Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 299 |
| AciI | CCGC | 1 cut(s) | 337 |
| AclWI | GGATC | 2 cut(s) | 24, 408 |
| AcsI | RAATTY | 1 cut(s) | 306 |
| AfaI | GTAC | 3 cut(s) | 209, 357, 442 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 775 |
| AgsI | TTSAA | 5 cut(s) | 51, 346, 454, 656, 674 |
| AhlI | ACTAGT | 1 cut(s) | 680 |
| AluBI | AGCT | 1 cut(s) | 600 |
| AluI | AGCT | 1 cut(s) | 600 |
| Alw26I | GTCTC | 1 cut(s) | 738 |
| AlwI | GGATC | 2 cut(s) | 24, 408 |
| AoxI | GGCC | 1 cut(s) | 513 |
| ApeKI | GCWGC | 1 cut(s) | 215 |
| ApoI | RAATTY | 1 cut(s) | 306 |
| AspS9I | GGNCC | 2 cut(s) | 491, 514 |
| AsuC2I | CCSGG | 2 cut(s) | 236, 521 |
| AsuHPI | GGTGA | 4 cut(s) | 107, 331, 395, 736 |
| AvaII | GGWCC | 1 cut(s) | 491 |
| BanI | GGYRCC | 1 cut(s) | 299 |
| BbsI | GAAGAC | 1 cut(s) | 725 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BccI | CCATC | 3 cut(s) | 103, 550, 720 |
| BclI | TGATCA | 1 cut(s) | 574 |
| BcnI | CCSGG | 2 cut(s) | 236, 521 |
| BcoDI | GTCTC | 1 cut(s) | 738 |
| BcuI | ACTAGT | 1 cut(s) | 680 |
| BfaI | CTAG | 3 cut(s) | 20, 681, 773 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 521 |
| BisI | GCNGC | 1 cut(s) | 216 |
| BlsI | GCNGC | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 2 cut(s) | 236, 521 |
| Bme18I | GGWCC | 1 cut(s) | 491 |
| BmgT120I | GGNCC | 2 cut(s) | 491, 514 |
| BmiI | GGNNCC | 2 cut(s) | 301, 485 |
| BmrFI | CCNGG | 2 cut(s) | 236, 521 |
| BmsI | GCATC | 1 cut(s) | 248 |
| BpiI | GAAGAC | 1 cut(s) | 725 |
| BpmI | CTGGAG | 1 cut(s) | 282 |
| BpuMI | CCSGG | 2 cut(s) | 236, 521 |
| BsaI | GGTCTC | 1 cut(s) | 738 |
| BsaJI | CCNNGG | 2 cut(s) | 315, 487 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 775 |
| Bse1I | ACTGG | 1 cut(s) | 442 |
| Bse3DI | GCAATG | 3 cut(s) | 199, 225, 406 |
| BseDI | CCNNGG | 2 cut(s) | 315, 487 |
| BseGI | GGATG | 3 cut(s) | 114, 143, 712 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 775 |
| BseMI | GCAATG | 3 cut(s) | 199, 225, 406 |
| BseMII | CTCAG | 3 cut(s) | 139, 511, 763 |
| BseNI | ACTGG | 1 cut(s) | 442 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| BshFI | GGCC | 1 cut(s) | 515 |
| BshNI | GGYRCC | 1 cut(s) | 299 |
| BsiSI | CCGG | 2 cut(s) | 235, 521 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 775 |
| BsmAI | GTCTC | 1 cut(s) | 738 |
| BsmI | GAATGC | 1 cut(s) | 129 |
| BsnI | GGCC | 1 cut(s) | 515 |
| Bso31I | GGTCTC | 1 cut(s) | 738 |
| Bsp1407I | TGTACA | 1 cut(s) | 207 |
| Bsp143I | GATC | 4 cut(s) | 16, 145, 400, 574 |
| BspACI | CCGC | 1 cut(s) | 337 |
| BspANI | GGCC | 1 cut(s) | 515 |
| BspCNI | CTCAG | 3 cut(s) | 138, 510, 762 |
| BspLI | GGNNCC | 2 cut(s) | 301, 485 |
| BspPI | GGATC | 2 cut(s) | 24, 408 |
| BspT107I | GGYRCC | 1 cut(s) | 299 |
| BspTNI | GGTCTC | 1 cut(s) | 738 |
| BsrDI | GCAATG | 3 cut(s) | 199, 225, 406 |
| BsrGI | TGTACA | 1 cut(s) | 207 |
| BsrI | ACTGG | 1 cut(s) | 442 |
| BssECI | CCNNGG | 2 cut(s) | 315, 487 |
| BssMI | GATC | 4 cut(s) | 16, 145, 400, 574 |
| BssT1I | CCWWGG | 2 cut(s) | 315, 487 |
| Bst4CI | ACNGT | 3 cut(s) | 571, 690, 724 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 417 |
| BstAUI | TGTACA | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 1 cut(s) | 507 |
| BstDEI | CTNAG | 3 cut(s) | 125, 497, 749 |
| BstF5I | GGATG | 3 cut(s) | 114, 143, 712 |
| BstKTI | GATC | 4 cut(s) | 19, 148, 403, 577 |
| BstMAI | GTCTC | 1 cut(s) | 738 |
| BstMBI | GATC | 4 cut(s) | 16, 145, 400, 574 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 417, 521 |
| BstNSI | RCATGY | 3 cut(s) | 181, 415, 509 |
| BstSCI | CCNGG | 2 cut(s) | 234, 519 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| BstV2I | GAAGAC | 1 cut(s) | 725 |
| BstX2I | RGATCY | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 16 |
| BsuRI | GGCC | 1 cut(s) | 515 |
| BtsCI | GGATG | 3 cut(s) | 114, 143, 712 |
| BtsI | GCAGTG | 1 cut(s) | 273 |
| BtsIMutI | CAGTG | 1 cut(s) | 273 |
| Cac8I | GCNNGC | 1 cut(s) | 507 |
| Cfr13I | GGNCC | 2 cut(s) | 491, 514 |
| Csp6I | GTAC | 3 cut(s) | 208, 356, 441 |
| CviAII | CATG | 8 cut(s) | 178, 203, 412, 421, 459, 473, 506, 667 |
| CviJI | RGCY | 6 cut(s) | 62, 113, 260, 515, 524, 600 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 113, 260, 515, 524, 600 |
| CviQI | GTAC | 3 cut(s) | 208, 356, 441 |
| DdeI | CTNAG | 3 cut(s) | 125, 497, 749 |
| DpnI | GATC | 4 cut(s) | 18, 147, 402, 576 |
| DpnII | GATC | 4 cut(s) | 16, 145, 400, 574 |
| Eco130I | CCWWGG | 2 cut(s) | 315, 487 |
| Eco31I | GGTCTC | 1 cut(s) | 738 |
| Eco47I | GGWCC | 1 cut(s) | 491 |
| EcoRI | GAATTC | 1 cut(s) | 306 |
| EcoT14I | CCWWGG | 2 cut(s) | 315, 487 |
| ErhI | CCWWGG | 2 cut(s) | 315, 487 |
| FaeI | CATG | 8 cut(s) | 181, 206, 415, 424, 462, 476, 509, 670 |
| FatI | CATG | 8 cut(s) | 177, 202, 411, 420, 458, 472, 505, 666 |
| FbaI | TGATCA | 1 cut(s) | 574 |
| Fnu4HI | GCNGC | 1 cut(s) | 216 |
| FokI | GGATG | 3 cut(s) | 121, 150, 699 |
| Fsp4HI | GCNGC | 1 cut(s) | 216 |
| FspBI | CTAG | 3 cut(s) | 20, 681, 773 |
| GluI | GCNGC | 1 cut(s) | 216 |
| GsuI | CTGGAG | 1 cut(s) | 282 |
| HaeIII | GGCC | 1 cut(s) | 515 |
| HapII | CCGG | 2 cut(s) | 235, 521 |
| Hin1II | CATG | 8 cut(s) | 181, 206, 415, 424, 462, 476, 509, 670 |
| HinfI | GANTC | 4 cut(s) | 47, 223, 271, 670 |
| HpaII | CCGG | 2 cut(s) | 235, 521 |
| HphI | GGTGA | 4 cut(s) | 107, 331, 395, 736 |
| Hpy166II | GTNNAC | 2 cut(s) | 208, 686 |
| Hpy188I | TCNGA | 4 cut(s) | 253, 500, 717, 752 |
| Hpy188III | TCNNGA | 2 cut(s) | 637, 703 |
| Hpy8I | GTNNAC | 2 cut(s) | 208, 686 |
| HpyAV | CCTTC | 3 cut(s) | 505, 634, 724 |
| HpyCH4III | ACNGT | 3 cut(s) | 571, 690, 724 |
| HpyCH4IV | ACGT | 1 cut(s) | 382 |
| HpyCH4V | TGCA | 8 cut(s) | 192, 218, 286, 411, 420, 472, 505, 647 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 417, 521 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 497, 749 |
| HpySE526I | ACGT | 1 cut(s) | 382 |
| Hsp92II | CATG | 8 cut(s) | 181, 206, 415, 424, 462, 476, 509, 670 |
| Ksp22I | TGATCA | 1 cut(s) | 574 |
| Kzo9I | GATC | 4 cut(s) | 16, 145, 400, 574 |
| LmnI | GCTCC | 1 cut(s) | 263 |
| LpnPI | CCDG | 8 cut(s) | 170, 246, 248, 316, 423, 534, 622, 716 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| LweI | GCATC | 1 cut(s) | 248 |
| MaeI | CTAG | 3 cut(s) | 20, 681, 773 |
| MaeII | ACGT | 1 cut(s) | 382 |
| MaeIII | GTNAC | 3 cut(s) | 224, 272, 581 |
| MalI | GATC | 4 cut(s) | 18, 147, 402, 576 |
| MboI | GATC | 4 cut(s) | 16, 145, 400, 574 |
| MboII | GAAGA | 4 cut(s) | 240, 358, 707, 730 |
| MflI | RGATCY | 1 cut(s) | 16 |
| MluCI | AATT | 7 cut(s) | 31, 80, 306, 391, 428, 609, 628 |
| MlyI | GAGTC | 2 cut(s) | 232, 280 |
| MmeI | TCCRAC | 1 cut(s) | 528 |
| MseI | TTAA | 2 cut(s) | 390, 632 |
| MspI | CCGG | 2 cut(s) | 235, 521 |
| MspR9I | CCNGG | 2 cut(s) | 236, 521 |
| Mva1269I | GAATGC | 1 cut(s) | 129 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 417, 521 |
| NciI | CCSGG | 2 cut(s) | 236, 521 |
| NdeII | GATC | 4 cut(s) | 16, 145, 400, 574 |
| NlaIII | CATG | 8 cut(s) | 181, 206, 415, 424, 462, 476, 509, 670 |
| NlaIV | GGNNCC | 2 cut(s) | 301, 485 |
| NmuCI | GTSAC | 3 cut(s) | 224, 272, 581 |
| NspI | RCATGY | 3 cut(s) | 181, 415, 509 |
| PaeI | GCATGC | 1 cut(s) | 509 |
| PctI | GAATGC | 1 cut(s) | 129 |
| PfeI | GAWTC | 2 cut(s) | 47, 670 |
| PkrI | GCNGC | 1 cut(s) | 217 |
| PleI | GAGTC | 2 cut(s) | 231, 279 |
| PpsI | GAGTC | 2 cut(s) | 231, 279 |
| PspN4I | GGNNCC | 2 cut(s) | 301, 485 |
| PspPI | GGNCC | 2 cut(s) | 491, 514 |
| PsuI | RGATCY | 1 cut(s) | 16 |
| RsaI | GTAC | 3 cut(s) | 209, 357, 442 |
| RsaNI | GTAC | 3 cut(s) | 208, 356, 441 |
| SaqAI | TTAA | 2 cut(s) | 390, 632 |
| SatI | GCNGC | 1 cut(s) | 216 |
| Sau3AI | GATC | 4 cut(s) | 16, 145, 400, 574 |
| Sau96I | GGNCC | 2 cut(s) | 491, 514 |
| SchI | GAGTC | 2 cut(s) | 232, 280 |
| ScrFI | CCNGG | 2 cut(s) | 236, 521 |
| SetI | ASST | 8 cut(s) | 189, 321, 361, 372, 385, 602, 661, 750 |
| SfaNI | GCATC | 1 cut(s) | 248 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SinI | GGWCC | 1 cut(s) | 491 |
| SpeI | ACTAGT | 1 cut(s) | 680 |
| SphI | GCATGC | 1 cut(s) | 509 |
| Sse9I | AATT | 7 cut(s) | 31, 80, 306, 391, 428, 609, 628 |
| SsiI | CCGC | 1 cut(s) | 337 |
| SspI | AATATT | 1 cut(s) | 281 |
| SspMI | CTAG | 3 cut(s) | 20, 681, 773 |
| StyD4I | CCNGG | 2 cut(s) | 234, 519 |
| StyI | CCWWGG | 2 cut(s) | 315, 487 |
| TaaI | ACNGT | 3 cut(s) | 571, 690, 724 |
| TaiI | ACGT | 1 cut(s) | 385 |
| TasI | AATT | 7 cut(s) | 31, 80, 306, 391, 428, 609, 628 |
| TatI | WGTACW | 1 cut(s) | 207 |
| TfiI | GAWTC | 2 cut(s) | 47, 670 |
| Tru1I | TTAA | 2 cut(s) | 390, 632 |
| Tru9I | TTAA | 2 cut(s) | 390, 632 |
| TscAI | CASTG | 1 cut(s) | 273 |
| TseFI | GTSAC | 3 cut(s) | 224, 272, 581 |
| TseI | GCWGC | 1 cut(s) | 215 |
| Tsp45I | GTSAC | 3 cut(s) | 224, 272, 581 |
| TspDTI | ATGAA | 2 cut(s) | 89, 677 |
| TspRI | CASTG | 1 cut(s) | 273 |
| VpaK11BI | GGWCC | 1 cut(s) | 491 |
| XapI | RAATTY | 1 cut(s) | 306 |
| XceI | RCATGY | 3 cut(s) | 181, 415, 509 |
| XspI | CTAG | 3 cut(s) | 20, 681, 773 |