Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 123 | 1.9e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 351 |
| AccBSI | CCGCTC | 1 cut(s) | 294 |
| AccIII | TCCGGA | 1 cut(s) | 71 |
| AciI | CCGC | 3 cut(s) | 143, 155, 292 |
| AclWI | GGATC | 1 cut(s) | 29 |
| AcsI | RAATTY | 1 cut(s) | 100 |
| AcuI | CTGAAG | 3 cut(s) | 153, 197, 327 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 127 |
| AgsI | TTSAA | 2 cut(s) | 200, 243 |
| AluBI | AGCT | 3 cut(s) | 137, 227, 347 |
| AluI | AGCT | 3 cut(s) | 137, 227, 347 |
| AlwI | GGATC | 1 cut(s) | 29 |
| Aor13HI | TCCGGA | 1 cut(s) | 71 |
| AoxI | GGCC | 1 cut(s) | 285 |
| ApeKI | GCWGC | 2 cut(s) | 95, 347 |
| ApoI | RAATTY | 1 cut(s) | 100 |
| AspLEI | GCGC | 2 cut(s) | 17, 352 |
| AspS9I | GGNCC | 2 cut(s) | 235, 286 |
| AsuHPI | GGTGA | 2 cut(s) | 169, 320 |
| AvaII | GGWCC | 1 cut(s) | 235 |
| BanII | GRGCYC | 1 cut(s) | 54 |
| BbvI | GCAGC | 2 cut(s) | 82, 334 |
| BccI | CCATC | 1 cut(s) | 5 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BfoI | RGCGCY | 1 cut(s) | 18 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BisI | GCNGC | 2 cut(s) | 96, 348 |
| BlsI | GCNGC | 2 cut(s) | 97, 349 |
| Bme18I | GGWCC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 2 cut(s) | 235, 286 |
| BmiI | GGNNCC | 2 cut(s) | 236, 237 |
| Bsa29I | ATCGAT | 1 cut(s) | 9 |
| BsaWI | WCCGGW | 1 cut(s) | 71 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 127 |
| BseAI | TCCGGA | 1 cut(s) | 71 |
| BseCI | ATCGAT | 1 cut(s) | 9 |
| BseGI | GGATG | 2 cut(s) | 26, 70 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BseMII | CTCAG | 1 cut(s) | 244 |
| BseRI | GAGGAG | 2 cut(s) | 106, 286 |
| BseXI | GCAGC | 2 cut(s) | 82, 334 |
| BshFI | GGCC | 1 cut(s) | 287 |
| BshVI | ATCGAT | 1 cut(s) | 9 |
| BsiSI | CCGG | 1 cut(s) | 72 |
| BslFI | GGGAC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 127 |
| BsmFI | GGGAC | 1 cut(s) | 248 |
| BsnI | GGCC | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 54 |
| Bsp13I | TCCGGA | 1 cut(s) | 71 |
| Bsp143I | GATC | 1 cut(s) | 21 |
| BspACI | CCGC | 3 cut(s) | 143, 155, 292 |
| BspANI | GGCC | 1 cut(s) | 287 |
| BspCNI | CTCAG | 1 cut(s) | 243 |
| BspDI | ATCGAT | 1 cut(s) | 9 |
| BspEI | TCCGGA | 1 cut(s) | 71 |
| BspLI | GGNNCC | 2 cut(s) | 236, 237 |
| BspPI | GGATC | 1 cut(s) | 29 |
| BsrBI | CCGCTC | 1 cut(s) | 294 |
| BssMI | GATC | 1 cut(s) | 21 |
| Bst4CI | ACNGT | 1 cut(s) | 332 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 1 cut(s) | 360 |
| BstDEI | CTNAG | 1 cut(s) | 230 |
| BstF5I | GGATG | 2 cut(s) | 26, 70 |
| BstH2I | RGCGCY | 1 cut(s) | 18 |
| BstHHI | GCGC | 2 cut(s) | 17, 352 |
| BstKTI | GATC | 1 cut(s) | 24 |
| BstMBI | GATC | 1 cut(s) | 21 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 344 |
| BstV1I | GCAGC | 2 cut(s) | 82, 334 |
| BstX2I | RGATCY | 1 cut(s) | 21 |
| BstYI | RGATCY | 1 cut(s) | 21 |
| Bsu15I | ATCGAT | 1 cut(s) | 9 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 287 |
| BsuTUI | ATCGAT | 1 cut(s) | 9 |
| BtsCI | GGATG | 2 cut(s) | 26, 70 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| Cac8I | GCNNGC | 1 cut(s) | 360 |
| CfoI | GCGC | 2 cut(s) | 17, 352 |
| Cfr13I | GGNCC | 2 cut(s) | 235, 286 |
| ClaI | ATCGAT | 1 cut(s) | 9 |
| CviJI | RGCY | 8 cut(s) | 52, 95, 131, 137, 227, 287, 347, 358 |
| CviKI_1 | RGCY | 8 cut(s) | 52, 95, 131, 137, 227, 287, 347, 358 |
| DdeI | CTNAG | 1 cut(s) | 230 |
| DpnI | GATC | 1 cut(s) | 23 |
| DpnII | GATC | 1 cut(s) | 21 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Eco24I | GRGCYC | 1 cut(s) | 54 |
| Eco47I | GGWCC | 1 cut(s) | 235 |
| Eco57I | CTGAAG | 3 cut(s) | 153, 197, 327 |
| EcoO109I | RGGNCCY | 2 cut(s) | 235, 286 |
| EcoT38I | GRGCYC | 1 cut(s) | 54 |
| FaiI | YATR | 1 cut(s) | 354 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 300, 332 |
| FaqI | GGGAC | 1 cut(s) | 248 |
| Fnu4HI | GCNGC | 2 cut(s) | 96, 348 |
| FokI | GGATG | 2 cut(s) | 13, 77 |
| FriOI | GRGCYC | 1 cut(s) | 54 |
| Fsp4HI | GCNGC | 2 cut(s) | 96, 348 |
| FspI | TGCGCA | 1 cut(s) | 351 |
| GlaI | GCGC | 2 cut(s) | 16, 351 |
| GluI | GCNGC | 2 cut(s) | 96, 348 |
| HaeII | RGCGCY | 1 cut(s) | 18 |
| HaeIII | GGCC | 1 cut(s) | 287 |
| HapII | CCGG | 1 cut(s) | 72 |
| HhaI | GCGC | 2 cut(s) | 17, 352 |
| Hin6I | GCGC | 2 cut(s) | 15, 350 |
| HinP1I | GCGC | 2 cut(s) | 15, 350 |
| HinfI | GANTC | 2 cut(s) | 68, 206 |
| HpaII | CCGG | 1 cut(s) | 72 |
| HphI | GGTGA | 2 cut(s) | 169, 320 |
| Hpy188I | TCNGA | 1 cut(s) | 216 |
| Hpy188III | TCNNGA | 1 cut(s) | 72 |
| HpyAV | CCTTC | 1 cut(s) | 249 |
| HpyCH4III | ACNGT | 1 cut(s) | 332 |
| HpyCH4V | TGCA | 1 cut(s) | 98 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 344 |
| HpyF3I | CTNAG | 1 cut(s) | 230 |
| HspAI | GCGC | 2 cut(s) | 15, 350 |
| KflI | GGGWCCC | 1 cut(s) | 235 |
| Kpn2I | TCCGGA | 1 cut(s) | 71 |
| Kzo9I | GATC | 1 cut(s) | 21 |
| LmnI | GCTCC | 1 cut(s) | 299 |
| LpnPI | CCDG | 5 cut(s) | 46, 85, 91, 113, 217 |
| Lsp1109I | GCAGC | 2 cut(s) | 82, 334 |
| MaeIII | GTNAC | 1 cut(s) | 332 |
| MalI | GATC | 1 cut(s) | 23 |
| MbiI | CCGCTC | 1 cut(s) | 294 |
| MboI | GATC | 1 cut(s) | 21 |
| MboII | GAAGA | 1 cut(s) | 116 |
| MflI | RGATCY | 1 cut(s) | 21 |
| MhlI | GDGCHC | 1 cut(s) | 54 |
| MluCI | AATT | 3 cut(s) | 100, 168, 243 |
| MlyI | GAGTC | 1 cut(s) | 62 |
| MnlI | CCTC | 9 cut(s) | 68, 124, 127, 132, 265, 268, 277, 299, 307 |
| MroI | TCCGGA | 1 cut(s) | 71 |
| MseI | TTAA | 3 cut(s) | 90, 147, 246 |
| MspI | CCGG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 344 |
| NdeII | GATC | 1 cut(s) | 21 |
| NlaIV | GGNNCC | 2 cut(s) | 236, 237 |
| NmuCI | GTSAC | 1 cut(s) | 332 |
| NsbI | TGCGCA | 1 cut(s) | 351 |
| PfeI | GAWTC | 1 cut(s) | 206 |
| PkrI | GCNGC | 2 cut(s) | 97, 349 |
| PleI | GAGTC | 1 cut(s) | 62 |
| PpsI | GAGTC | 1 cut(s) | 62 |
| PpuMI | RGGWCCY | 1 cut(s) | 235 |
| Psp5II | RGGWCCY | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 2 cut(s) | 236, 237 |
| PspPI | GGNCC | 2 cut(s) | 235, 286 |
| PspPPI | RGGWCCY | 1 cut(s) | 235 |
| PsuI | RGATCY | 1 cut(s) | 21 |
| SaqAI | TTAA | 3 cut(s) | 90, 147, 246 |
| SatI | GCNGC | 2 cut(s) | 96, 348 |
| Sau3AI | GATC | 1 cut(s) | 21 |
| Sau96I | GGNCC | 2 cut(s) | 235, 286 |
| SchI | GAGTC | 1 cut(s) | 62 |
| SduI | GDGCHC | 1 cut(s) | 54 |
| SetI | ASST | 8 cut(s) | 38, 43, 79, 116, 139, 229, 252, 349 |
| SinI | GGWCC | 1 cut(s) | 235 |
| Sse9I | AATT | 3 cut(s) | 100, 168, 243 |
| SsiI | CCGC | 3 cut(s) | 143, 155, 292 |
| TaaI | ACNGT | 1 cut(s) | 332 |
| TaqI | TCGA | 2 cut(s) | 9, 282 |
| TasI | AATT | 3 cut(s) | 100, 168, 243 |
| TfiI | GAWTC | 1 cut(s) | 206 |
| Tru1I | TTAA | 3 cut(s) | 90, 147, 246 |
| Tru9I | TTAA | 3 cut(s) | 90, 147, 246 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TseFI | GTSAC | 1 cut(s) | 332 |
| TseI | GCWGC | 2 cut(s) | 95, 347 |
| Tsp45I | GTSAC | 1 cut(s) | 332 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 310 |
| VpaK11BI | GGWCC | 1 cut(s) | 235 |
| XapI | RAATTY | 1 cut(s) | 100 |