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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 53, 410 |
| AccB1I | GGYRCC | 3 cut(s) | 245, 745, 1079 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 686 |
| AccI | GTMKAC | 2 cut(s) | 38, 636 |
| AccII | CGCG | 1 cut(s) | 407 |
| AciI | CCGC | 1 cut(s) | 6 |
| AclWI | GGATC | 5 cut(s) | 78, 169, 539, 1000, 1108 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 169, 878, 1704 |
| AdeI | CACNNNGTG | 1 cut(s) | 745 |
| AfaI | GTAC | 4 cut(s) | 182, 354, 1694, 1757 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 269, 686 |
| AhlI | ACTAGT | 1 cut(s) | 944 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 863, 895 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 60, 92, 1341, 1373 |
| AluBI | AGCT | 7 cut(s) | 196, 449, 568, 847, 923, 1133, 1409 |
| AluI | AGCT | 7 cut(s) | 196, 449, 568, 847, 923, 1133, 1409 |
| Alw21I | GWGCWC | 2 cut(s) | 965, 1173 |
| Alw26I | GTCTC | 1 cut(s) | 977 |
| AlwI | GGATC | 5 cut(s) | 78, 169, 539, 1000, 1108 |
| AoxI | GGCC | 3 cut(s) | 3, 147, 429 |
| ApeKI | GCWGC | 3 cut(s) | 791, 923, 1133 |
| ApoI | RAATTY | 3 cut(s) | 169, 878, 1704 |
| AspLEI | GCGC | 2 cut(s) | 113, 676 |
| AspS9I | GGNCC | 1 cut(s) | 660 |
| AsuHPI | GGTGA | 5 cut(s) | 191, 223, 823, 1549, 1720 |
| AvaII | GGWCC | 1 cut(s) | 660 |
| AxyI | CCTNAGG | 2 cut(s) | 549, 831 |
| BanI | GGYRCC | 3 cut(s) | 245, 745, 1079 |
| Bbv12I | GWGCWC | 2 cut(s) | 965, 1173 |
| BbvI | GCAGC | 3 cut(s) | 778, 910, 1120 |
| BccI | CCATC | 2 cut(s) | 93, 1575 |
| BceAI | ACGGC | 1 cut(s) | 172 |
| BciVI | GTATCC | 1 cut(s) | 1578 |
| BclI | TGATCA | 1 cut(s) | 1450 |
| BcoDI | GTCTC | 1 cut(s) | 977 |
| BcuI | ACTAGT | 1 cut(s) | 944 |
| BfaI | CTAG | 5 cut(s) | 362, 822, 945, 1221, 1421 |
| BfmI | CTRYAG | 1 cut(s) | 792 |
| BfuI | GTATCC | 1 cut(s) | 1578 |
| BisI | GCNGC | 4 cut(s) | 6, 792, 924, 1134 |
| BlsI | GCNGC | 4 cut(s) | 7, 793, 925, 1135 |
| Bme18I | GGWCC | 1 cut(s) | 660 |
| BmgT120I | GGNCC | 1 cut(s) | 660 |
| BmiI | GGNNCC | 5 cut(s) | 247, 747, 911, 1081, 1359 |
| BmrI | ACTGGG | 1 cut(s) | 247 |
| BmsI | GCATC | 5 cut(s) | 277, 606, 1143, 1298, 1402 |
| BmuI | ACTGGG | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 1 cut(s) | 957 |
| Bsa29I | ATCGAT | 1 cut(s) | 1151 |
| BsaBI | GATNNNNATC | 3 cut(s) | 291, 1010, 1157 |
| BsaJI | CCNNGG | 4 cut(s) | 202, 663, 950, 1323 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1341, 1371 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 269, 686 |
| Bse1I | ACTGG | 3 cut(s) | 242, 311, 587 |
| Bse21I | CCTNAGG | 2 cut(s) | 549, 831 |
| Bse3DI | GCAATG | 1 cut(s) | 318 |
| Bse8I | GATNNNNATC | 3 cut(s) | 291, 1010, 1157 |
| BseCI | ATCGAT | 1 cut(s) | 1151 |
| BseDI | CCNNGG | 4 cut(s) | 202, 663, 950, 1323 |
| BseGI | GGATG | 4 cut(s) | 104, 594, 862, 1586 |
| BseJI | GATNNNNATC | 3 cut(s) | 291, 1010, 1157 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 269, 686 |
| BseMI | GCAATG | 1 cut(s) | 318 |
| BseMII | CTCAG | 3 cut(s) | 978, 1290, 1537 |
| BseNI | ACTGG | 3 cut(s) | 242, 311, 587 |
| BseRI | GAGGAG | 1 cut(s) | 995 |
| BseXI | GCAGC | 3 cut(s) | 778, 910, 1120 |
| Bsh1236I | CGCG | 1 cut(s) | 407 |
| BshFI | GGCC | 3 cut(s) | 5, 149, 431 |
| BshNI | GGYRCC | 3 cut(s) | 245, 745, 1079 |
| BshVI | ATCGAT | 1 cut(s) | 1151 |
| BsiHKAI | GWGCWC | 2 cut(s) | 965, 1173 |
| BslFI | GGGAC | 3 cut(s) | 64, 508, 1495 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 269, 686 |
| BsmAI | GTCTC | 1 cut(s) | 977 |
| BsmBI | CGTCTC | 1 cut(s) | 977 |
| BsmFI | GGGAC | 3 cut(s) | 64, 508, 1495 |
| BsmI | GAATGC | 1 cut(s) | 1606 |
| BsnI | GGCC | 3 cut(s) | 5, 149, 431 |
| Bsp1286I | GDGCHC | 2 cut(s) | 965, 1173 |
| Bsp1407I | TGTACA | 2 cut(s) | 1692, 1755 |
| Bsp19I | CCATGG | 1 cut(s) | 950 |
| BspACI | CCGC | 1 cut(s) | 6 |
| BspANI | GGCC | 3 cut(s) | 5, 149, 431 |
| BspCNI | CTCAG | 3 cut(s) | 977, 1291, 1536 |
| BspDI | ATCGAT | 1 cut(s) | 1151 |
| BspFNI | CGCG | 1 cut(s) | 407 |
| BspHI | TCATGA | 1 cut(s) | 1197 |
| BspLI | GGNNCC | 5 cut(s) | 247, 747, 911, 1081, 1359 |
| BspMAI | CTGCAG | 1 cut(s) | 796 |
| BspPI | GGATC | 5 cut(s) | 78, 169, 539, 1000, 1108 |
| BspT107I | GGYRCC | 3 cut(s) | 245, 745, 1079 |
| BsrDI | GCAATG | 1 cut(s) | 318 |
| BsrGI | TGTACA | 2 cut(s) | 1692, 1755 |
| BsrI | ACTGG | 3 cut(s) | 242, 311, 587 |
| BssECI | CCNNGG | 4 cut(s) | 202, 663, 950, 1323 |
| BssNAI | GTATAC | 1 cut(s) | 39 |
| BssT1I | CCWWGG | 4 cut(s) | 202, 663, 950, 1323 |
| Bst1107I | GTATAC | 1 cut(s) | 39 |
| Bst4CI | ACNGT | 4 cut(s) | 55, 211, 444, 1546 |
| Bst6I | CTCTTC | 3 cut(s) | 822, 1090, 1466 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 281 |
| BstAUI | TGTACA | 2 cut(s) | 1692, 1755 |
| BstC8I | GCNNGC | 3 cut(s) | 109, 721, 1020 |
| BstDEI | CTNAG | 7 cut(s) | 80, 549, 831, 964, 1299, 1523, 1680 |
| BstDSI | CCRYGG | 1 cut(s) | 950 |
| BstF5I | GGATG | 4 cut(s) | 104, 594, 862, 1586 |
| BstFNI | CGCG | 1 cut(s) | 407 |
| BstHHI | GCGC | 2 cut(s) | 113, 676 |
| BstMAI | GTCTC | 1 cut(s) | 977 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 281, 1130, 1634 |
| BstSFI | CTRYAG | 1 cut(s) | 792 |
| BstUI | CGCG | 1 cut(s) | 407 |
| BstV1I | GCAGC | 3 cut(s) | 778, 910, 1120 |
| BstX2I | RGATCY | 2 cut(s) | 83, 1113 |
| BstYI | RGATCY | 2 cut(s) | 83, 1113 |
| BstZ17I | GTATAC | 1 cut(s) | 39 |
| Bsu15I | ATCGAT | 1 cut(s) | 1151 |
| Bsu36I | CCTNAGG | 2 cut(s) | 549, 831 |
| BsuI | GTATCC | 1 cut(s) | 1578 |
| BsuRI | GGCC | 3 cut(s) | 5, 149, 431 |
| BsuTUI | ATCGAT | 1 cut(s) | 1151 |
| BtgI | CCRYGG | 1 cut(s) | 950 |
| BtsCI | GGATG | 4 cut(s) | 104, 594, 862, 1586 |
| BtsI | GCAGTG | 1 cut(s) | 372 |
| BtsIMutI | CAGTG | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 3 cut(s) | 109, 721, 1020 |
| CciI | TCATGA | 1 cut(s) | 1197 |
| CfoI | GCGC | 2 cut(s) | 113, 676 |
| Cfr13I | GGNCC | 1 cut(s) | 660 |
| ClaI | ATCGAT | 1 cut(s) | 1151 |
| CseI | GACGC | 1 cut(s) | 413 |
| Csp6I | GTAC | 4 cut(s) | 181, 353, 1693, 1756 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 76, 111 |
| CviAII | CATG | 7 cut(s) | 842, 951, 1198, 1331, 1468, 1495, 1568 |
| CviQI | GTAC | 4 cut(s) | 181, 353, 1693, 1756 |
| DdeI | CTNAG | 7 cut(s) | 80, 549, 831, 964, 1299, 1523, 1680 |
| DraI | TTTAAA | 1 cut(s) | 1653 |
| DraIII | CACNNNGTG | 1 cut(s) | 745 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 53, 410 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 53, 410 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 3 cut(s) | 822, 1090, 1466 |
| EarI | CTCTTC | 3 cut(s) | 822, 1090, 1466 |
| Eco130I | CCWWGG | 4 cut(s) | 202, 663, 950, 1323 |
| Eco147I | AGGCCT | 1 cut(s) | 431 |
| Eco47I | GGWCC | 1 cut(s) | 660 |
| Eco81I | CCTNAGG | 2 cut(s) | 549, 831 |
| EcoT14I | CCWWGG | 4 cut(s) | 202, 663, 950, 1323 |
| EcoT22I | ATGCAT | 1 cut(s) | 1417 |
| ErhI | CCWWGG | 4 cut(s) | 202, 663, 950, 1323 |
| Esp3I | CGTCTC | 1 cut(s) | 977 |
| FaeI | CATG | 7 cut(s) | 845, 954, 1201, 1334, 1471, 1498, 1571 |
| FaqI | GGGAC | 3 cut(s) | 64, 508, 1495 |
| FatI | CATG | 7 cut(s) | 841, 950, 1197, 1330, 1467, 1494, 1567 |
| FbaI | TGATCA | 1 cut(s) | 1450 |
| FblI | GTMKAC | 2 cut(s) | 38, 636 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 792, 924, 1134 |
| FokI | GGATG | 4 cut(s) | 111, 601, 869, 1593 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 792, 924, 1134 |
| FspBI | CTAG | 5 cut(s) | 362, 822, 945, 1221, 1421 |
| GlaI | GCGC | 2 cut(s) | 112, 675 |
| GluI | GCNGC | 4 cut(s) | 6, 792, 924, 1134 |
| HaeIII | GGCC | 3 cut(s) | 5, 149, 431 |
| HgaI | GACGC | 1 cut(s) | 413 |
| HhaI | GCGC | 2 cut(s) | 113, 676 |
| Hin1II | CATG | 7 cut(s) | 845, 954, 1201, 1334, 1471, 1498, 1571 |
| Hin6I | GCGC | 2 cut(s) | 111, 674 |
| HinP1I | GCGC | 2 cut(s) | 111, 674 |
| HincII | GTYRAC | 2 cut(s) | 25, 1209 |
| HindII | GTYRAC | 2 cut(s) | 25, 1209 |
| HindIII | AAGCTT | 2 cut(s) | 194, 566 |
| HinfI | GANTC | 8 cut(s) | 757, 814, 890, 1216, 1227, 1261, 1474, 1712 |
| HpaI | GTTAAC | 1 cut(s) | 25 |
| HphI | GGTGA | 5 cut(s) | 191, 223, 823, 1549, 1720 |
| Hpy166II | GTNNAC | 6 cut(s) | 25, 39, 464, 637, 1209, 1693 |
| Hpy188I | TCNGA | 2 cut(s) | 1035, 1711 |
| Hpy188III | TCNNGA | 9 cut(s) | 342, 644, 706, 883, 1111, 1198, 1421, 1613, 1772 |
| Hpy8I | GTNNAC | 6 cut(s) | 25, 39, 464, 637, 1209, 1693 |
| Hpy99I | CGWCG | 1 cut(s) | 169 |
| HpyAV | CCTTC | 6 cut(s) | 421, 759, 802, 1247, 1544, 1735 |
| HpyCH4III | ACNGT | 4 cut(s) | 55, 211, 444, 1546 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 281, 1130, 1634 |
| HpyF3I | CTNAG | 7 cut(s) | 80, 549, 831, 964, 1299, 1523, 1680 |
| Hsp92II | CATG | 7 cut(s) | 845, 954, 1201, 1334, 1471, 1498, 1571 |
| HspAI | GCGC | 2 cut(s) | 111, 674 |
| Ksp22I | TGATCA | 1 cut(s) | 1450 |
| KspAI | GTTAAC | 1 cut(s) | 25 |
| LmnI | GCTCC | 1 cut(s) | 521 |
| Lsp1109I | GCAGC | 3 cut(s) | 778, 910, 1120 |
| LweI | GCATC | 5 cut(s) | 277, 606, 1143, 1298, 1402 |
| MaeI | CTAG | 5 cut(s) | 362, 822, 945, 1221, 1421 |
| MaeIII | GTNAC | 7 cut(s) | 229, 302, 369, 811, 824, 967, 1141 |
| MflI | RGATCY | 2 cut(s) | 83, 1113 |
| MhlI | GDGCHC | 2 cut(s) | 965, 1173 |
| MluCI | AATT | 9 cut(s) | 169, 530, 878, 1251, 1284, 1388, 1704, 1716, 1736 |
| MlyI | GAGTC | 3 cut(s) | 766, 808, 1483 |
| MmeI | TCCRAC | 2 cut(s) | 704, 1081 |
| Mph1103I | ATGCAT | 1 cut(s) | 1417 |
| MseI | TTAA | 4 cut(s) | 24, 1314, 1652, 1719 |
| MslI | CAYNNNNRTG | 1 cut(s) | 855 |
| MspA1I | CMGCKG | 1 cut(s) | 1409 |
| Mva1269I | GAATGC | 1 cut(s) | 1606 |
| MvnI | CGCG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 281, 1130, 1634 |
| NcoI | CCATGG | 1 cut(s) | 950 |
| NlaIII | CATG | 7 cut(s) | 845, 954, 1201, 1334, 1471, 1498, 1571 |
| NlaIV | GGNNCC | 5 cut(s) | 247, 747, 911, 1081, 1359 |
| NmuCI | GTSAC | 4 cut(s) | 229, 369, 811, 824 |
| NsiI | ATGCAT | 1 cut(s) | 1417 |
| PagI | TCATGA | 1 cut(s) | 1197 |
| PceI | AGGCCT | 1 cut(s) | 431 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 54, 411 |
| PctI | GAATGC | 1 cut(s) | 1606 |
| PfeI | GAWTC | 5 cut(s) | 890, 1216, 1227, 1261, 1712 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 686 |
| PkrI | GCNGC | 4 cut(s) | 7, 793, 925, 1135 |
| PleI | GAGTC | 3 cut(s) | 765, 808, 1482 |
| PpsI | GAGTC | 3 cut(s) | 765, 808, 1482 |
| PspN4I | GGNNCC | 5 cut(s) | 247, 747, 911, 1081, 1359 |
| PspPI | GGNCC | 1 cut(s) | 660 |
| PstI | CTGCAG | 1 cut(s) | 796 |
| PsuI | RGATCY | 2 cut(s) | 83, 1113 |
| PvuII | CAGCTG | 1 cut(s) | 1409 |
| RsaI | GTAC | 4 cut(s) | 182, 354, 1694, 1757 |
| RsaNI | GTAC | 4 cut(s) | 181, 353, 1693, 1756 |
| RseI | CAYNNNNRTG | 1 cut(s) | 855 |
| SaqAI | TTAA | 4 cut(s) | 24, 1314, 1652, 1719 |
| SatI | GCNGC | 4 cut(s) | 6, 792, 924, 1134 |
| Sau96I | GGNCC | 1 cut(s) | 660 |
| SchI | GAGTC | 3 cut(s) | 766, 808, 1483 |
| SduI | GDGCHC | 2 cut(s) | 965, 1173 |
| SfaNI | GCATC | 5 cut(s) | 277, 606, 1143, 1298, 1402 |
| SfcI | CTRYAG | 1 cut(s) | 792 |
| SinI | GGWCC | 1 cut(s) | 660 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 855 |
| SmlI | CTYRAG | 1 cut(s) | 972 |
| SmoI | CTYRAG | 1 cut(s) | 972 |
| SpeI | ACTAGT | 1 cut(s) | 944 |
| Sse9I | AATT | 9 cut(s) | 169, 530, 878, 1251, 1284, 1388, 1704, 1716, 1736 |
| SseBI | AGGCCT | 1 cut(s) | 431 |
| SsiI | CCGC | 1 cut(s) | 6 |
| SspI | AATATT | 1 cut(s) | 1318 |
| SspMI | CTAG | 5 cut(s) | 362, 822, 945, 1221, 1421 |
| StuI | AGGCCT | 1 cut(s) | 431 |
| StyI | CCWWGG | 4 cut(s) | 202, 663, 950, 1323 |
| TaaI | ACNGT | 4 cut(s) | 55, 211, 444, 1546 |
| TaqI | TCGA | 6 cut(s) | 57, 167, 414, 1151, 1309, 1541 |
| TasI | AATT | 9 cut(s) | 169, 530, 878, 1251, 1284, 1388, 1704, 1716, 1736 |
| TatI | WGTACW | 4 cut(s) | 180, 352, 1692, 1755 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 5 cut(s) | 890, 1216, 1227, 1261, 1712 |
| Tru1I | TTAA | 4 cut(s) | 24, 1314, 1652, 1719 |
| Tru9I | TTAA | 4 cut(s) | 24, 1314, 1652, 1719 |
| TscAI | CASTG | 1 cut(s) | 372 |
| TseFI | GTSAC | 4 cut(s) | 229, 369, 811, 824 |
| TseI | GCWGC | 3 cut(s) | 791, 923, 1133 |
| Tsp45I | GTSAC | 4 cut(s) | 229, 369, 811, 824 |
| TspDTI | ATGAA | 4 cut(s) | 1186, 1264, 1484, 1648 |
| TspRI | CASTG | 1 cut(s) | 372 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 686 |
| VpaK11BI | GGWCC | 1 cut(s) | 660 |
| XapI | RAATTY | 3 cut(s) | 169, 878, 1704 |
| XbaI | TCTAGA | 1 cut(s) | 1420 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1501 |
| XmiI | GTMKAC | 2 cut(s) | 38, 636 |
| XspI | CTAG | 5 cut(s) | 362, 822, 945, 1221, 1421 |
| Zsp2I | ATGCAT | 1 cut(s) | 1417 |