 168, 254, 425, 496 |
| FaiI | YATR | 9 cut(s) | 39, 113, 166, 252, 336, 423, 458, 494, 522 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 42, 74 |
| FatI | CATG | 5 cut(s) | 37, 164, 250, 421, 492 |
| FauI | CCCGC | 1 cut(s) | 457 |
| Fnu4HI | GCNGC | 3 cut(s) | 287, 399, 525 |
| FokI | GGATG | 3 cut(s) | 228, 335, 509 |
| FriOI | GRGCYC | 1 cut(s) | 82 |
| Fsp4HI | GCNGC | 3 cut(s) | 287, 399, 525 |
| GluI | GCNGC | 3 cut(s) | 287, 399, 525 |
| GsuI | CTGGAG | 1 cut(s) | 191 |
| HaeIII | GGCC | 2 cut(s) | 207, 412 |
| HapII | CCGG | 1 cut(s) | 245 |
| Hin1II | CATG | 5 cut(s) | 41, 168, 254, 425, 496 |
| HinfI | GANTC | 2 cut(s) | 53, 306 |
| HpaII | CCGG | 1 cut(s) | 245 |
| HphI | GGTGA | 1 cut(s) | 476 |
| Hpy166II | GTNNAC | 1 cut(s) | 505 |
| Hpy188I | TCNGA | 3 cut(s) | 93, 189, 374 |
| Hpy188III | TCNNGA | 4 cut(s) | 13, 50, 170, 439 |
| Hpy8I | GTNNAC | 1 cut(s) | 505 |
| HpyCH4III | ACNGT | 2 cut(s) | 203, 238 |
| HpyCH4V | TGCA | 4 cut(s) | 98, 131, 401, 407 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 24, 404, 461 |
| HpyF3I | CTNAG | 1 cut(s) | 74 |
| Hsp92II | CATG | 5 cut(s) | 41, 168, 254, 425, 496 |
| Kzo9I | GATC | 1 cut(s) | 46 |
| LmnI | GCTCC | 3 cut(s) | 85, 147, 326 |
| LpnPI | CCDG | 7 cut(s) | 41, 155, 194, 221, 258, 330, 452 |
| Lsp1109I | GCAGC | 2 cut(s) | 298, 385 |
| MaeIII | GTNAC | 1 cut(s) | 532 |
| MalI | GATC | 1 cut(s) | 48 |
| MbiI | CCGCTC | 1 cut(s) | 464 |
| MboI | GATC | 1 cut(s) | 46 |
| MboII | GAAGA | 4 cut(s) | 164, 172, 274, 461 |
| MfeI | CAATTG | 1 cut(s) | 402 |
| MhlI | GDGCHC | 1 cut(s) | 82 |
| MluCI | AATT | 4 cut(s) | 119, 219, 357, 402 |
| MlyI | GAGTC | 1 cut(s) | 300 |
| MmeI | TCCRAC | 3 cut(s) | 24, 107, 429 |
| MnlI | CCTC | 5 cut(s) | 77, 138, 166, 261, 445 |
| MseI | TTAA | 1 cut(s) | 122 |
| MspI | CCGG | 1 cut(s) | 245 |
| MspR9I | CCNGG | 1 cut(s) | 209 |
| MunI | CAATTG | 1 cut(s) | 402 |
| MvaI | CCWGG | 1 cut(s) | 209 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 24, 404, 461 |
| NcoI | CCATGG | 1 cut(s) | 37 |
| NdeII | GATC | 1 cut(s) | 46 |
| NlaIII | CATG | 5 cut(s) | 41, 168, 254, 425, 496 |
| NspI | RCATGY | 1 cut(s) | 168 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 326 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 43, 299, 493 |
| PkrI | GCNGC | 3 cut(s) | 288, 400, 526 |
| PleI | GAGTC | 1 cut(s) | 300 |
| PpsI | GAGTC | 1 cut(s) | 300 |
| Psp124BI | GAGCTC | 1 cut(s) | 82 |
| Psp6I | CCWGG | 1 cut(s) | 207 |
| PspGI | CCWGG | 1 cut(s) | 207 |
| PspPI | GGNCC | 1 cut(s) | 411 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 231, 263 |
| RsaI | GTAC | 3 cut(s) | 240, 277, 332 |
| RsaNI | GTAC | 3 cut(s) | 239, 276, 331 |
| SacI | GAGCTC | 1 cut(s) | 82 |
| SaqAI | TTAA | 1 cut(s) | 122 |
| SatI | GCNGC | 3 cut(s) | 287, 399, 525 |
| Sau3AI | GATC | 1 cut(s) | 46 |
| Sau96I | GGNCC | 1 cut(s) | 411 |
| SchI | GAGTC | 1 cut(s) | 300 |
| ScrFI | CCNGG | 1 cut(s) | 209 |
| SduI | GDGCHC | 1 cut(s) | 82 |
| SetI | ASST | 6 cut(s) | 20, 82, 194, 291, 341, 400 |
| Sse9I | AATT | 4 cut(s) | 119, 219, 357, 402 |
| SsiI | CCGC | 2 cut(s) | 464, 525 |
| SstI | GAGCTC | 1 cut(s) | 82 |
| StyD4I | CCNGG | 1 cut(s) | 207 |
| StyI | CCWWGG | 2 cut(s) | 37, 487 |
| TaaI | ACNGT | 2 cut(s) | 203, 238 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TaqII | GACCGA | 1 cut(s) | 530 |
| TasI | AATT | 4 cut(s) | 119, 219, 357, 402 |
| TatI | WGTACW | 1 cut(s) | 238 |
| TauI | GCSGC | 1 cut(s) | 527 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 1 cut(s) | 122 |
| Tru9I | TTAA | 1 cut(s) | 122 |
| TscAI | CASTG | 2 cut(s) | 208, 534 |
| TseI | GCWGC | 2 cut(s) | 286, 398 |
| TspDTI | ATGAA | 1 cut(s) | 239 |
| TspGWI | ACGGA | 1 cut(s) | 335 |
| TspRI | CASTG | 2 cut(s) | 208, 534 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 43, 299, 493 |
| XceI | RCATGY | 1 cut(s) | 168 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 35, 341, 494 |