ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 786, 895 |
| AccB1I | GGYRCC | 2 cut(s) | 786, 895 |
| AccBSI | CCGCTC | 2 cut(s) | 783, 901 |
| AccI | GTMKAC | 2 cut(s) | 706, 1044 |
| AciI | CCGC | 5 cut(s) | 308, 783, 857, 899, 1057 |
| AclWI | GGATC | 3 cut(s) | 418, 536, 549 |
| AcuI | CTGAAG | 2 cut(s) | 56, 117 |
| AfaI | GTAC | 5 cut(s) | 770, 788, 841, 897, 955 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 509, 592, 593, 810 |
| AflIII | ACRYGT | 1 cut(s) | 950 |
| AgsI | TTSAA | 4 cut(s) | 119, 158, 531, 1015 |
| AjnI | CCWGG | 2 cut(s) | 174, 803 |
| AluBI | AGCT | 6 cut(s) | 127, 198, 279, 454, 959, 996 |
| AluI | AGCT | 6 cut(s) | 127, 198, 279, 454, 959, 996 |
| Alw26I | GTCTC | 3 cut(s) | 55, 715, 1074 |
| AlwI | GGATC | 3 cut(s) | 418, 536, 549 |
| Ama87I | CYCGRG | 1 cut(s) | 52 |
| AoxI | GGCC | 1 cut(s) | 15 |
| AseI | ATTAAT | 1 cut(s) | 66 |
| Asp718I | GGTACC | 2 cut(s) | 786, 895 |
| AspLEI | GCGC | 1 cut(s) | 927 |
| AspS9I | GGNCC | 4 cut(s) | 583, 619, 801, 854 |
| AsuHPI | GGTGA | 3 cut(s) | 313, 530, 647 |
| AsuII | TTCGAA | 1 cut(s) | 348 |
| AvaI | CYCGRG | 1 cut(s) | 52 |
| AvaII | GGWCC | 4 cut(s) | 583, 619, 801, 854 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 879, 912 |
| BamHI | GGATCC | 1 cut(s) | 541 |
| BanI | GGYRCC | 2 cut(s) | 786, 895 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 752, 770, 784, 802 |
| BbsI | GAAGAC | 2 cut(s) | 698, 893 |
| BccI | CCATC | 2 cut(s) | 382, 1075 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 816, 850 |
| BciT130I | CCWGG | 2 cut(s) | 176, 805 |
| BcoDI | GTCTC | 3 cut(s) | 55, 715, 1074 |
| BfaI | CTAG | 3 cut(s) | 816, 860, 891 |
| BfmI | CTRYAG | 1 cut(s) | 186 |
| BfoI | RGCGCY | 1 cut(s) | 928 |
| Bme1390I | CCNGG | 2 cut(s) | 176, 805 |
| Bme18I | GGWCC | 4 cut(s) | 583, 619, 801, 854 |
| BmeT110I | CYCGRG | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 4 cut(s) | 583, 619, 801, 854 |
| BmiI | GGNNCC | 5 cut(s) | 501, 543, 585, 788, 897 |
| BmrFI | CCNGG | 2 cut(s) | 176, 805 |
| BmrI | ACTGGG | 1 cut(s) | 1034 |
| BmsI | GCATC | 3 cut(s) | 409, 836, 1038 |
| BmuI | ACTGGG | 1 cut(s) | 1034 |
| BpiI | GAAGAC | 2 cut(s) | 698, 893 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 35, 67 |
| BpmI | CTGGAG | 2 cut(s) | 628, 826 |
| Bpu14I | TTCGAA | 1 cut(s) | 348 |
| Bsa29I | ATCGAT | 1 cut(s) | 627 |
| BsaAI | YACGTR | 1 cut(s) | 953 |
| BsaI | GGTCTC | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 2 cut(s) | 175, 545 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 200, 230, 629, 659 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 509, 592, 593, 810 |
| Bse1I | ACTGG | 2 cut(s) | 611, 1040 |
| BseBI | CCWGG | 2 cut(s) | 176, 805 |
| BseCI | ATCGAT | 1 cut(s) | 627 |
| BseDI | CCNNGG | 2 cut(s) | 175, 545 |
| BseGI | GGATG | 1 cut(s) | 424 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 509, 592, 593, 810 |
| BseMII | CTCAG | 2 cut(s) | 704, 788 |
| BseNI | ACTGG | 2 cut(s) | 611, 1040 |
| BseRI | GAGGAG | 3 cut(s) | 224, 650, 1024 |
| BshFI | GGCC | 1 cut(s) | 17 |
| BshNI | GGYRCC | 2 cut(s) | 786, 895 |
| BshVI | ATCGAT | 1 cut(s) | 627 |
| BsiHKCI | CYCGRG | 1 cut(s) | 52 |
| BslFI | GGGAC | 2 cut(s) | 558, 569 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 509, 592, 593, 810 |
| BsmAI | GTCTC | 3 cut(s) | 55, 715, 1074 |
| BsmBI | CGTCTC | 1 cut(s) | 1074 |
| BsmFI | GGGAC | 2 cut(s) | 558, 569 |
| BsmI | GAATGC | 1 cut(s) | 14 |
| BsnI | GGCC | 1 cut(s) | 17 |
| Bso31I | GGTCTC | 1 cut(s) | 55 |
| BsoBI | CYCGRG | 1 cut(s) | 52 |
| Bsp119I | TTCGAA | 1 cut(s) | 348 |
| Bsp143I | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| Bsp19I | CCATGG | 1 cut(s) | 545 |
| BspACI | CCGC | 5 cut(s) | 308, 783, 857, 899, 1057 |
| BspANI | GGCC | 1 cut(s) | 17 |
| BspCNI | CTCAG | 2 cut(s) | 705, 789 |
| BspDI | ATCGAT | 1 cut(s) | 627 |
| BspHI | TCATGA | 1 cut(s) | 1089 |
| BspLI | GGNNCC | 5 cut(s) | 501, 543, 585, 788, 897 |
| BspPI | GGATC | 3 cut(s) | 418, 536, 549 |
| BspQI | GCTCTTC | 1 cut(s) | 773 |
| BspT104I | TTCGAA | 1 cut(s) | 348 |
| BspT107I | GGYRCC | 2 cut(s) | 786, 895 |
| BspTNI | GGTCTC | 1 cut(s) | 55 |
| BsrBI | CCGCTC | 2 cut(s) | 783, 901 |
| BsrI | ACTGG | 2 cut(s) | 611, 1040 |
| BssECI | CCNNGG | 2 cut(s) | 175, 545 |
| BssMI | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| BssNAI | GTATAC | 1 cut(s) | 707 |
| BssT1I | CCWWGG | 1 cut(s) | 545 |
| Bst1107I | GTATAC | 1 cut(s) | 707 |
| Bst2UI | CCWGG | 2 cut(s) | 176, 805 |
| Bst4CI | ACNGT | 4 cut(s) | 396, 499, 679, 844 |
| Bst6I | CTCTTC | 4 cut(s) | 71, 660, 773, 967 |
| BstBAI | YACGTR | 1 cut(s) | 953 |
| BstBI | TTCGAA | 1 cut(s) | 348 |
| BstC8I | GCNNGC | 2 cut(s) | 129, 929 |
| BstDEI | CTNAG | 5 cut(s) | 204, 275, 465, 713, 797 |
| BstDSI | CCRYGG | 1 cut(s) | 545 |
| BstF5I | GGATG | 1 cut(s) | 424 |
| BstH2I | RGCGCY | 1 cut(s) | 928 |
| BstHHI | GCGC | 1 cut(s) | 927 |
| BstKTI | GATC | 4 cut(s) | 413, 544, 627, 1005 |
| BstMAI | GTCTC | 3 cut(s) | 55, 715, 1074 |
| BstMBI | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 965 |
| BstNI | CCWGG | 2 cut(s) | 176, 805 |
| BstSCI | CCNGG | 2 cut(s) | 174, 803 |
| BstSFI | CTRYAG | 1 cut(s) | 186 |
| BstV2I | GAAGAC | 2 cut(s) | 698, 893 |
| BstX2I | RGATCY | 1 cut(s) | 541 |
| BstYI | RGATCY | 1 cut(s) | 541 |
| BstZ17I | GTATAC | 1 cut(s) | 707 |
| Bsu15I | ATCGAT | 1 cut(s) | 627 |
| BsuRI | GGCC | 1 cut(s) | 17 |
| BsuTUI | ATCGAT | 1 cut(s) | 627 |
| BtgI | CCRYGG | 1 cut(s) | 545 |
| BtsCI | GGATG | 1 cut(s) | 424 |
| BtsIMutI | CAGTG | 2 cut(s) | 710, 794 |
| Cac8I | GCNNGC | 2 cut(s) | 129, 929 |
| CciI | TCATGA | 1 cut(s) | 1089 |
| CfoI | GCGC | 1 cut(s) | 927 |
| Cfr13I | GGNCC | 4 cut(s) | 583, 619, 801, 854 |
| ClaI | ATCGAT | 1 cut(s) | 627 |
| Csp6I | GTAC | 5 cut(s) | 769, 787, 840, 896, 954 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 699, 734 |
| CviAII | CATG | 7 cut(s) | 13, 164, 254, 546, 791, 1000, 1090 |
| CviJI | RGCY | 9 cut(s) | 17, 127, 198, 279, 284, 454, 815, 959, 996 |
| CviKI_1 | RGCY | 9 cut(s) | 17, 127, 198, 279, 284, 454, 815, 959, 996 |
| CviQI | GTAC | 5 cut(s) | 769, 787, 840, 896, 954 |
| DdeI | CTNAG | 5 cut(s) | 204, 275, 465, 713, 797 |
| DpnI | GATC | 4 cut(s) | 412, 543, 626, 1004 |
| DpnII | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| Eam1104I | CTCTTC | 4 cut(s) | 71, 660, 773, 967 |
| EarI | CTCTTC | 4 cut(s) | 71, 660, 773, 967 |
| Eco130I | CCWWGG | 1 cut(s) | 545 |
| Eco31I | GGTCTC | 1 cut(s) | 55 |
| Eco32I | GATATC | 1 cut(s) | 28 |
| Eco47I | GGWCC | 4 cut(s) | 583, 619, 801, 854 |
| Eco57I | CTGAAG | 2 cut(s) | 56, 117 |
| Eco88I | CYCGRG | 1 cut(s) | 52 |
| EcoO109I | RGGNCCY | 2 cut(s) | 619, 801 |
| EcoRII | CCWGG | 2 cut(s) | 174, 803 |
| EcoRV | GATATC | 1 cut(s) | 28 |
| EcoT14I | CCWWGG | 1 cut(s) | 545 |
| EcoT22I | ATGCAT | 1 cut(s) | 14 |
| ErhI | CCWWGG | 1 cut(s) | 545 |
| Esp3I | CGTCTC | 1 cut(s) | 1074 |
| FaeI | CATG | 7 cut(s) | 16, 167, 257, 549, 794, 1003, 1093 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 111, 143 |
| FaqI | GGGAC | 2 cut(s) | 558, 569 |
| FatI | CATG | 7 cut(s) | 12, 163, 253, 545, 790, 999, 1089 |
| FauI | CCCGC | 1 cut(s) | 776 |
| FauNDI | CATATG | 1 cut(s) | 562 |
| FblI | GTMKAC | 2 cut(s) | 706, 1044 |
| FokI | GGATG | 1 cut(s) | 431 |
| FspBI | CTAG | 3 cut(s) | 816, 860, 891 |
| GlaI | GCGC | 1 cut(s) | 926 |
| GsuI | CTGGAG | 2 cut(s) | 628, 826 |
| HaeII | RGCGCY | 1 cut(s) | 928 |
| HaeIII | GGCC | 1 cut(s) | 17 |
| HhaI | GCGC | 1 cut(s) | 927 |
| Hin1II | CATG | 7 cut(s) | 16, 167, 257, 549, 794, 1003, 1093 |
| Hin6I | GCGC | 1 cut(s) | 925 |
| HinP1I | GCGC | 1 cut(s) | 925 |
| HindIII | AAGCTT | 1 cut(s) | 452 |
| HphI | GGTGA | 3 cut(s) | 313, 530, 647 |
| Hpy166II | GTNNAC | 4 cut(s) | 675, 707, 854, 1045 |
| Hpy188I | TCNGA | 2 cut(s) | 75, 415 |
| Hpy188III | TCNNGA | 2 cut(s) | 119, 1090 |
| Hpy8I | GTNNAC | 4 cut(s) | 675, 707, 854, 1045 |
| HpyAV | CCTTC | 3 cut(s) | 298, 532, 754 |
| HpyCH4III | ACNGT | 4 cut(s) | 396, 499, 679, 844 |
| HpyCH4IV | ACGT | 1 cut(s) | 952 |
| HpyCH4V | TGCA | 6 cut(s) | 12, 701, 794, 827, 968, 1008 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 965 |
| HpyF3I | CTNAG | 5 cut(s) | 204, 275, 465, 713, 797 |
| HpySE526I | ACGT | 1 cut(s) | 952 |
| Hsp92II | CATG | 7 cut(s) | 16, 167, 257, 549, 794, 1003, 1093 |
| HspAI | GCGC | 1 cut(s) | 925 |
| KpnI | GGTACC | 2 cut(s) | 790, 899 |
| Kzo9I | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| LguI | GCTCTTC | 1 cut(s) | 773 |
| LmnI | GCTCC | 1 cut(s) | 1001 |
| LweI | GCATC | 3 cut(s) | 409, 836, 1038 |
| MaeI | CTAG | 3 cut(s) | 816, 860, 891 |
| MaeII | ACGT | 1 cut(s) | 952 |
| MaeIII | GTNAC | 3 cut(s) | 221, 368, 981 |
| MalI | GATC | 4 cut(s) | 412, 543, 626, 1004 |
| MbiI | CCGCTC | 2 cut(s) | 783, 901 |
| MboI | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| MboII | GAAGA | 8 cut(s) | 17, 62, 88, 677, 703, 790, 898, 984 |
| MfeI | CAATTG | 2 cut(s) | 383, 504 |
| MflI | RGATCY | 1 cut(s) | 541 |
| MluCI | AATT | 8 cut(s) | 37, 63, 350, 383, 504, 531, 846, 1114 |
| Mph1103I | ATGCAT | 1 cut(s) | 14 |
| MseI | TTAA | 5 cut(s) | 20, 66, 194, 992, 1117 |
| MspR9I | CCNGG | 2 cut(s) | 176, 805 |
| MunI | CAATTG | 2 cut(s) | 383, 504 |
| Mva1269I | GAATGC | 1 cut(s) | 14 |
| MvaI | CCWGG | 2 cut(s) | 176, 805 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 965 |
| NcoI | CCATGG | 1 cut(s) | 545 |
| NdeI | CATATG | 1 cut(s) | 562 |
| NdeII | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| NlaIII | CATG | 7 cut(s) | 16, 167, 257, 549, 794, 1003, 1093 |
| NlaIV | GGNNCC | 5 cut(s) | 501, 543, 585, 788, 897 |
| NsiI | ATGCAT | 1 cut(s) | 14 |
| NspV | TTCGAA | 1 cut(s) | 348 |
| PagI | TCATGA | 1 cut(s) | 1089 |
| PciSI | GCTCTTC | 1 cut(s) | 773 |
| PctI | GAATGC | 1 cut(s) | 14 |
| PfoI | TCCNGGA | 1 cut(s) | 803 |
| Ppu21I | YACGTR | 1 cut(s) | 953 |
| PpuMI | RGGWCCY | 2 cut(s) | 619, 801 |
| PshBI | ATTAAT | 1 cut(s) | 66 |
| Psp5II | RGGWCCY | 2 cut(s) | 619, 801 |
| Psp6I | CCWGG | 2 cut(s) | 174, 803 |
| PspGI | CCWGG | 2 cut(s) | 174, 803 |
| PspN4I | GGNNCC | 5 cut(s) | 501, 543, 585, 788, 897 |
| PspPI | GGNCC | 4 cut(s) | 583, 619, 801, 854 |
| PspPPI | RGGWCCY | 2 cut(s) | 619, 801 |
| PsuI | RGATCY | 1 cut(s) | 541 |
| RsaI | GTAC | 5 cut(s) | 770, 788, 841, 897, 955 |
| RsaNI | GTAC | 5 cut(s) | 769, 787, 840, 896, 954 |
| SapI | GCTCTTC | 1 cut(s) | 773 |
| SaqAI | TTAA | 5 cut(s) | 20, 66, 194, 992, 1117 |
| Sau3AI | GATC | 4 cut(s) | 410, 541, 624, 1002 |
| Sau96I | GGNCC | 4 cut(s) | 583, 619, 801, 854 |
| ScrFI | CCNGG | 2 cut(s) | 176, 805 |
| SfaNI | GCATC | 3 cut(s) | 409, 836, 1038 |
| SfcI | CTRYAG | 1 cut(s) | 186 |
| SfuI | TTCGAA | 1 cut(s) | 348 |
| SinI | GGWCC | 4 cut(s) | 583, 619, 801, 854 |
| Sse9I | AATT | 8 cut(s) | 37, 63, 350, 383, 504, 531, 846, 1114 |
| SsiI | CCGC | 5 cut(s) | 308, 783, 857, 899, 1057 |
| SspI | AATATT | 1 cut(s) | 823 |
| SspMI | CTAG | 3 cut(s) | 816, 860, 891 |
| StyD4I | CCNGG | 2 cut(s) | 174, 803 |
| StyI | CCWWGG | 1 cut(s) | 545 |
| TaaI | ACNGT | 4 cut(s) | 396, 499, 679, 844 |
| TaiI | ACGT | 1 cut(s) | 955 |
| TaqI | TCGA | 4 cut(s) | 348, 627, 836, 934 |
| TasI | AATT | 8 cut(s) | 37, 63, 350, 383, 504, 531, 846, 1114 |
| TatI | WGTACW | 1 cut(s) | 768 |
| Tru1I | TTAA | 5 cut(s) | 20, 66, 194, 992, 1117 |
| Tru9I | TTAA | 5 cut(s) | 20, 66, 194, 992, 1117 |
| TscAI | CASTG | 2 cut(s) | 717, 801 |
| TspDTI | ATGAA | 3 cut(s) | 656, 699, 1078 |
| TspGWI | ACGGA | 2 cut(s) | 112, 614 |
| TspRI | CASTG | 2 cut(s) | 717, 801 |
| VpaK11BI | GGWCC | 4 cut(s) | 583, 619, 801, 854 |
| VspI | ATTAAT | 1 cut(s) | 66 |
| XmiI | GTMKAC | 2 cut(s) | 706, 1044 |
| XspI | CTAG | 3 cut(s) | 816, 860, 891 |
| Zsp2I | ATGCAT | 1 cut(s) | 14 |