Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 21 - 105 | 5.4e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 26 |
| AciI | CCGC | 3 cut(s) | 30, 95, 229 |
| AcoI | YGGCCR | 1 cut(s) | 119 |
| AfaI | GTAC | 1 cut(s) | 108 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 207 |
| AflII | CTTAAG | 1 cut(s) | 205 |
| AgsI | TTSAA | 2 cut(s) | 146, 178 |
| AjiI | CACGTC | 1 cut(s) | 89 |
| AluBI | AGCT | 1 cut(s) | 159 |
| AluI | AGCT | 1 cut(s) | 159 |
| Alw26I | GTCTC | 1 cut(s) | 43 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 59 |
| AoxI | GGCC | 3 cut(s) | 119, 209, 316 |
| ApeKI | GCWGC | 4 cut(s) | 27, 83, 170, 293 |
| AspLEI | GCGC | 2 cut(s) | 35, 298 |
| AspS9I | GGNCC | 2 cut(s) | 38, 316 |
| AsuHPI | GGTGA | 2 cut(s) | 161, 175 |
| AsuNHI | GCTAGC | 1 cut(s) | 155 |
| AvaII | GGWCC | 1 cut(s) | 38 |
| BbvI | GCAGC | 4 cut(s) | 39, 70, 157, 305 |
| BccI | CCATC | 3 cut(s) | 160, 253, 307 |
| BceAI | ACGGC | 1 cut(s) | 306 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 231, 265 |
| BcoDI | GTCTC | 1 cut(s) | 43 |
| BfaI | CTAG | 1 cut(s) | 156 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfrI | CTTAAG | 1 cut(s) | 205 |
| BfuAI | ACCTGC | 1 cut(s) | 26 |
| BisI | GCNGC | 5 cut(s) | 28, 31, 84, 171, 294 |
| BlsI | GCNGC | 5 cut(s) | 29, 32, 85, 172, 295 |
| Bme18I | GGWCC | 1 cut(s) | 38 |
| BmgBI | CACGTC | 1 cut(s) | 89 |
| BmgT120I | GGNCC | 2 cut(s) | 38, 316 |
| BmiI | GGNNCC | 1 cut(s) | 40 |
| BmsI | GCATC | 2 cut(s) | 142, 307 |
| BmtI | GCTAGC | 1 cut(s) | 159 |
| BsaI | GGTCTC | 1 cut(s) | 43 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 207 |
| Bse3DI | GCAATG | 1 cut(s) | 42 |
| BseGI | GGATG | 3 cut(s) | 196, 298, 318 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 207 |
| BseMI | GCAATG | 1 cut(s) | 42 |
| BseXI | GCAGC | 4 cut(s) | 39, 70, 157, 305 |
| BsgI | GTGCAG | 1 cut(s) | 69 |
| BshFI | GGCC | 3 cut(s) | 121, 211, 318 |
| BsiSI | CCGG | 1 cut(s) | 122 |
| BslFI | GGGAC | 3 cut(s) | 24, 30, 195 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 207 |
| BsmAI | GTCTC | 1 cut(s) | 43 |
| BsmFI | GGGAC | 3 cut(s) | 24, 30, 195 |
| BsnI | GGCC | 3 cut(s) | 121, 211, 318 |
| Bso31I | GGTCTC | 1 cut(s) | 43 |
| BspACI | CCGC | 3 cut(s) | 30, 95, 229 |
| BspANI | GGCC | 3 cut(s) | 121, 211, 318 |
| BspLI | GGNNCC | 1 cut(s) | 40 |
| BspMI | ACCTGC | 1 cut(s) | 26 |
| BspOI | GCTAGC | 1 cut(s) | 159 |
| BspTI | CTTAAG | 1 cut(s) | 205 |
| BspTNI | GGTCTC | 1 cut(s) | 43 |
| BsrDI | GCAATG | 1 cut(s) | 42 |
| BstAFI | CTTAAG | 1 cut(s) | 205 |
| BstC8I | GCNNGC | 1 cut(s) | 157 |
| BstDEI | CTNAG | 2 cut(s) | 320, 330 |
| BstF5I | GGATG | 3 cut(s) | 196, 298, 318 |
| BstHHI | GCGC | 2 cut(s) | 35, 298 |
| BstMAI | GTCTC | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 92 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 4 cut(s) | 39, 70, 157, 305 |
| BsuRI | GGCC | 3 cut(s) | 121, 211, 318 |
| BtrI | CACGTC | 1 cut(s) | 89 |
| BtsCI | GGATG | 3 cut(s) | 196, 298, 318 |
| BveI | ACCTGC | 1 cut(s) | 26 |
| Cac8I | GCNNGC | 1 cut(s) | 157 |
| CaiI | CAGNNNCTG | 1 cut(s) | 59 |
| CfoI | GCGC | 2 cut(s) | 35, 298 |
| Cfr13I | GGNCC | 2 cut(s) | 38, 316 |
| Csp6I | GTAC | 1 cut(s) | 107 |
| CviAII | CATG | 2 cut(s) | 23, 269 |
| CviJI | RGCY | 7 cut(s) | 56, 83, 121, 159, 170, 211, 318 |
| CviKI_1 | RGCY | 7 cut(s) | 56, 83, 121, 159, 170, 211, 318 |
| CviQI | GTAC | 1 cut(s) | 107 |
| DdeI | CTNAG | 2 cut(s) | 320, 330 |
| EaeI | YGGCCR | 1 cut(s) | 119 |
| Eco147I | AGGCCT | 1 cut(s) | 211 |
| Eco31I | GGTCTC | 1 cut(s) | 43 |
| Eco47I | GGWCC | 1 cut(s) | 38 |
| EcoO109I | RGGNCCY | 1 cut(s) | 38 |
| FaeI | CATG | 2 cut(s) | 26, 272 |
| FaiI | YATR | 3 cut(s) | 24, 215, 270 |
| FaqI | GGGAC | 3 cut(s) | 24, 30, 195 |
| FatI | CATG | 2 cut(s) | 22, 268 |
| Fnu4HI | GCNGC | 5 cut(s) | 28, 31, 84, 171, 294 |
| FokI | GGATG | 3 cut(s) | 203, 285, 325 |
| Fsp4HI | GCNGC | 5 cut(s) | 28, 31, 84, 171, 294 |
| FspBI | CTAG | 1 cut(s) | 156 |
| GlaI | GCGC | 2 cut(s) | 34, 297 |
| GluI | GCNGC | 5 cut(s) | 28, 31, 84, 171, 294 |
| HaeIII | GGCC | 3 cut(s) | 121, 211, 318 |
| HapII | CCGG | 1 cut(s) | 122 |
| HhaI | GCGC | 2 cut(s) | 35, 298 |
| Hin1II | CATG | 2 cut(s) | 26, 272 |
| Hin6I | GCGC | 2 cut(s) | 33, 296 |
| HinP1I | GCGC | 2 cut(s) | 33, 296 |
| HincII | GTYRAC | 1 cut(s) | 220 |
| HindII | GTYRAC | 1 cut(s) | 220 |
| HinfI | GANTC | 1 cut(s) | 194 |
| HpaII | CCGG | 1 cut(s) | 122 |
| HphI | GGTGA | 2 cut(s) | 161, 175 |
| Hpy166II | GTNNAC | 1 cut(s) | 220 |
| Hpy188I | TCNGA | 1 cut(s) | 312 |
| Hpy8I | GTNNAC | 1 cut(s) | 220 |
| HpyAV | CCTTC | 3 cut(s) | 140, 172, 275 |
| HpyCH4IV | ACGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 3 cut(s) | 62, 86, 242 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 92 |
| HpyF3I | CTNAG | 2 cut(s) | 320, 330 |
| HpySE526I | ACGT | 1 cut(s) | 88 |
| Hsp92II | CATG | 2 cut(s) | 26, 272 |
| HspAI | GCGC | 2 cut(s) | 33, 296 |
| LpnPI | CCDG | 6 cut(s) | 21, 66, 77, 89, 135, 228 |
| Lsp1109I | GCAGC | 4 cut(s) | 39, 70, 157, 305 |
| LweI | GCATC | 2 cut(s) | 142, 307 |
| MaeI | CTAG | 1 cut(s) | 156 |
| MaeII | ACGT | 1 cut(s) | 88 |
| MboII | GAAGA | 1 cut(s) | 189 |
| MluCI | AATT | 2 cut(s) | 63, 135 |
| MnlI | CCTC | 2 cut(s) | 67, 118 |
| MseI | TTAA | 1 cut(s) | 206 |
| MspA1I | CMGCKG | 1 cut(s) | 30 |
| MspCI | CTTAAG | 1 cut(s) | 205 |
| MspI | CCGG | 1 cut(s) | 122 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 92 |
| NheI | GCTAGC | 1 cut(s) | 155 |
| NlaIII | CATG | 2 cut(s) | 26, 272 |
| NlaIV | GGNNCC | 1 cut(s) | 40 |
| PceI | AGGCCT | 1 cut(s) | 211 |
| PfeI | GAWTC | 1 cut(s) | 194 |
| PkrI | GCNGC | 5 cut(s) | 29, 32, 85, 172, 295 |
| PpuMI | RGGWCCY | 1 cut(s) | 38 |
| Psp5II | RGGWCCY | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 1 cut(s) | 40 |
| PspPI | GGNCC | 2 cut(s) | 38, 316 |
| PspPPI | RGGWCCY | 1 cut(s) | 38 |
| PstNI | CAGNNNCTG | 1 cut(s) | 59 |
| RsaI | GTAC | 1 cut(s) | 108 |
| RsaNI | GTAC | 1 cut(s) | 107 |
| SaqAI | TTAA | 1 cut(s) | 206 |
| SatI | GCNGC | 5 cut(s) | 28, 31, 84, 171, 294 |
| Sau96I | GGNCC | 2 cut(s) | 38, 316 |
| SetI | ASST | 5 cut(s) | 40, 91, 129, 151, 161 |
| SfaNI | GCATC | 2 cut(s) | 142, 307 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| SinI | GGWCC | 1 cut(s) | 38 |
| SmlI | CTYRAG | 1 cut(s) | 205 |
| SmoI | CTYRAG | 1 cut(s) | 205 |
| Sse9I | AATT | 2 cut(s) | 63, 135 |
| SseBI | AGGCCT | 1 cut(s) | 211 |
| SsiI | CCGC | 3 cut(s) | 30, 95, 229 |
| SspMI | CTAG | 1 cut(s) | 156 |
| StuI | AGGCCT | 1 cut(s) | 211 |
| TaiI | ACGT | 1 cut(s) | 91 |
| TaqI | TCGA | 2 cut(s) | 251, 257 |
| TasI | AATT | 2 cut(s) | 63, 135 |
| TauI | GCSGC | 1 cut(s) | 33 |
| TfiI | GAWTC | 1 cut(s) | 194 |
| Tru1I | TTAA | 1 cut(s) | 206 |
| Tru9I | TTAA | 1 cut(s) | 206 |
| TseI | GCWGC | 4 cut(s) | 27, 83, 170, 293 |
| TspDTI | ATGAA | 2 cut(s) | 11, 17 |
| TspGWI | ACGGA | 1 cut(s) | 86 |
| Vha464I | CTTAAG | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 1 cut(s) | 38 |
| XspI | CTAG | 1 cut(s) | 156 |