Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 215 |
| Acc36I | ACCTGC | 2 cut(s) | 215, 603 |
| Acc65I | GGTACC | 1 cut(s) | 493 |
| AccB1I | GGYRCC | 1 cut(s) | 493 |
| AccI | GTMKAC | 1 cut(s) | 161 |
| AciI | CCGC | 1 cut(s) | 560 |
| AclWI | GGATC | 2 cut(s) | 479, 492 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcyI | GRCGYC | 1 cut(s) | 384 |
| AfaI | GTAC | 5 cut(s) | 31, 83, 329, 341, 495 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 55, 282, 536 |
| AgsI | TTSAA | 3 cut(s) | 259, 299, 412 |
| AjnI | CCWGG | 1 cut(s) | 194 |
| AluBI | AGCT | 1 cut(s) | 135 |
| AluI | AGCT | 1 cut(s) | 135 |
| AlwI | GGATC | 2 cut(s) | 479, 492 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 604 |
| Ama87I | CYCGRG | 1 cut(s) | 233 |
| AoxI | GGCC | 2 cut(s) | 273, 527 |
| AseI | ATTAAT | 1 cut(s) | 471 |
| Asp718I | GGTACC | 1 cut(s) | 493 |
| AspS9I | GGNCC | 1 cut(s) | 592 |
| AsuHPI | GGTGA | 1 cut(s) | 557 |
| AvaI | CYCGRG | 1 cut(s) | 233 |
| AvaII | GGWCC | 1 cut(s) | 592 |
| AxyI | CCTNAGG | 1 cut(s) | 534 |
| BalI | TGGCCA | 1 cut(s) | 275 |
| BamHI | GGATCC | 1 cut(s) | 484 |
| BanI | GGYRCC | 1 cut(s) | 493 |
| BccI | CCATC | 2 cut(s) | 371, 452 |
| BciT130I | CCWGG | 1 cut(s) | 196 |
| BfmI | CTRYAG | 1 cut(s) | 596 |
| BfuAI | ACCTGC | 2 cut(s) | 215, 603 |
| BmcAI | AGTACT | 1 cut(s) | 31 |
| Bme1390I | CCNGG | 1 cut(s) | 196 |
| Bme18I | GGWCC | 1 cut(s) | 592 |
| BmeT110I | CYCGRG | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 1 cut(s) | 592 |
| BmiI | GGNNCC | 3 cut(s) | 486, 495, 593 |
| BmrFI | CCNGG | 1 cut(s) | 196 |
| BpuEI | CTTGAG | 1 cut(s) | 35 |
| BsaHI | GRCGYC | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 2 cut(s) | 195, 488 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 55, 282, 536 |
| Bse21I | CCTNAGG | 1 cut(s) | 534 |
| Bse3DI | GCAATG | 2 cut(s) | 127, 315 |
| BseBI | CCWGG | 1 cut(s) | 196 |
| BseDI | CCNNGG | 2 cut(s) | 195, 488 |
| BseGI | GGATG | 1 cut(s) | 175 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 55, 282, 536 |
| BseMI | GCAATG | 2 cut(s) | 127, 315 |
| BseMII | CTCAG | 1 cut(s) | 525 |
| BseYI | CCCAGC | 1 cut(s) | 644 |
| BshFI | GGCC | 2 cut(s) | 275, 529 |
| BshNI | GGYRCC | 1 cut(s) | 493 |
| BsiHKCI | CYCGRG | 1 cut(s) | 233 |
| BsiSI | CCGG | 1 cut(s) | 36 |
| BsiWI | CGTACG | 1 cut(s) | 81 |
| BslFI | GGGAC | 2 cut(s) | 395, 605 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 55, 282, 536 |
| BsmFI | GGGAC | 2 cut(s) | 395, 605 |
| BsmI | GAATGC | 1 cut(s) | 226 |
| BsnI | GGCC | 2 cut(s) | 275, 529 |
| BsoBI | CYCGRG | 1 cut(s) | 233 |
| Bsp1407I | TGTACA | 1 cut(s) | 327 |
| Bsp143I | GATC | 1 cut(s) | 484 |
| BspACI | CCGC | 1 cut(s) | 560 |
| BspANI | GGCC | 2 cut(s) | 275, 529 |
| BspCNI | CTCAG | 1 cut(s) | 526 |
| BspLI | GGNNCC | 3 cut(s) | 486, 495, 593 |
| BspMAI | CTGCAG | 1 cut(s) | 600 |
| BspMI | ACCTGC | 2 cut(s) | 215, 603 |
| BspPI | GGATC | 2 cut(s) | 479, 492 |
| BspT107I | GGYRCC | 1 cut(s) | 493 |
| BsrDI | GCAATG | 2 cut(s) | 127, 315 |
| BsrGI | TGTACA | 1 cut(s) | 327 |
| BssECI | CCNNGG | 2 cut(s) | 195, 488 |
| BssMI | GATC | 1 cut(s) | 484 |
| BssNI | GRCGYC | 1 cut(s) | 384 |
| BssT1I | CCWWGG | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 1 cut(s) | 196 |
| Bst6I | CTCTTC | 1 cut(s) | 412 |
| BstACI | GRCGYC | 1 cut(s) | 384 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 604 |
| BstAUI | TGTACA | 1 cut(s) | 327 |
| BstC8I | GCNNGC | 2 cut(s) | 192, 366 |
| BstDEI | CTNAG | 2 cut(s) | 534, 656 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 53 |
| BstF5I | GGATG | 1 cut(s) | 175 |
| BstKTI | GATC | 1 cut(s) | 487 |
| BstMBI | GATC | 1 cut(s) | 484 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 272, 392, 604 |
| BstNI | CCWGG | 1 cut(s) | 196 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSCI | CCNGG | 1 cut(s) | 194 |
| BstSFI | CTRYAG | 1 cut(s) | 596 |
| BstX2I | RGATCY | 1 cut(s) | 484 |
| BstYI | RGATCY | 1 cut(s) | 484 |
| Bsu36I | CCTNAGG | 1 cut(s) | 534 |
| BsuRI | GGCC | 2 cut(s) | 275, 529 |
| BtsCI | GGATG | 1 cut(s) | 175 |
| BtsIMutI | CAGTG | 1 cut(s) | 351 |
| BveI | ACCTGC | 2 cut(s) | 215, 603 |
| Cac8I | GCNNGC | 2 cut(s) | 192, 366 |
| CaiI | CAGNNNCTG | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 1 cut(s) | 592 |
| CseI | GACGC | 2 cut(s) | 392, 596 |
| Csp6I | GTAC | 5 cut(s) | 30, 82, 328, 340, 494 |
| CviAII | CATG | 1 cut(s) | 365 |
| CviJI | RGCY | 7 cut(s) | 13, 59, 135, 190, 266, 275, 529 |
| CviKI_1 | RGCY | 7 cut(s) | 13, 59, 135, 190, 266, 275, 529 |
| CviQI | GTAC | 5 cut(s) | 30, 82, 328, 340, 494 |
| DdeI | CTNAG | 2 cut(s) | 534, 656 |
| DpnI | GATC | 1 cut(s) | 486 |
| DpnII | GATC | 1 cut(s) | 484 |
| DraI | TTTAAA | 1 cut(s) | 514 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 1 cut(s) | 412 |
| EarI | CTCTTC | 1 cut(s) | 412 |
| EciI | GGCGGA | 1 cut(s) | 575 |
| Eco130I | CCWWGG | 1 cut(s) | 488 |
| Eco47I | GGWCC | 1 cut(s) | 592 |
| Eco81I | CCTNAGG | 1 cut(s) | 534 |
| Eco88I | CYCGRG | 1 cut(s) | 233 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 53 |
| EcoO109I | RGGNCCY | 1 cut(s) | 592 |
| EcoRII | CCWGG | 1 cut(s) | 194 |
| EcoT14I | CCWWGG | 1 cut(s) | 488 |
| EcoT22I | ATGCAT | 2 cut(s) | 132, 366 |
| ErhI | CCWWGG | 1 cut(s) | 488 |
| FaeI | CATG | 1 cut(s) | 368 |
| FaiI | YATR | 8 cut(s) | 89, 132, 208, 248, 362, 366, 393, 542 |
| FaqI | GGGAC | 2 cut(s) | 395, 605 |
| FatI | CATG | 1 cut(s) | 364 |
| FblI | GTMKAC | 1 cut(s) | 161 |
| FokI | GGATG | 1 cut(s) | 182 |
| GsaI | CCCAGC | 1 cut(s) | 648 |
| HaeIII | GGCC | 2 cut(s) | 275, 529 |
| HapII | CCGG | 1 cut(s) | 36 |
| HgaI | GACGC | 2 cut(s) | 392, 596 |
| Hin1I | GRCGYC | 1 cut(s) | 384 |
| Hin1II | CATG | 1 cut(s) | 368 |
| HinfI | GANTC | 4 cut(s) | 181, 231, 308, 649 |
| HpaII | CCGG | 1 cut(s) | 36 |
| HphI | GGTGA | 1 cut(s) | 557 |
| Hpy166II | GTNNAC | 3 cut(s) | 162, 230, 618 |
| Hpy188I | TCNGA | 1 cut(s) | 242 |
| Hpy188III | TCNNGA | 1 cut(s) | 533 |
| Hpy8I | GTNNAC | 3 cut(s) | 162, 230, 618 |
| HpyCH4IV | ACGT | 2 cut(s) | 80, 84 |
| HpyCH4V | TGCA | 7 cut(s) | 120, 130, 224, 250, 320, 364, 598 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 272, 392, 604 |
| HpyF3I | CTNAG | 2 cut(s) | 534, 656 |
| HpySE526I | ACGT | 2 cut(s) | 80, 84 |
| Hsp92I | GRCGYC | 1 cut(s) | 384 |
| Hsp92II | CATG | 1 cut(s) | 368 |
| KpnI | GGTACC | 1 cut(s) | 497 |
| Kzo9I | GATC | 1 cut(s) | 484 |
| LpnPI | CCDG | 8 cut(s) | 49, 181, 208, 210, 266, 546, 608, 630 |
| MaeII | ACGT | 2 cut(s) | 80, 84 |
| MaeIII | GTNAC | 3 cut(s) | 305, 545, 600 |
| MalI | GATC | 1 cut(s) | 486 |
| MboI | GATC | 1 cut(s) | 484 |
| MboII | GAAGA | 1 cut(s) | 429 |
| MflI | RGATCY | 1 cut(s) | 484 |
| MlsI | TGGCCA | 1 cut(s) | 275 |
| MluCI | AATT | 5 cut(s) | 51, 203, 254, 291, 323 |
| MluNI | TGGCCA | 1 cut(s) | 275 |
| MlyI | GAGTC | 2 cut(s) | 225, 302 |
| MmeI | TCCRAC | 1 cut(s) | 101 |
| MnlI | CCTC | 7 cut(s) | 160, 379, 397, 415, 474, 529, 540 |
| Mox20I | TGGCCA | 1 cut(s) | 275 |
| Mph1103I | ATGCAT | 2 cut(s) | 132, 366 |
| MscI | TGGCCA | 1 cut(s) | 275 |
| MseI | TTAA | 5 cut(s) | 54, 137, 471, 507, 513 |
| MslI | CAYNNNNRTG | 1 cut(s) | 473 |
| Msp20I | TGGCCA | 1 cut(s) | 275 |
| MspI | CCGG | 1 cut(s) | 36 |
| MspR9I | CCNGG | 1 cut(s) | 196 |
| Mva1269I | GAATGC | 1 cut(s) | 226 |
| MvaI | CCWGG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 272, 392, 604 |
| NdeII | GATC | 1 cut(s) | 484 |
| NlaIII | CATG | 1 cut(s) | 368 |
| NlaIV | GGNNCC | 3 cut(s) | 486, 495, 593 |
| NmeAIII | GCCGAG | 1 cut(s) | 505 |
| NmuCI | GTSAC | 2 cut(s) | 305, 545 |
| NsiI | ATGCAT | 2 cut(s) | 132, 366 |
| NspI | RCATGY | 1 cut(s) | 368 |
| PaeI | GCATGC | 1 cut(s) | 368 |
| PaqCI | CACCTGC | 1 cut(s) | 215 |
| PctI | GAATGC | 1 cut(s) | 226 |
| PfeI | GAWTC | 2 cut(s) | 181, 649 |
| Pfl23II | CGTACG | 1 cut(s) | 81 |
| PleI | GAGTC | 2 cut(s) | 225, 302 |
| PpsI | GAGTC | 2 cut(s) | 225, 302 |
| PpuMI | RGGWCCY | 1 cut(s) | 592 |
| PshBI | ATTAAT | 1 cut(s) | 471 |
| Psp5II | RGGWCCY | 1 cut(s) | 592 |
| Psp6I | CCWGG | 1 cut(s) | 194 |
| PspFI | CCCAGC | 1 cut(s) | 644 |
| PspGI | CCWGG | 1 cut(s) | 194 |
| PspLI | CGTACG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 3 cut(s) | 486, 495, 593 |
| PspPI | GGNCC | 1 cut(s) | 592 |
| PspPPI | RGGWCCY | 1 cut(s) | 592 |
| PstI | CTGCAG | 1 cut(s) | 600 |
| PstNI | CAGNNNCTG | 1 cut(s) | 604 |
| PsuI | RGATCY | 1 cut(s) | 484 |
| RsaI | GTAC | 5 cut(s) | 31, 83, 329, 341, 495 |
| RsaNI | GTAC | 5 cut(s) | 30, 82, 328, 340, 494 |
| RseI | CAYNNNNRTG | 1 cut(s) | 473 |
| SaqAI | TTAA | 5 cut(s) | 54, 137, 471, 507, 513 |
| Sau3AI | GATC | 1 cut(s) | 484 |
| Sau96I | GGNCC | 1 cut(s) | 592 |
| ScaI | AGTACT | 1 cut(s) | 31 |
| SchI | GAGTC | 2 cut(s) | 225, 302 |
| ScrFI | CCNGG | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 596 |
| SinI | GGWCC | 1 cut(s) | 592 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 473 |
| SmlI | CTYRAG | 1 cut(s) | 14 |
| SmoI | CTYRAG | 1 cut(s) | 14 |
| SphI | GCATGC | 1 cut(s) | 368 |
| Sse9I | AATT | 5 cut(s) | 51, 203, 254, 291, 323 |
| SsiI | CCGC | 1 cut(s) | 560 |
| StyD4I | CCNGG | 1 cut(s) | 194 |
| StyI | CCWWGG | 1 cut(s) | 488 |
| TaiI | ACGT | 2 cut(s) | 83, 87 |
| TasI | AATT | 5 cut(s) | 51, 203, 254, 291, 323 |
| TatI | WGTACW | 2 cut(s) | 29, 327 |
| TfiI | GAWTC | 2 cut(s) | 181, 649 |
| Tru1I | TTAA | 5 cut(s) | 54, 137, 471, 507, 513 |
| Tru9I | TTAA | 5 cut(s) | 54, 137, 471, 507, 513 |
| TscAI | CASTG | 1 cut(s) | 358 |
| TseFI | GTSAC | 2 cut(s) | 305, 545 |
| Tsp45I | GTSAC | 2 cut(s) | 305, 545 |
| TspDTI | ATGAA | 4 cut(s) | 17, 138, 173, 591 |
| TspGWI | ACGGA | 2 cut(s) | 179, 635 |
| TspRI | CASTG | 1 cut(s) | 358 |
| VpaK11BI | GGWCC | 1 cut(s) | 592 |
| VspI | ATTAAT | 1 cut(s) | 471 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 53 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XmiI | GTMKAC | 1 cut(s) | 161 |
| ZrmI | AGTACT | 1 cut(s) | 31 |
| Zsp2I | ATGCAT | 2 cut(s) | 132, 366 |